EsuBft1005_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1005_13a-0001
Unique NameEsuBft1005_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_576contigScaffold_576:152125..157032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1005_13
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length122
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-25_003520.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_13aEsuBft1005_13aEctocarpus subulatus male Bft15bgeneScaffold_576 152125..157032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_13a-0001EsuBft1005_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_576 152942..156995 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_13a-0001-exonagat-exon-70919Ectocarpus subulatus male Bft15bexonScaffold_576 152125..153142 -
EsuBft1005_13a-0001-exonEsuBft1005_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_576 153984..154087 -
EsuBft1005_13a-0001-exonagat-exon-70920Ectocarpus subulatus male Bft15bexonScaffold_576 156935..157032 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_13a-0001-exonagat-three_prime_utr-36Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_576 152125..152941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_13a-0001-cdsEsuBft1005_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_576 152942..153142 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1005_13a-0001-exonagat-five_prime_utr-17Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_576 156996..157032 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1005_13a-0001 ID=EsuBft1005_13a-0001|Name=EsuBft1005_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1220bp|location=Sequence derived from alignment at Scaffold_576:152125..157032- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCTGTGCATAGCTCCGTCCTTCTCCCATCCCTGAACATGTGTGTCAAAG
CTGGAGATACCGAGCACAGGAATTCAACGAGTTCGTCAACAATGAATGAA
CGTGCCGTCAAGCCTCCGTCTGATGTACCCTCCAAACGGCTGTTCCAAAA
CGATGCTTTGGACAGAACCTTGTGCGGTTCCAGCAGTACCGACAAAGAGA
AGATGGTGTCGTTAGGGGTTGGAATGGACGCACACGAGGGGGCTTTGGCT
CAGGGATTGGAGGGACACCAAGATGAGAAGAACGTGGGGGGGTGCGCGCT
TGCTTGCGTGGGCGTGGGTGGGGGTACACAACTCAAAATGATGGGCCCGC
GAGGGGGGGAGGGGGGTGTTTTGGGACGGGGGGAGCGGGGAGGACAGCAG
TAAGCGGGGTGTGCTGTGTTGTATGCATACGTTGTTTTTTTTTGTGGGGG
TACGGAAGAGCCCAAGGGTACGCACACGACGGGTGCGGGGCGTGTTGGAG
TAAACGGCTCGGCAAGTCGTCAGTTTGCATAGCCGTAGCAGTCCTTACAG
TACTTCCCCACAGGTCTCATGTTCTCCACGATTATTATCCCTTCCTTCAT
GTCGTAACGAATTCTCTCTCCTTTGCGTGTTCCGCGTGCCCTTTCGAGTG
GCGTGACTGGTAAATATGATTTTTCCGTCTGTGAGCTGCTTGTTGTTGTT
GCTGCTGCGGCTGTTGTTGTTGTTGTTGCTGTTGCTGCTGTCGTTGTTTA
TGCAGTAGTCTAGTTGTTGGCACCGGGCGTGCTTGGCACGGTAGATGCCG
TCGGTATTGCCTCGAAAGGGAAACCTCTCGTTGTGTTCACAAGTGTTTCT
CACCCGATCGGTACCCCTAACTGTTCGAAGAGGAACTAACCGTGCATTCA
AGCTTCGGGCGTTCCTGAGATACGATTTGCTACGCGTGCTGTACGTGTGC
GTGTTTTTTTATTGTTAGCATCGGCCGCGCTAAGCGGTTGACGAAAATAC
GCCAGTCGCTAGTGTTGTGTGTTTTTTTGCCGTGTCTTTTTCCTTGGAGC
ACCCTCGGCGTGCTTCGTCGAACTCGACCGAGCAATGAGGGGGGTTTTAC
GCTACACCGCCCGGCGAGGCTTTTCCATCACACCACAGAAGACATCAACA
GCAAGGTGGTGTGACCAATCAAGGATTGGAGCTATACTGTAATGCCTTCT
ACCGGCCAGAAATGCTGTGA
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protein sequence of EsuBft1005_13a-0001

>EsuBft1005_13 ID=EsuBft1005_13|Name=EsuBft1005_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=121bp
MCVKAGDTEHRNSTSSSTMNERAVKPPSDVPSKRLFQNDALDRTLCGSSS
TDKEKMVSLGVGMDAHEGALAQGLEGHQDEKNVGGCALACVGVGGGTQLK
MMGPRGGEGGVLGRGERGGQQ
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mRNA from alignment at Scaffold_576:152125..157032-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1005_13a-0001 ID=EsuBft1005_13a-0001|Name=EsuBft1005_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4908bp|location=Sequence derived from alignment at Scaffold_576:152125..157032- (Ectocarpus subulatus male Bft15b)
TGCTGTGCATAGCTCCGTCCTTCTCCCATCCCTGAACATGTGTGTCAAAG
CTGGAGATACCGAGCACAGGAATTCAACGAGTTCGTCAACAATGAATGGT
GAGAGGTATGCAAACTGCATGATTCAATTGGATGGATTTGTTTAATGTAT
AAACTATACAGATGGCGCTAGCATTTACTATGAACTCAGCAGTTAAGAAA
TGCAGCCTCGAAAAAATCGAAATTCAATAACTTGGCCATGAGAACACGCG
CTCACTTCCGACGTGGTATTAAGAACAAGAGCCGGTATTTATGGTGTAAC
AGAGCGCTTACGGATACGAACAGACCCCCCAAAAGTGGCAGCTGCAATAT
AAGAACTTTTTTTTTTGTTTTTTGTTTTTTACTCCCATCATTGGACTCTG
TCGTCTGCCCCTCTGGCCCCTATCCTCCACTTCTTCTAGCTAGACGACCC
AACCGGGGTCACATAGGAGGGGGCAGCTGGACCCCCTCCTGCGGTTCATG
CCTGAGGTATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCGCGA
CTTACAAAGTCGATTATGGTTTACTAACAAACGAGCTTTGCAGCGCGTCG
CTTTCATCCTAGACCAGGATTTATTTAGTGAGAAAAAAACTCTCCCTGCC
GGGGCTCGAACCCATGACCTGGCCCTTGGTGGTGAGGGGTGACTCCCGGA
CACCCCCCGCCGGCAGTTTCAAATCAGCGATGATGAGGGGGATCTCCGTT
TCAAGTAATACCGGTGCGGAGGGGGGGGCGGGGGGCCGGGGCGTTCTCTA
ATGTTGTGCATATTTTGTGGTTAGACCATTGGCCACGCGTCCTCGAGAGG
ACGGAGTATTGTTCTAAAGACTGATGGCCAAACGTTCCCTTCTACTTTAC
CAAAAAAATGTGTCTCAAAACCTTTTCCCTAGCCTATCTATCCTAACGAT
GTCACCTCCCGCCTCTTCAACCCAAGTTCCATGTCCCAGTACAGCTATAC
CGTCTTCTCTCCTAGCTGGTATTCCATGCCTCAAACACCTCCCTGTGTCT
TCCTTCTACTTTCCCAAGGCTCCGCCACGTAAAATCTCCTCTCCTTGTGC
AACAGACATCCCGCAACTACGTCAACCCGGTTGTTCGCACTCGGAGCCGC
GTTCACATTTTACCTTTGTCAGTGCGGAGGGGGGAGGGTGGGTAGGTGCT
AGCTTCGTTGTATAAGGCATACCCCTCATCGCGTGTCATTGGGGTGCCTG
CCATGCTGCGTGCCATGCACAAGAGCCATGTCTTTACCCCTTGAAATATT
GAAAGGGCTTGGTCAGCTGCCAAACAAAGATGAAAGGAGGTATAATTCTT
GATCGCACTTACAGGCCATCACAGATTATGTCATAGCTGGCAACTGCCCA
CGAGCAGTCAGACTGGGAGGCCATCGAGTCGACGCGGGGGCGACGAAAGC
TTTCCGACACCTCTTCTTCCTTCGGCGCACCCACCGGTTTTCGAATTCAA
GCGTGTAAACCCGCTGCTCTTGACAGTTCGTTGCTGCATGTGGAGTACTC
GTAAAACTGAGCATGGGCTGTCTTGGTGAGCTGATCACTCGGCCGTCTCA
GGAGCGTACTCGCCACCTTTTGCGACTACAGTGTGCATTTCGAGCTACAT
GTAGACCAAAGCGCCGCATGAATGCCATTGGACAAGGACAGTGGAGATGC
GGGTGCGGCGGTAGGGTCGTGGGCTTTGCTTGAGGGGAACGCGCCGTAGA
GCAGGGAGGAGGTCCGGCATTCGAAAAGCAGGGCGCAAATGTACCTGCTA
GAGCGGAGAGGACAATCACGCCGAACGTGACCCTTGTGGACCTGTAAATG
GTTCAATGTGTTTGCTCAGATGGGTCATTATGTCAGGCACTCTACCCTAT
CATGATCTTCGGTAAGTCGATTCCGGAGAGGTCTCTGTTGAGCGATTTTC
TATTATTATACTCTATTTTATGCATACTAACACGCTGCTCTCAAGTGTCA
GGCTGAATCCACCCACAAAAAATGAAAGTCCTCTGAATGGGGCCCTCGGC
GTAGAAATAAGAACAAGAACCCCGTGTATCATACGGATATGCCTGCTCGA
CATTAGAACTTTGAAATTTCGAACAGTTGCTCAACTTGAGACAGCCAATA
AGCATCGAGTCTTGGCCAATATAAGCGGTTCTCAAGTGCGGGCGCCATCT
GTTTATGTANCATTAGAACTTTGAAATTTCGAACAGTTGCTCAACTTGAG
ACAGCCAATAAGCATCGAGTCTTGGCCAATATAAGCGGTTCTCAAGTGCG
GGCGCCATCTGTTTATGTACACATCCCCATCCCTATTGCACAGCTGGATG
AGGAGACATCTTGCGCGCGTTTCAGGACATGATGATTGGGTCACTAGTCT
CTGCATTAGATGGCGGGAGCTGTCGTCCCCATGGCCATGCACACATGGTT
GTATACAGCCGGTTGGATGGAGACCTCAAGCTCGACCGTTTTGTACCGGA
CCCACCGGACTCGCACAGCATCGAAGCGCCGTCGTGTGATGAAAGGATGG
TGTTTGGTATCTTGTGCTGCCACGATACCGTTGCGTACATACTGGCGACG
AGCTCTGATGGTTTTGATCTGTGTTTGCTATGCATACAGAACGCACCACT
TGAGACATCCAACATCAGTATTTGGCCAAAGGGTAGAATACCAATTTCTC
ATGTATGTTGTAGCATACACGTATTTCTTGTCTGGCTCCGGGTGGGCGGC
AACGTATTGCGACCGGGTCGTACTACTGTCGTCCCCTGGATGATTGCTAC
ACGGTCGGACAGCATGCCATGCCATGCACTCACTGGTTCGTTCGTGTCGC
GACTAGACTATAGTCTGATGTGTTCCTTTCTGTTTGTCAGTATCGTGCCC
ACGCCCGAGTACTCTCCCCCCCCTCCTCCCTCCCCCTGGACCCAGAACGT
GCCGTCAAGCCTCCGTCTGATGTACCCTCCAAACGGCTGTTCCAAAACGA
TGCTTTGGACAGAACCTTGTGCGGTTCCAGCAGTACCGACAAAGAGAAGG
TGAGGCAGGCACATACACCGCTGTCTATTCCTCCTTACGTGTTGATCCGG
TTCTTTCGCTGGCGACGTGTGTTGTGCAACGGCGTCCCCTAGTGCTGTAC
TTGGGCGTGGTGAAAAGCAGAACACGCGTTGCCCAACAACGGGCGCGTTT
GGATGTATCTCAATCGTCTCGCTCGTGGCCTCGATTCCTTCTTCGCTCTC
TGACGCTACCCTTGTCTCCTCCTCATCCAGAATACTGTTGTACAGTGCTG
AAGTGCACGTGTTCGTTGCTATTTTTTCACGTAACGTAGCAGTCGTTCTC
CCCGGAGGTCCCACCTGCTGTACCCAAAAAAAGAAGTCAAGCCGTGTGTA
TCATAGCACGTCACGTCCAGTTTCCACTTCTCCGTCCTGCCAAGTGGAGC
GAACAATCGAGCATTCGGCATTCCTTCGGTATGATTTTTGATCGGCGCGA
GTGCGCGGGACGTGCGGTGGGGTGTACACATAGCCGTGCACGCCGTAGTC
GTTAGACCATTGACCTCGCATCCCCACTAAGCCGGGCCGGAGCACGCCGT
TGTTCACCGGCCCAGGCTAGCACATCACCAAGCACGAGGCCGTGAGGTGA
TGAGGGGCGTCGGTGTGTCGCTGTTTATTTCGAGGGCCACGCCCCAAAAC
ACAGCGCTCACCTTCGTCTCCAAAGCCAAGCGCAATACAACCCATGCTCT
TGTCTCCTCACAGGCAACCCCCCCCCATAAAACAAAATAAAGAAGGCCGC
ACGGACCAGTTGCTGTATGTTTCGTGTGCTACGGTGCTCGCCGGACGCTG
ACCCTGCTATCTCTGCCCGTGACCCTACGCACGTTTGCAGATGGTGTCGT
TAGGGGTTGGAATGGACGCACACGAGGGGGCTTTGGCTCAGGGATTGGAG
GGACACCAAGATGAGAAGAACGTGGGGGGGTGCGCGCTTGCTTGCGTGGG
CGTGGGTGGGGGTACACAACTCAAAATGATGGGCCCGCGAGGGGGGGAGG
GGGGTGTTTTGGGACGGGGGGAGCGGGGAGGACAGCAGTAAGCGGGGTGT
GCTGTGTTGTATGCATACGTTGTTTTTTTTTGTGGGGGTACGGAAGAGCC
CAAGGGTACGCACACGACGGGTGCGGGGCGTGTTGGAGTAAACGGCTCGG
CAAGTCGTCAGTTTGCATAGCCGTAGCAGTCCTTACAGTACTTCCCCACA
GGTCTCATGTTCTCCACGATTATTATCCCTTCCTTCATGTCGTAACGAAT
TCTCTCTCCTTTGCGTGTTCCGCGTGCCCTTTCGAGTGGCGTGACTGGTA
AATATGATTTTTCCGTCTGTGAGCTGCTTGTTGTTGTTGCTGCTGCGGCT
GTTGTTGTTGTTGTTGCTGTTGCTGCTGTCGTTGTTTATGCAGTAGTCTA
GTTGTTGGCACCGGGCGTGCTTGGCACGGTAGATGCCGTCGGTATTGCCT
CGAAAGGGAAACCTCTCGTTGTGTTCACAAGTGTTTCTCACCCGATCGGT
ACCCCTAACTGTTCGAAGAGGAACTAACCGTGCATTCAAGCTTCGGGCGT
TCCTGAGATACGATTTGCTACGCGTGCTGTACGTGTGCGTGTTTTTTTAT
TGTTAGCATCGGCCGCGCTAAGCGGTTGACGAAAATACGCCAGTCGCTAG
TGTTGTGTGTTTTTTTGCCGTGTCTTTTTCCTTGGAGCACCCTCGGCGTG
CTTCGTCGAACTCGACCGAGCAATGAGGGGGGTTTTACGCTACACCGCCC
GGCGAGGCTTTTCCATCACACCACAGAAGACATCAACAGCAAGGTGGTGT
GACCAATCAAGGATTGGAGCTATACTGTAATGCCTTCTACCGGCCAGAAA
TGCTGTGA
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Coding sequence (CDS) from alignment at Scaffold_576:152125..157032-

>EsuBft1005_13a-0001 ID=EsuBft1005_13a-0001|Name=EsuBft1005_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=366bp|location=Sequence derived from alignment at Scaffold_576:152125..157032- (Ectocarpus subulatus male Bft15b)
ATGTGTGTCAAAGCTGGAGATACCGAGCACAGGAATTCAACGAGTTCGTC
AACAATGAATGAACGTGCCGTCAAGCCTCCGTCTGATGTACCCTCCAAAC
GGCTGTTCCAAAACGATGCTTTGGACAGAACCTTGTGCGGTTCCAGCAGT
ACCGACAAAGAGAAGATGGTGTCGTTAGGGGTTGGAATGGACGCACACGA
GGGGGCTTTGGCTCAGGGATTGGAGGGACACCAAGATGAGAAGAACGTGG
GGGGGTGCGCGCTTGCTTGCGTGGGCGTGGGTGGGGGTACACAACTCAAA
ATGATGGGCCCGCGAGGGGGGGAGGGGGGTGTTTTGGGACGGGGGGAGCG
GGGAGGACAGCAGTAA
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