EsuBft1000_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1000_2a-0001
Unique NameEsuBft1000_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_647contigScaffold_647:67844..69304 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1000_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length114
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1000_2aEsuBft1000_2aEctocarpus subulatus male Bft15bgeneScaffold_647 67844..69304 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1000_2a-0001-exonEsuBft1000_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_647 67844..68537 -
EsuBft1000_2a-0001-exonagat-exon-24128Ectocarpus subulatus male Bft15bexonScaffold_647 68618..69043 -
EsuBft1000_2a-0001-exonagat-exon-24127Ectocarpus subulatus male Bft15bexonScaffold_647 69282..69304 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1000_2a-0001-exonagat-three_prime_utr-1Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_647 67844..67867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1000_2a-0001-cdsEsuBft1000_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_647 67868..68537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1000_2a-0001EsuBft1000_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_647 67868..69304 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1000_2a-0001 ID=EsuBft1000_2a-0001|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1143bp|location=Sequence derived from alignment at Scaffold_647:67844..69304- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGTCGTGTCGGGGATTCCATGGAAGTGGGGGATCGAGGAGATTGC
AGTAGTGGACCAGTACACATCGCTCGGAGTAGAGATCGCAAAAGACTGCT
CGTGGAATGCACAAATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCA
GGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAA
AGTGACGGTTTTGAAGAGCGCAATCGTACCGCCGTTAGAGTATGCCGGAG
AAGTATGGGAAGGAAATAAGAAGGTAGTGAGAGAACTCGAGGCGGCGCAG
ATGAAAGCAGCGAAAATCATCCTAGGTTGTTCCAAGTACACAAGTAATGC
AGCCGTCAGGGCAGAATTGGGGATCCAATCCCCACGGTCGGGAAGAGACG
CGAGGAAGCTGACCTGGCAGTATCGCATGGGCGGGATGGGAGAGGAGGGA
GGACGTATGGAAGGGGTTCGACATGACGAAGATGAAACGCTGGAAACGGA
GGGTCTACAGGGGTTCAAGGAGAAGATATCTGGTGGTTGTGCCGAGAGAG
AAAAACAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTG
TACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACC
AATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAG
GCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGAC
GAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGT
CGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAACTTTACATGACTGAGC
TGGGAAAAATAGATGGGACGTACAGGGAGATGTTTGAGGCATGGAATAGA
GAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGC
GGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCC
ACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGT
GGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCAAACCGC
TATGGCATGCAAAACATAAGAGTACTTCCCCTCCATCGCTGCA
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protein sequence of EsuBft1000_2a-0001

>EsuBft1000_2 ID=EsuBft1000_2|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=372bp
MIVVSGIPWKWGIEEIAVVDQYTSLGVEIAKDCSWNAQMSKVAEKGKARA
GKLHPILANRHLDTRIKVTVLKSAIVPPLEYAGEVWEGNKKVVRELEAAQ
MKAAKIILGCSKYTSNAAVRAELGIQSPRSGRDARKLTWQYRMGGMGEEG
GRMEGVRHDEDETLETEGLQGFKEKISGGCAEREKQNLRKESKDKEGLEV
YGMLKEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDD
EFKCDCGFECEDRVHVVAECPLYKKERELYMTELGKIDGTYREMFEAWNR
EERTVAVLGHRRWVEKAGRDIVRIDRLGKTFLSHLWQSRKERLAIGDRSC
GNNAPSSRGRVVNGQTAMACKT
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mRNA from alignment at Scaffold_647:67844..69304-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1000_2a-0001 ID=EsuBft1000_2a-0001|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1461bp|location=Sequence derived from alignment at Scaffold_647:67844..69304- (Ectocarpus subulatus male Bft15b)
ATGATAGTCGTGTCGGGGATTCCGTAGATAGTATCTCGTACCGAGCAGGG
GGGCTGTTTGGGGTGCTCGGCAGAGTATACTGTCTACGGGGCCTCCGGGG
GGTACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
GTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACCA
GTACACATCGCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCAC
AAATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCAC
CCAATACTCGCAAACCGGCACCTCGATACACGCATCAAAGTGACGGTTTT
GAAGAGCGCAATCGTACCGCCGTTAGAGTATGCCGGAGAAGTATGGGAAG
GAAATAAGAAGGTAGTGAGAGAACTCGAGGCGGCGCAGATGAAAGCAGCG
AAAATCATCCTAGGTTGTTCCAAGTACACAAGTAATGCAGCCGTCAGGGC
AGAATTGGGGATCCAATCCCCACGGTCGGGAAGAGACGCGAGGAAGCTGA
CCTGGCAGTATCGCATGGGCGGGATGGGAGAGGAGGGGTTGCCATGAATT
GTATGGGAGGCGAAGTGGGCCAACAAAAAGAGGGGTAGACAACCCACGGA
ATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGTTCGACATGACGAAGA
TGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATATCTG
GTGGTTGTGCCGAGAGAGAAAAACAGAATCTAAGGAAAGAATCCAAGGAT
AAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAA
GGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAAAT
TCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGAAGACATAGGACG
GTAGACGAGGAAGACGACGAGTTCAAATGTGATTGCGGCTTCGAATGCGA
AGACCGTGTTCATGTAGTCGCGGAATGTCCGTTGTACAAGAAGGAGAGGG
AACTTTACATGACTGAGCTGGGAAAAATAGATGGGACGTACAGGGAGATG
TTTGAGGCATGGAATAGAGAGGAAAGGACGGTAGCTGTACTGGGGCATAG
GAGGTGGGTTGAAAAGGCGGGAAGGGATATCGTTAGGATAGACAGACTAG
GGAAGACATTTTTGAGCCACCTTTGGCAAAGTAGAAAGGAACGATTGGCC
ATCGGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGT
GGTCAATGGTCAAACCGCTATGGCATGCAAAACATAAGAGTACTTCCCCT
CCATCGCTGCA
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Coding sequence (CDS) from alignment at Scaffold_647:67844..69304-

>EsuBft1000_2a-0001 ID=EsuBft1000_2a-0001|Name=EsuBft1000_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1119bp|location=Sequence derived from alignment at Scaffold_647:67844..69304- (Ectocarpus subulatus male Bft15b)
ATGATAGTCGTGTCGGGGATTCCATGGAAGTGGGGGATCGAGGAGATTGC
AGTAGTGGACCAGTACACATCGCTCGGAGTAGAGATCGCAAAAGACTGCT
CGTGGAATGCACAAATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCA
GGGAAGCTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAA
AGTGACGGTTTTGAAGAGCGCAATCGTACCGCCGTTAGAGTATGCCGGAG
AAGTATGGGAAGGAAATAAGAAGGTAGTGAGAGAACTCGAGGCGGCGCAG
ATGAAAGCAGCGAAAATCATCCTAGGTTGTTCCAAGTACACAAGTAATGC
AGCCGTCAGGGCAGAATTGGGGATCCAATCCCCACGGTCGGGAAGAGACG
CGAGGAAGCTGACCTGGCAGTATCGCATGGGCGGGATGGGAGAGGAGGGA
GGACGTATGGAAGGGGTTCGACATGACGAAGATGAAACGCTGGAAACGGA
GGGTCTACAGGGGTTCAAGGAGAAGATATCTGGTGGTTGTGCCGAGAGAG
AAAAACAGAATCTAAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTG
TACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACC
AATGGATGCAGGAACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAG
GCCTTCGAGAACGTCGACGAAGACATAGGACGGTAGACGAGGAAGACGAC
GAGTTCAAATGTGATTGCGGCTTCGAATGCGAAGACCGTGTTCATGTAGT
CGCGGAATGTCCGTTGTACAAGAAGGAGAGGGAACTTTACATGACTGAGC
TGGGAAAAATAGATGGGACGTACAGGGAGATGTTTGAGGCATGGAATAGA
GAGGAAAGGACGGTAGCTGTACTGGGGCATAGGAGGTGGGTTGAAAAGGC
GGGAAGGGATATCGTTAGGATAGACAGACTAGGGAAGACATTTTTGAGCC
ACCTTTGGCAAAGTAGAAAGGAACGATTGGCCATCGGTGATCGGTCCTGT
GGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATGGTCAAACCGC
TATGGCATGCAAAACATAA
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