mRNA_Ecto-sp9_F_contig10469.443.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10469.443.1
Unique NamemRNA_Ecto-sp9_F_contig10469.443.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10469.443.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG9_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.460e-9
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 2 
Query:   47 MAAVGLEDTLEVDPLLAGLIAVRNVKGIKHGGMSEMPGLSPQASRFGRFT 196
            MAAVG+ED LEV  L  GLIA R+VK +K GG+S+M GLSPQAS + RFT
Sbjct:    1 MAAVGVEDMLEVGSLHVGLIAARDVKRVKQGGVSDMLGLSPQASPYCRFT 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10469.443.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized6.460e-966.00protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10469contigEcto-sp9_F_contig10469:3635..4560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size745
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10469.443.1prot_Ecto-sp9_F_contig10469.443.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10469 3681..4161 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928257.0167594-UTR-Ecto-sp9_F_contig10469:3634..36801622928257.0167594-UTR-Ecto-sp9_F_contig10469:3634..3680Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10469 3635..3680 +
1692277811.6003258-UTR-Ecto-sp9_F_contig10469:3634..36801692277811.6003258-UTR-Ecto-sp9_F_contig10469:3634..3680Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10469 3635..3680 +
1622928257.0558436-UTR-Ecto-sp9_F_contig10469:4161..45601622928257.0558436-UTR-Ecto-sp9_F_contig10469:4161..4560Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10469 4162..4560 +
1692277811.6239927-UTR-Ecto-sp9_F_contig10469:4161..45601692277811.6239927-UTR-Ecto-sp9_F_contig10469:4161..4560Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10469 4162..4560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928257.0312047-CDS-Ecto-sp9_F_contig10469:3680..38361622928257.0312047-CDS-Ecto-sp9_F_contig10469:3680..3836Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 3681..3836 +
1692277811.6086357-CDS-Ecto-sp9_F_contig10469:3680..38361692277811.6086357-CDS-Ecto-sp9_F_contig10469:3680..3836Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 3681..3836 +
1622928257.043766-CDS-Ecto-sp9_F_contig10469:4017..41611622928257.043766-CDS-Ecto-sp9_F_contig10469:4017..4161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 4018..4161 +
1692277811.616523-CDS-Ecto-sp9_F_contig10469:4017..41611692277811.616523-CDS-Ecto-sp9_F_contig10469:4017..4161Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10469 4018..4161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10469.443.1

>prot_Ecto-sp9_F_contig10469.443.1 ID=prot_Ecto-sp9_F_contig10469.443.1|Name=mRNA_Ecto-sp9_F_contig10469.443.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=100bp
MAAVGLEDTLEVDPLLAGLIAVRNVKGIKHGGMSEMPGLSPQASRFGRFT
PECAEGTLEWGSLGSGTPDVSPRSCQDIGRLSREWRCGASLEADEKPRT*
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mRNA from alignment at Ecto-sp9_F_contig10469:3635..4560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10469.443.1 ID=mRNA_Ecto-sp9_F_contig10469.443.1|Name=mRNA_Ecto-sp9_F_contig10469.443.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=926bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10469:3635..4560+ (Ectocarpus species9 EcSCA_722f female)
CGCACCTGCTTTGTGTTTTCATGTTTCAGGTGCTTGGTTTTCCATCATGG
CTGCTGTCGGACTGGAAGATACGCTCGAGGTGGATCCCCTCCTTGCGGGC
CTAATTGCCGTCAGGAACGTCAAGGGAATCAAGCATGGGGGCATGAGCGA
AATGCCGGGCCTGTCACCTCAAGCCTCGCGGTTCGGCCGGTTTACCCCGG
AGGTGAGTCTCTGCTGTTCTCGTCGGTCCTGCGTACCGCCGTGCAAGTTA
GATGTTGGGTATGGTACTGCTGTAGCAGGCGGCGCATTTTAAATACATGT
AGAATGTTTGGCAAAACTGCACAGCCGAAACGCCGTTCTGGTATGACCTC
TCCCTTTTGGCGATTGTGGATACTGTATCGCAGTGTGCGGAGGGCACGCT
CGAATGGGGAAGCCTTGGGTCGGGAACCCCCGACGTCTCGCCTCGTTCTT
GTCAGGATATTGGACGCCTCTCTCGGGAATGGAGGTGTGGTGCGAGTCTT
GAAGCTGACGAAAAACCGCGTACCTAGATTACACTTACCGTAAGAGTCGG
AGGGTTGGCACCGGGTGCGATCGTTTTTTTAGTTGTTTTTTTCTCGGTTT
TTTTATCGTACCCCGGTTCCATCTCTCCGACCGGTGCGATCCCCGATGAA
ATAAATACACACAGGTGTTGCGGGGGGTGGGGAGAAGGAAGGAGAGTAGA
CGGAGTTGTGACAATCGGTAGTTGACAATGCTATTGATCAGTATACCGTT
GTTTAGGTACCGTTGTTGTTGGTTGGAAGCACACCGGTAACGGCAACGTA
GGCTGGCACGTAACAGCTTTCCATGCAGCGAGTGGTCTTGTGTTTGATGC
GAGTTTGGCTATGGCGTGACAACAACAAACCATGCCGTTTCCATCTGAGG
TGGTGCCAGTACACACGGTATCAATT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10469:3635..4560+

>mRNA_Ecto-sp9_F_contig10469.443.1 ID=mRNA_Ecto-sp9_F_contig10469.443.1|Name=mRNA_Ecto-sp9_F_contig10469.443.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=600bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10469:3635..4560+ (Ectocarpus species9 EcSCA_722f female)
ATGGCTGCTGTCGGACTGGAAGATACGCTCGAGGTGGATCCCCTCCTTGC
GGGCCTAATTGCCGTCAGGAACGTCAAGGGAATCAAGCATGGGGGCATGA
GCGAAATGCCGGGCCTGTCACCTCAAGCCTCGCGGTTCGGCCGGTTTACC
CCGGAGATGGCTGCTGTCGGACTGGAAGATACGCTCGAGGTGGATCCCCT
CCTTGCGGGCCTAATTGCCGTCAGGAACGTCAAGGGAATCAAGCATGGGG
GCATGAGCGAAATGCCGGGCCTGTCACCTCAAGCCTCGCGGTTCGGCCGG
TTTACCCCGGAGTGTGCGGAGGGCACGCTCGAATGGGGAAGCCTTGGGTC
GGGAACCCCCGACGTCTCGCCTCGTTCTTGTCAGGATATTGGACGCCTCT
CTCGGGAATGGAGGTGTGGTGCGAGTCTTGAAGCTGACGAAAAACCGCGT
ACCTAGTGTGCGGAGGGCACGCTCGAATGGGGAAGCCTTGGGTCGGGAAC
CCCCGACGTCTCGCCTCGTTCTTGTCAGGATATTGGACGCCTCTCTCGGG
AATGGAGGTGTGGTGCGAGTCTTGAAGCTGACGAAAAACCGCGTACCTAG
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