mRNA_Ecto-sp9_F_contig10471.449.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10471.449.1
Unique NamemRNA_Ecto-sp9_F_contig10471.449.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein ycf68 (Fragment) n=10 Tax=cellular organisms TaxID=131567 RepID=A0A2L2Y7X0_PARTP)

HSP 1 Score: 170 bits (430), Expect = 1.560e-52
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   25 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCANQQ 303
            EEGGDDVKSSWPLRAGLHTCYNGGDSGQRD  VELISK+HLSSD  LQL+ MKLESLVIADQHAAVNTFPGLVHTARHTMGVG TRRRCAN++
Sbjct:   13 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRDREVELISKSHLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGFTRRRCANRK 105
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BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L2S0_LUPAL)

HSP 1 Score: 171 bits (433), Expect = 2.640e-52
Identity = 87/105 (82.86%), Postives = 94/105 (89.52%), Query Frame = 1 
Query:   25 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCANQQWRQSTTVGQRLG 339
            EEGGDDVKSSWPLRAGLHTCYNGGDSGQR G+ ELISK+HLSSD  LQL+ MKLESLVIADQ+AAVNTFPGLVHTARHTMGVG TRRRCAN++  Q+TTVG   G
Sbjct:   66 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRRGDPELISKSHLSSDCTLQLECMKLESLVIADQNAAVNTFPGLVHTARHTMGVGFTRRRCANRKG-QATTVGSATG 169
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BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein ycf68 n=2 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KX99_LUPAL)

HSP 1 Score: 171 bits (434), Expect = 7.420e-52
Identity = 88/111 (79.28%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:    4 GTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCANQQWRQSTTVGQRL 336
            GTAGDKPEEGGDDVKSSWPL  GLHTCYNGGDSG R   +E I K+ LSSD  LQL+ MKLESLVIADQHAAVNTFPGLVHTARHTMGVG TRR CAN+Q RQ TT   RL
Sbjct:   64 GTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGFTRRWCANRQRRQPTTGNLRL 174
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BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5KRD3_LUPAL)

HSP 1 Score: 162 bits (410), Expect = 2.030e-49
Identity = 81/98 (82.65%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:    4 GTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCAN 297
            GTAGDKPEEGGDDVKSSWPL  GLHTCYNGGDSG R   +E I K+ LSSD  LQL+ MKLESLVIADQHAAVNTFPGLVHTARHTMGVG TRR CAN
Sbjct:   29 GTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGFTRRWCAN 126
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BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein n=1 Tax=Novosphingobium sp. PY1 TaxID=1882221 RepID=UPI001AA298A5)

HSP 1 Score: 159 bits (402), Expect = 1.450e-48
Identity = 79/93 (84.95%), Postives = 82/93 (88.17%), Query Frame = 1 
Query:    7 TAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRR 285
            TAGDKPEEGGDDVKSSWPL AGLHTCYNGGDSGQR    +LISK+ LSSD  LQL+ MK ESLVIADQHAAVNTFPGLVHTARHTMGVG TRR
Sbjct:    8 TAGDKPEEGGDDVKSSWPLHAGLHTCYNGGDSGQRVREHKLISKSRLSSDCSLQLESMKAESLVIADQHAAVNTFPGLVHTARHTMGVGFTRR 100
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein ycf68 (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L5T7_LUPAL)

HSP 1 Score: 162 bits (410), Expect = 5.290e-48
Identity = 81/98 (82.65%), Postives = 84/98 (85.71%), Query Frame = 1 
Query:    4 GTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCAN 297
            GTAGDKPEEGGDDVKSSWPL  GLHTCYNGGDSG R   +E I K+ LSSD  LQL+ MKLESLVIADQHAAVNTFPGLVHTARHTMGVG TRR CAN
Sbjct:   87 GTAGDKPEEGGDDVKSSWPLWVGLHTCYNGGDSGTRSREMEQIPKSRLSSDCTLQLECMKLESLVIADQHAAVNTFPGLVHTARHTMGVGFTRRWCAN 184
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BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382FH34_9ZZZZ)

HSP 1 Score: 158 bits (399), Expect = 6.010e-48
Identity = 77/99 (77.78%), Postives = 84/99 (84.85%), Query Frame = 1 
Query:    7 TAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCANQQ 303
            TAGDK EEGGDDVKSSWPLRAGLHTCYNGGDSG++    + ISK+HLSSDW LQL+ MKLESLVI DQHA VNTF GLVHTARH MGVG T  RCAN++
Sbjct:   12 TAGDKLEEGGDDVKSSWPLRAGLHTCYNGGDSGKQFRKKKQISKSHLSSDWTLQLESMKLESLVIVDQHATVNTFSGLVHTARHAMGVGFTLSRCANRK 110
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BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein n=5 Tax=Acetobacteraceae TaxID=433 RepID=A0A0D6MWA7_ACEAC)

HSP 1 Score: 156 bits (395), Expect = 1.740e-47
Identity = 77/91 (84.62%), Postives = 82/91 (90.11%), Query Frame = 1 
Query:    7 TAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLT 279
            TAGDKPEEGGDDVKSSWPL  GLHTCYNGGDSG+ DG++  ISKN LSSD  LQL+ MK+ESLVIADQHAAVNTFPGLVHTARHTMGVGLT
Sbjct:    8 TAGDKPEEGGDDVKSSWPLCPGLHTCYNGGDSGKLDGDIVPISKNRLSSDCTLQLECMKVESLVIADQHAAVNTFPGLVHTARHTMGVGLT 98
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein ycf68 (Fragment) n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L7H6_LUPAL)

HSP 1 Score: 162 bits (410), Expect = 5.970e-47
Identity = 80/94 (85.11%), Postives = 84/94 (89.36%), Query Frame = 1 
Query:    7 TAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRR 288
            TAGDKPEEGGDDVKSSWPL+AGLHTCYNGGDSGQ+    ELISK+ LSSD  LQL+ MK ESLVIADQHAAVNTFPGLVHTARHTMGVG TRRR
Sbjct:   79 TAGDKPEEGGDDVKSSWPLQAGLHTCYNGGDSGQQARECELISKSRLSSDCSLQLESMKAESLVIADQHAAVNTFPGLVHTARHTMGVGFTRRR 172
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Match: Uncharacterized (protein ycf68 (Fragment) n=6 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9CID7_OPUST)

HSP 1 Score: 154 bits (390), Expect = 2.800e-46
Identity = 81/113 (71.68%), Postives = 88/113 (77.88%), Query Frame = 1 
Query:    1 RGTAGDKPEEGGDDVKSSWPLRAGLHTCYNGGDSGQRDGNVELISKNHLSSDWGLQLDPMKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCANQQWRQSTTVGQRLG 339
            RGTA D  EEGGDDVKS+WPL AG HTCYNG  +G++    E I K+ LSSD  LQL+ MK ESLVIADQHAAVNTFPGLVHTARHTMGVG TRRR AN Q RQ+TTVG   G
Sbjct:   20 RGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLESMKAESLVIADQHAAVNTFPGLVHTARHTMGVGFTRRRFANPQGRQATTVGSATG 132
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10471.449.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.560e-5289.25protein ycf68 (Fragment) n=10 Tax=cellular organis... [more]
Uncharacterized2.640e-5282.86protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 Rep... [more]
Uncharacterized7.420e-5279.28protein ycf68 n=2 Tax=Lupinus albus TaxID=3870 Rep... [more]
Uncharacterized2.030e-4982.65protein ycf68 n=1 Tax=Lupinus albus TaxID=3870 Rep... [more]
Uncharacterized1.450e-4884.95protein n=1 Tax=Novosphingobium sp. PY1 TaxID=1882... [more]
Uncharacterized5.290e-4882.65protein ycf68 (Fragment) n=1 Tax=Lupinus albus Tax... [more]
Uncharacterized6.010e-4877.78protein (Fragment) n=1 Tax=marine metagenome TaxID... [more]
Uncharacterized1.740e-4784.62protein n=5 Tax=Acetobacteraceae TaxID=433 RepID=A... [more]
Uncharacterized5.970e-4785.11protein ycf68 (Fragment) n=1 Tax=Lupinus albus Tax... [more]
Uncharacterized2.800e-4671.68protein ycf68 (Fragment) n=6 Tax=Opuntia streptaca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10471contigEcto-sp9_F_contig10471:4203..4557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score76.6
Seed ortholog evalue3.9e-12
Seed eggNOG ortholog363253.LI1145
EggNOG OGs1NAN7@1224,2DMNG@1,2MF5N@213115,2WVZ8@28221,32SP1@2,430M6@68525
Best tax levelDesulfovibrionales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size355
Cds size165
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10471.449.1prot_Ecto-sp9_F_contig10471.449.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10471 4216..4380 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928258.1956656-UTR-Ecto-sp9_F_contig10471:4202..42151622928258.1956656-UTR-Ecto-sp9_F_contig10471:4202..4215Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10471 4203..4215 -
1692277812.1206923-UTR-Ecto-sp9_F_contig10471:4202..42151692277812.1206923-UTR-Ecto-sp9_F_contig10471:4202..4215Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10471 4203..4215 -
1622928258.2303572-UTR-Ecto-sp9_F_contig10471:4380..45571622928258.2303572-UTR-Ecto-sp9_F_contig10471:4380..4557Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10471 4381..4557 -
1692277812.1444147-UTR-Ecto-sp9_F_contig10471:4380..45571692277812.1444147-UTR-Ecto-sp9_F_contig10471:4380..4557Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10471 4381..4557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928258.2141201-CDS-Ecto-sp9_F_contig10471:4215..43801622928258.2141201-CDS-Ecto-sp9_F_contig10471:4215..4380Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10471 4216..4380 -
1692277812.1340334-CDS-Ecto-sp9_F_contig10471:4215..43801692277812.1340334-CDS-Ecto-sp9_F_contig10471:4215..4380Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10471 4216..4380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10471.449.1

>prot_Ecto-sp9_F_contig10471.449.1 ID=prot_Ecto-sp9_F_contig10471.449.1|Name=mRNA_Ecto-sp9_F_contig10471.449.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=55bp
MKLESLVIADQHAAVNTFPGLVHTARHTMGVGLTRRRCANQQWRQSTTVG
QRLG*
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mRNA from alignment at Ecto-sp9_F_contig10471:4203..4557-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10471.449.1 ID=mRNA_Ecto-sp9_F_contig10471.449.1|Name=mRNA_Ecto-sp9_F_contig10471.449.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=355bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:4203..4557- (Ectocarpus species9 EcSCA_722f female)
AGAGGGACTGCCGGTGATAAGCCGGAGGAAGGTGGGGATGACGTCAAGTC
CTCATGGCCCTTACGGGCTGGGCTACACACGTGCTACAATGGTGGTGACA
GTGGGCAGCGAGACGGCAACGTCGAGCTAATCTCCAAAAACCATCTCAGT
TCGGATTGGGGTCTGCAACTCGACCCCATGAAGTTGGAATCGCTAGTAAT
CGCGGATCAGCATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCG
CCCGTCACACCATGGGAGTTGGTCTTACCCGAAGGCGATGCGCTAACCAG
CAATGGAGGCAGTCGACCACGGTAGGTCAGCGACTGGGGTGAAGTCGTAA
CAAGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10471:4203..4557-

>mRNA_Ecto-sp9_F_contig10471.449.1 ID=mRNA_Ecto-sp9_F_contig10471.449.1|Name=mRNA_Ecto-sp9_F_contig10471.449.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10471:4203..4557- (Ectocarpus species9 EcSCA_722f female)
ATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATAC
GTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTCTTA
CCCGAAGGCGATGCGCTAACCAGCAATGGAGGCAGTCGACCACGGTAGGT
CAGCGACTGGGGTGAATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCA
TGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCA
TGGGAGTTGGTCTTACCCGAAGGCGATGCGCTAACCAGCAATGGAGGCAG
TCGACCACGGTAGGTCAGCGACTGGGGTGA
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