EsuBft1005_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1005_14a-0001
Unique NameEsuBft1005_14a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:147681..150443 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G180
ProteomeIdEsuBft1005_14
Protein domainsPF13374
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length117
Hectar predicted targeting categoryno signal peptide or anchor
Evalue1.08e-05
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondetermination of stomach left/right asymmetry
COG categoryC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_14aEsuBft1005_14aEctocarpus subulatus male Bft15bgeneScaffold_576 147681..150443 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_14a-0001EsuBft1005_14Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 149128..149673 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_14a-0001-exonagat-exon-70922Ectocarpus subulatus male Bft15bexonScaffold_576 147681..147852 +
EsuBft1005_14a-0001-exonEsuBft1005_14a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 149024..149130 +
EsuBft1005_14a-0001-exonagat-exon-70923Ectocarpus subulatus male Bft15bexonScaffold_576 149428..149550 +
EsuBft1005_14a-0001-exonagat-exon-70921Ectocarpus subulatus male Bft15bexonScaffold_576 149668..150443 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_14a-0001-exonagat-five_prime_utr-18Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 147681..147852 +
EsuBft1005_14a-0001-exonagat-five_prime_utr-19Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 149024..149127 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_14a-0001-cdsEsuBft1005_14a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 149128..149130 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_14a-0001-exonagat-three_prime_utr-37Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 149674..150443 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1005_14a-0001 ID=EsuBft1005_14a-0001|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1178bp|location=Sequence derived from alignment at Scaffold_576:147681..150443+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TATTGAACTTGAAGTTGACCCTGCCTCGTAAACCACTGTGTCTCAGGGCG
AGTACGCGGGGGCCGAGCCACTCTTTGAACGGTCCCAGTCCGTACGAGAG
AATGTACTAGATACGGAGCATGTTAATGTGGCCACGACGCTCAACGATCG
GGCGGTGTTGTGTCATTGCCAGAACAATTTTACGAGCGGTCAGAAGCCGT
TCGAGACAAGGCCCTGGATCCGGACCACCCCGATGTGGCCCGATTGCTCA
ACGACCGGGCGTTGTTGTTGGACAAGATGGAGCAGTATACGGACGCAGTT
CCACTATTGGAGAGGGCCCTCTCAATCCGTATGAAAAAGCTTGGGGAAAA
CCACCCAGACACGGTCAGCACTCAGAACAGCCTGGACGTTGTGCGAAGGA
AGGGGTGAAACGAGATGGAAGAAGCTGCCTGCCGTATATTGGTCACTGCC
AACGCCATGATCAAGGCAGGGCGAAGCTGCGGCAGGCAAGGTTCAACCGA
CCAATCGCCGGAGTGTGGTGGCCGACCTGGCCGACCTCTGCCGTATGCGT
AACGCGTGATGGCATCAGTTTGCTATGAAAAGCTGCAGAGGGAGGCTTAG
TAGCTCAACATACGGGCCTTTTCATTGTACCATACTATGGATCAGACCGC
GGTTGGAAGATCGCTACAATACACTTGTATAAGACTGACAGATTTGCAAG
GCATCATTAGGTCTGTGTGATCTATGCATCGGAACTGTCTGTCACGACTG
AATGTGTGTGGTACACGTATGCTCGTTGGGAAGACGATGGGATCGGAGAT
GATTTCCTGTGGACCAAGGATAGTAAAGCCATGGGGTTTAATACGCAACA
TGGTTCTGATGTCGATAGAAGTTGTGCGTAAGTGTAGTCCCGAATGTCCG
CGAACAGGAAACTGCGCGCGCCACTATTATTACAGTACGGGCCGGGAGAT
AAGAAACGTCAAAATCGGGTCGAGCCTCAATCCCTTATATTGGGTCGAAG
GACCACCCGACGTCGTCCATTTTCTTAGAAGGCATCTCTTATTCGTTTGG
ACTGCCGCATCCTCCTGATTTTCGTATTTCTTATTTTCTTTGTTCTGGCT
GAGAACACAACAACACACCAAACATTCATGCAGCATTAACCATAAAGCTC
GGTGTGGCAAACATTGGAGTGCGTCGCC
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protein sequence of EsuBft1005_14a-0001

>EsuBft1005_14 ID=EsuBft1005_14|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=43bp
MEQYTDAVPLLERALSIRMKKLGENHPDTVSTQNSLDVVRRKG
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mRNA from alignment at Scaffold_576:147681..150443+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1005_14a-0001 ID=EsuBft1005_14a-0001|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2763bp|location=Sequence derived from alignment at Scaffold_576:147681..150443+ (Ectocarpus subulatus male Bft15b)
TATTGAACTTGAAGTTGACCCTGCCTCGTAAACCACTGTGTCTCAGGGCG
AGTACGCGGGGGCCGAGCCACTCTTTGAACGGTCCCAGTCCGTACGAGAG
AATGTACTAGATACGGAGCATGTTAATGTGGCCACGACGCTCAACGATCG
GGCGGTGTTGTGTCATTGCCAGGTGAGGGTCAACGGACGACTCTAGATGC
TTGTCCGTAGTTTTTTATCTCACGTTTCCCTGAAACCCGACCCTCTGCCT
TGCTGCCCACTCCATACCATGGCGAGATGCTGAGACCGAAGTATTCTATT
AGCCATTGATGACCATACGCGATGGCCTAGGCGCTCAACAACCAAGCGGG
CGTAGTTACGAAAATGTGTTATGCGCAGGAGTAGACCCCAAGTTGATTGA
GCAATGAAGACAACTCTGCCACGCTGTATACGACTGCATGCCAGGGGAAG
TACGTTAAGGCCGAGTCACTCTATGAACGTTCACAAGCCATACGAGAGTG
GGTGCTAGGTCCGGAGCATCCCGATGTGGCCACAACGCTCAACAATCTTG
AACGTTTGTTGATGAGCCAGGTGACGATGCCTCTAGAACAAGACAATCCC
TCCGCAATTTTAGATCTCGTTCGGACTGAAATCCGACTCTCTGCCGCACT
GTCCACTCCATATCATGGCAAGTATAGTCTATGTTGAGACCGAGCCACTC
CATCAGCGGTCGTAAGCCATATGAGGGAAGGTGGTGGACCGAGAGTTGTA
GATCCCACATGTTCCGCACTGCTGGTTACGACTGCATGCCAGGGTATGGT
GAGGCTGATCCACTCTACGCAAGGTGTCAGACGATATATATATATGCCAG
GGTTCTGCGCCGTGAGCATGTGCATGTGGCCATGGCCCTCGACAACCGGG
CGAATTGTTGAGAATATGTTTCTCCGCAAATACATATCACGTTTCCGGGC
AAGTGTGTTCGGGCCACTAAAAATGCAGAAAGGTGAAGGGTCCGAAGCAC
CCAATCGTGGCCACAAGACTCAACGGACGGGCGGTGTGAGTGTTGATTCT
TTGGCAGTGACAGGTTTACTAGCCTCCAACATTCGTGCATGAAGCTGCTC
AAAGTATGCCGAGGTGGACCCTCTGTACCTTGCAGTCACTGTGGTTGGAG
GCAGTACGTTGGGCCTTGATCACCACGATCTTGGCACGTGCAAACAACCG
GGCGGGGTTGTTGAAGAATCAGGTGAGAACCCAAGCAATTATCTCAAAAT
TTAAATTGGTAAGGTCCACATTGTCGAGGGACATGTTGTTGTTTTTGGTG
CACTGCCTCACGCTAACCCACACAACCGATGCACATGAGGCAGAACAATT
TTACGAGCGGTCAGAAGCCGTTCGAGACAAGGCCCTGGATCCGGACCACC
CCGATGTGGCCCGATTGCTCAACGACCGGGCGTTGTTGTTGGACAAGATG
GTAAGGCACGGAAATCGTTCACCGTTAGCGGGTACTTGGGAGTAGTTTGC
TCTTATCCAGAAGCTTGTTGAGGACAACCAATTAGCGGCTGCCAGGTTTT
TGACGACGTCATTCCTAATGTGTCGATGTGATTTGTTTGCTACTTGACTG
GACCACTCGCTTCCAACCAACTACAGTTACTGCTTGTGTGTAGTACCTGG
TAAACGAATCGGTGTTTTCACCCCCAAGTCTTTGCACATAGGTGTGGTTT
GCCCACTGGATTAGGTTTTGCGCAACCCTGCTCGCAATCGTCTACAGGAG
CAGTATACGGACGCAGTTCCACTATTGGAGAGGGCCCTCTCAATCCGTAT
GAAAAAGCTTGGGGAAAACCACCCAGACACGGTCAGCACTCAGAACAGCC
TGGACGTTGTGCGAAGGAAGGTTCGTGCACACCTGGGTCGTCTGTTGGTG
GGCCAGCTTCATGCACGACGCGATGATACGCGCGAAGGCCTGGCTCTTAT
GCATATGTACCTGGAAATTGTTTGTTCCATGTCGCAGGGGTGAAACGAGA
TGGAAGAAGCTGCCTGCCGTATATTGGTCACTGCCAACGCCATGATCAAG
GCAGGGCGAAGCTGCGGCAGGCAAGGTTCAACCGACCAATCGCCGGAGTG
TGGTGGCCGACCTGGCCGACCTCTGCCGTATGCGTAACGCGTGATGGCAT
CAGTTTGCTATGAAAAGCTGCAGAGGGAGGCTTAGTAGCTCAACATACGG
GCCTTTTCATTGTACCATACTATGGATCAGACCGCGGTTGGAAGATCGCT
ACAATACACTTGTATAAGACTGACAGATTTGCAAGGCATCATTAGGTCTG
TGTGATCTATGCATCGGAACTGTCTGTCACGACTGAATGTGTGTGGTACA
CGTATGCTCGTTGGGAAGACGATGGGATCGGAGATGATTTCCTGTGGACC
AAGGATAGTAAAGCCATGGGGTTTAATACGCAACATGGTTCTGATGTCGA
TAGAAGTTGTGCGTAAGTGTAGTCCCGAATGTCCGCGAACAGGAAACTGC
GCGCGCCACTATTATTACAGTACGGGCCGGGAGATAAGAAACGTCAAAAT
CGGGTCGAGCCTCAATCCCTTATATTGGGTCGAAGGACCACCCGACGTCG
TCCATTTTCTTAGAAGGCATCTCTTATTCGTTTGGACTGCCGCATCCTCC
TGATTTTCGTATTTCTTATTTTCTTTGTTCTGGCTGAGAACACAACAACA
CACCAAACATTCATGCAGCATTAACCATAAAGCTCGGTGTGGCAAACATT
GGAGTGCGTCGCC
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Coding sequence (CDS) from alignment at Scaffold_576:147681..150443+

>EsuBft1005_14a-0001 ID=EsuBft1005_14a-0001|Name=EsuBft1005_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=132bp|location=Sequence derived from alignment at Scaffold_576:147681..150443+ (Ectocarpus subulatus male Bft15b)
ATGGAGCAGTATACGGACGCAGTTCCACTATTGGAGAGGGCCCTCTCAAT
CCGTATGAAAAAGCTTGGGGAAAACCACCCAGACACGGTCAGCACTCAGA
ACAGCCTGGACGTTGTGCGAAGGAAGGGGTGA
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