EsuBft1002_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1002_3a-0001
Unique NameEsuBft1002_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_228contigScaffold_228:54235..55389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1002_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length73
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_3aEsuBft1002_3aEctocarpus subulatus male Bft15bgeneScaffold_228 54235..55389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_3a-0001EsuBft1002_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_228 55133..55389 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_3a-0001-exonagat-exon-62778Ectocarpus subulatus male Bft15bexonScaffold_228 54235..54384 -
EsuBft1002_3a-0001-exonEsuBft1002_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_228 54640..55225 -
EsuBft1002_3a-0001-exonagat-exon-62777Ectocarpus subulatus male Bft15bexonScaffold_228 55387..55389 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_3a-0001-exonagat-three_prime_utr-13Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 54235..54384 -
EsuBft1002_3a-0001-exonagat-three_prime_utr-14Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_228 54640..55132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1002_3a-0001-cdsEsuBft1002_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_228 55133..55225 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1002_3a-0001 ID=EsuBft1002_3a-0001|Name=EsuBft1002_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=739bp|location=Sequence derived from alignment at Scaffold_228:54235..55389- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGTGGCAGTGTCGAGGGTCCGGGGGAACATGGGCTTGAATGGGGG
TTGCCTCAGAAAGAGCAAGACGGCGGGTGTTTCTCTCTTGGTTTGACCGG
TGGCAACATCGATCAGCAATGCCGCACAGACTTTTGCGCGCCGAAACATG
CGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGAGGATTTCTGTTC
GATACGGTGTCGGGAGTGCTGAGGGGGAAGGGCTTGACCCTTGTGCTTGC
AGATGGCGAGGAAGTAGGAACAGGGGGTGGCGGTGTCGGGGGTCCGGGGG
AACATGGGCTTGAGTGGGGGGTGCCTCAGAAAGAGCAAGACGGCGGGTGT
TTCTCTCTTGGTTTGACCGGTGGCAGTATCGATCAGCAATGCCGCACAGA
CTTTTGCGCGCCGAAATATGCGTGCGACAGCTTTAACCTAACCACTTCGG
TGGAAAGCGGATTTCTGTTCGATACGGTGTCAGGGGTACCAGGGAAGACG
GGGCCGACTTTTGTTTTATTTCGGGTGGATGAGGTTGGGGTTTTGTTCGT
TTTTCTCCATCTAAGGTTCGTGCCTAGAGTTCAGCTGTATGTTTCAACCA
AAGTTTTGTTGACTTAGAGGCAAACATTCCTAGCTATTGGGCATCGAGTT
AATTTGGCTTGGCATGACGGCCTTTACGATCGACTTTTTATGTATGTCTG
CATTTATCTGCAATTGTCGGAGGGCAAACAAAATAATAA
back to top

protein sequence of EsuBft1002_3a-0001

>EsuBft1002_3 ID=EsuBft1002_3|Name=EsuBft1002_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=31bp
MGVAVSRVRGNMGLNGGCLRKSKTAGVSLLV
back to top

mRNA from alignment at Scaffold_228:54235..55389-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1002_3a-0001 ID=EsuBft1002_3a-0001|Name=EsuBft1002_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1155bp|location=Sequence derived from alignment at Scaffold_228:54235..55389- (Ectocarpus subulatus male Bft15b)
ATGGTAGGGATTGAGCTTCTTATGTTGAAAATAAAACCCACACAACACAC
CGACGACGCGACATATTTTTTTGCCTCGTCGCCCTGTTACAATTCACTAC
CCTCGCGGTTTCCGTCTACATAGAGTACAAGTGGATGTTCGGATCTACAA
TACTATAGGAACAGGGGGTGGCAGTGTCGAGGGTCCGGGGGAACATGGGC
TTGAATGGGGGTTGCCTCAGAAAGAGCAAGACGGCGGGTGTTTCTCTCTT
GGTTTGACCGGTGGCAACATCGATCAGCAATGCCGCACAGACTTTTGCGC
GCCGAAACATGCGTGCGACAGCTTTAACCTAACCACTTCGGTGGAAAGAG
GATTTCTGTTCGATACGGTGTCGGGAGTGCTGAGGGGGAAGGGCTTGACC
CTTGTGCTTGCAGATGGCGAGGAAGTAGGAACAGGGGGTGGCGGTGTCGG
GGGTCCGGGGGAACATGGGCTTGAGTGGGGGGTGCCTCAGAAAGAGCAAG
ACGGCGGGTGTTTCTCTCTTGGTTTGACCGGTGGCAGTATCGATCAGCAA
TGCCGCACAGACTTTTGCGCGCCGAAATATGCGTGCGACAGCTTTAACCT
AACCACTTCGGTGGAAAGCGGATTTCTGTTCGATACGGTGTCAGGGGTAC
CAGGGAAGACGGGGCCGACTTTTGTTTTATTTCGGGTGGATGAGGTTGGG
GTTTTGTTCGTTTTTCTCCATCTAAGGTTCGTGCCTAGAGTTCAGCTGTA
GTGTTTCAAGCAAAGTTTTATTGACTTAGAGGTAATCATTCCTAGGTATT
GGGGATCGAGTTAAGTTGGCTAGCCATGACGGCCTTTACGATCGACTTTT
TATGTATGTCTGCATTTATCTGCANAATTCTGTTCGATACGGTGTCAGGG
GTACCAGGGAAGACGGGGCCGACTTTTGTTTTATTTCGGGTGGATGAGGT
TGGGGTTTTGTTCGTTTTTCTCCATCTAAGGTTCGTGCCTAGAGTTCAGC
TGTAGTGTTTCAACCAAAGTTTTGTTGACTTAGAGGCAAACATTCCTAGC
TATTGGGCATCGAGTTAATTTGGCTTGGCATGACGGCCTTTACGATCGAC
TTTTTATGTATGTCTGCATTTATCTGCAATTGTCGGAGGGCAAACAAAAT
AATAA
back to top

Coding sequence (CDS) from alignment at Scaffold_228:54235..55389-

>EsuBft1002_3a-0001 ID=EsuBft1002_3a-0001|Name=EsuBft1002_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=96bp|location=Sequence derived from alignment at Scaffold_228:54235..55389- (Ectocarpus subulatus male Bft15b)
ATGGGGGTGGCAGTGTCGAGGGTCCGGGGGAACATGGGCTTGAATGGGGG
TTGCCTCAGAAAGAGCAAGACGGCGGGTGTTTCTCTCTTGGTTTGA
back to top