mRNA_Ecto-sp9_F_contig10447.425.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10447.425.1
Unique NamemRNA_Ecto-sp9_F_contig10447.425.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL58_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 3.630e-41
Identity = 78/90 (86.67%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 PLHMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKQVDI-------GVVDTEGVALCAAIEGCSEGCVYLLLRRQGGNANTGT 249
            PL MAVY+GHL+VVRELVHWYGTDRCTSDGGALALATAASRK VDI       GVVDTEGVALCAAIEGCSE CVYLLLRRQGGNANTGT
Sbjct:  584 PLGMAVYHGHLEVVRELVHWYGTDRCTSDGGALALATAASRKHVDIVAFLCNAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGNANTGT 673
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHQ8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 9.960e-39
Identity = 73/90 (81.11%), Postives = 74/90 (82.22%), Query Frame = 1 
Query:    1 PLHMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKQVDI-------GVVDTEGVALCAAIEGCSEGCVYLLLRRQGGNANTGT 249
            PL  AVYNGHLKVV ELVHWYGTDRCT+DGG LALATAASRK VDI       GVVDTEGVALCAAIEGCSE CVYLLLRRQGGN N  T
Sbjct:  163 PLGTAVYNGHLKVVSELVHWYGTDRCTNDGGVLALATAASRKHVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGGNINVST 252
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 7.970e-27
Identity = 59/73 (80.82%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:   46 ELVHWYGTDRCTSDGGALALATAASRKQVDI-------GVVDTEGVALCAAIEGCSEGCVYLLLRRQGGNANT 243
            ELV+WYGTD CTSDGGALALATAASR QVDI       GVVDTEGVALCAAIEGCSE CVYLLLRRQG  A+T
Sbjct:  568 ELVYWYGTDGCTSDGGALALATAASRNQVDIVTFLCDAGVVDTEGVALCAAIEGCSEACVYLLLRRQGRKAST 640
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L0_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.410e-23
Identity = 64/123 (52.03%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:   43 RELVHWYGTDRCTSDGGALALATAASRKQVDI-------GVVDTEGVALCAAI-----------------------------------------------EGCSEGCVYLLLRRQGGNANTGT 249
            RELV+WYG DRCTSDGGALAL TAASRK VDI       GVVDTEGVALCAAI                                               EGCSE CVYLLLRRQGGNANTGT
Sbjct:  184 RELVYWYGIDRCTSDGGALALVTAASRKHVDIVTFLRDAGVVDTEGVALCAAIXWRCTMDIWKWSASLCIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIEGCSEACVYLLLRRQGGNANTGT 306
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.710e-19
Identity = 51/87 (58.62%), Postives = 58/87 (66.67%), Query Frame = 1 
Query:    1 PLHMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKQVDI-------GVVDTEGVALCAAIEGCSEGCVYLLLRRQGGNAN 240
            PL +A  NG L VVREL   +G D C+ DGGA AL  AAS+ QVDI       GVVD EG+ALCAA+EG  E C+ LLLR QG NAN
Sbjct:  148 PLDVAAENGQLGVVRELEQRFGIDGCSCDGGAQALVEAASQNQVDIVTFLFDNGVVDAEGIALCAAVEGRREECIELLLRTQGCNAN 234
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP44_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 7.070e-15
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 1 
Query:    1 PLHMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKQ-------VDIGVVDTEGVALCAAIEGCSEGCVYLLLRRQGGNAN 240
            PL +A + GHL VV+ELV  +G D C+ +G   AL TAA           +D GV DT+G ALC AIEG SE C+ LL+ R+GGNA+
Sbjct:  182 PLDIATHGGHLGVVQELVQRFGVDGCSDEGAIGALETAAYENHQTILTFLLDAGVKDTDGTALCDAIEGRSEACLKLLVGRRGGNAH 268
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: Uncharacterized (protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.240e-13
Identity = 40/85 (47.06%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    1 PLHMAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKQ-------VDIGVVDTEGVALCAAIEGCSEGCVYLLLRRQGGN 234
            PL +A + GHL VV+ELV  +G D C  +G   AL TAA           +D GV+DT+G ALC AIEG +E C+ LL+ R+GG+
Sbjct:  195 PLDIATHGGHLGVVQELVQRFGIDGCADEGAIGALETAAYENHEAIMTFLLDAGVIDTDGTALCDAIEGRNEACLKLLVSRRGGS 279
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: EsV-1-1 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH66_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.160e-6
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 3 
Query:   51 RALVRNRPLYKRRRRTGSRNGRFSQTGGHR 140
            R LVRNR LYKRRRRTGSRNGRFSQ+ GHR
Sbjct:  165 RPLVRNRSLYKRRRRTGSRNGRFSQSRGHR 194
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BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Match: EsV-1-199 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL4_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 1.280e-5
Identity = 36/82 (43.90%), Postives = 46/82 (56.10%), Query Frame = 1 
Query:    1 PLHMAVYNGHLKVVRELVHWYGTDRCT-SDGGALALATAASRKQVDI-------GVVDTEGVALCAAIEGCSEGCVYLLLRR 222
            PL +A     + +VRELV   G + C  SDGG +AL  AA    +DI       GVVD+ G+ALCAA+    E  V LLL+R
Sbjct:  183 PLDVATEKFRVDIVRELVDDVGIEGCGGSDGGMVALRLAAQNGHLDILHILHERGVVDSSGLALCAALMHGGEKTVKLLLQR 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10447.425.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
Uncharacterized3.630e-4186.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized9.960e-3981.11protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.970e-2780.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.410e-2352.03protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.710e-1958.62protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
EsV-1-17.070e-1549.43n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
Uncharacterized1.240e-1347.06protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHA... [more]
EsV-1-15.160e-686.67n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
EsV-1-1991.280e-543.90n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10447contigEcto-sp9_F_contig10447:3401..4253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score79.0
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog654926.Q8QNQ8_ESV1K
GOsGO:0008150,GO:0010941,GO:0016032,GO:0019048,GO:0019050,GO:0019054,GO:0033668,GO:0035821,GO:0039526,GO:0042981,GO:0043067,GO:0043069,GO:0044003,GO:0044068,GO:0044403,GO:0044419,GO:0044531,GO:0044532,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051701,GO:0051704,GO:0051817,GO:0052040,GO:0052041,GO:0052150,GO:0052248,GO:0052433,GO:0052490,GO:0060548,GO:0065007
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGs4QB1T@10239,4QUVA@35237
COG Functional cat.S
Best tax leveldsDNA viruses, no RNA stage
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size290
Cds size276
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10447.425.1prot_Ecto-sp9_F_contig10447.425.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10447 3410..4248 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.2397115-UTR-Ecto-sp9_F_contig10447:3400..34091622928254.2397115-UTR-Ecto-sp9_F_contig10447:3400..3409Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10447 3401..3409 +
1692277810.4317362-UTR-Ecto-sp9_F_contig10447:3400..34091692277810.4317362-UTR-Ecto-sp9_F_contig10447:3400..3409Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10447 3401..3409 +
1622928254.287527-UTR-Ecto-sp9_F_contig10447:4248..42531622928254.287527-UTR-Ecto-sp9_F_contig10447:4248..4253Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10447 4249..4253 +
1692277810.4758935-UTR-Ecto-sp9_F_contig10447:4248..42531692277810.4758935-UTR-Ecto-sp9_F_contig10447:4248..4253Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10447 4249..4253 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928254.2542899-CDS-Ecto-sp9_F_contig10447:3409..36441622928254.2542899-CDS-Ecto-sp9_F_contig10447:3409..3644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10447 3410..3644 +
1692277810.451127-CDS-Ecto-sp9_F_contig10447:3409..36441692277810.451127-CDS-Ecto-sp9_F_contig10447:3409..3644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10447 3410..3644 +
1622928254.2685893-CDS-Ecto-sp9_F_contig10447:4207..42481622928254.2685893-CDS-Ecto-sp9_F_contig10447:4207..4248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10447 4208..4248 +
1692277810.4660058-CDS-Ecto-sp9_F_contig10447:4207..42481692277810.4660058-CDS-Ecto-sp9_F_contig10447:4207..4248Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10447 4208..4248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10447.425.1

>prot_Ecto-sp9_F_contig10447.425.1 ID=prot_Ecto-sp9_F_contig10447.425.1|Name=mRNA_Ecto-sp9_F_contig10447.425.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
MAVYNGHLKVVRELVHWYGTDRCTSDGGALALATAASRKQVDIGVVDTEG
VALCAAIEGCSEGCVYLLLRRQGGNANTGTTTSRTELSSGV*
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mRNA from alignment at Ecto-sp9_F_contig10447:3401..4253+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10447.425.1 ID=mRNA_Ecto-sp9_F_contig10447.425.1|Name=mRNA_Ecto-sp9_F_contig10447.425.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=853bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:3401..4253+ (Ectocarpus species9 EcSCA_722f female)
CCGTTACATATGGCGGTGTACAATGGACACCTGAAAGTGGTCCGCGAGCT
CGTGCATTGGTACGGAACCGACCGCTGTACAAGCGACGGCGGCGCACTGG
CTCTCGCAACGGCCGCTTCTCGCAAACAGGTGGACATCGGTGTGGTTGAT
ACGGAGGGCGTGGCCCTGTGTGCCGCCATTGAGGGATGTAGCGAGGGATG
CGTCTACCTTCTGCTGCGGAGACAGGGGGGAAACGCCAACACAGGTACGC
GTGCCTACGTCAACATGGACCACGGTACTTTCCCGGAAACCTATGACGAA
TTCGTGTACACAGTCAATCTGGGAAGCTTTCATGCTCCCAGATTCGCGCG
CTTGCTACTGGAAGCCGGGGCGGACGCGACATCGGGCGTTCGGTTTCCGT
GCGACAGTGATGAGGGGGAAGAACACGAAGGGTTCATCGGCACGCCCCTA
GACTTGGCTACATCCTACTTCCGCAGATTCAGTCCAATGAGGGTCCACCG
CGAGATGGTGCGGGGGCTGAAGGGTGTCATCCGCCTGCTGCGACAGGAGG
AGGCTGTTCACTCGGTGTCCTGGACGTGGCCAATCGACACCGGTCGTTCT
GCAGAGCGTGCGTCCCGGAAGAAATCAGCATCGATCGCTCGCATGCTCCC
GCTTCTGCGGCGGAGGGCGGCAAAGCCTCGTGTGCTCTTGGCAGTCATGT
CTAGGCGCGTGGTGCTGTTTGATTCTTCGGTATTTTCTGAAGACAACACA
CAATATGAAAGAAGTTGGCTGAAATGCCTTTACCCGCCCCCCGTTTGTTT
TCGACAGGTACAACAACAAGCAGGACGGAGCTTTCCTCGGGAGTGTAATA
CCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10447:3401..4253+

>mRNA_Ecto-sp9_F_contig10447.425.1 ID=mRNA_Ecto-sp9_F_contig10447.425.1|Name=mRNA_Ecto-sp9_F_contig10447.425.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10447:3401..4253+ (Ectocarpus species9 EcSCA_722f female)
ATGGCGGTGTACAATGGACACCTGAAAGTGGTCCGCGAGCTCGTGCATTG
GTACGGAACCGACCGCTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAA
CGGCCGCTTCTCGCAAACAGGTGGACATCGGTGTGGTTGATACGGAGGGC
GTGGCCCTGTGTGCCGCCATTGAGGGATGTAGCGAGGGATGCGTCTACCT
TCTGCTGCGGAGACAGGGGGGAAACGCCAACACAGATGGCGGTGTACAAT
GGACACCTGAAAGTGGTCCGCGAGCTCGTGCATTGGTACGGAACCGACCG
CTGTACAAGCGACGGCGGCGCACTGGCTCTCGCAACGGCCGCTTCTCGCA
AACAGGTGGACATCGGTGTGGTTGATACGGAGGGCGTGGCCCTGTGTGCC
GCCATTGAGGGATGTAGCGAGGGATGCGTCTACCTTCTGCTGCGGAGACA
GGGGGGAAACGCCAACACAGGTACAACAACAAGCAGGACGGAGCTTTCCT
CGGGAGTGTAAGTACAACAACAAGCAGGACGGAGCTTTCCTCGGGAGTGT
AA
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