mRNA_Ecto-sp9_F_contig104.390.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: PPIase (cyclophilin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC7_9PHAE) HSP 1 Score: 535 bits (1377), Expect = 6.870e-182 Identity = 302/371 (81.40%), Postives = 314/371 (84.64%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSCEKLSGDLSADDCSDCQDVKRLEKELRDAKRKCRKNRGELRGERAELDLLENDSKNNDXXXXXXXXXXXXXXXXXXXXXXRRVDSDSSXXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGGEKQESDG--TYTTGRIIEETKQSERAQHPTVEYPEYTEFVPPTI 1107
MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHD+VM+G SKNGEGIYLGTSSNQWDDGKNPS+EPDESSYNHFFKNHFDTQGNEGIDIKEG+RYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENN YAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKL PEDSCEKLSGD+S DDCSDCQDV+RLEKELR+AKR+CRKN+GE RA LDLLEND KNNDXXXXXXXXXXXXXXXXXXXXXX GEKQESDG + TGRIIEETK+SERAQHPTVEYP+YTEFVPPTI
Sbjct: 465 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDYVMNGSSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQGNEGIDIKEGARYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNGYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLKPEDSCEKLSGDISVDDCSDCQDVERLEKELREAKRECRKNKGE----RAVLDLLENDGKNNDXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------GEKQESDGKGAHVTGRIIEETKKSERAQHPTVEYPKYTEFVPPTI 794
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: FirrV-1-B30 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L7_ECTSI) HSP 1 Score: 437 bits (1124), Expect = 1.670e-149 Identity = 211/213 (99.06%), Postives = 212/213 (99.53%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSCEKLSGDLSA 639
MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPS+EPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPE SCEKLSGDLSA
Sbjct: 161 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSDEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEGSCEKLSGDLSA 373
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: right-handed (parallel beta-helix repeat-containing protein n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI00036AEC55) HSP 1 Score: 229 bits (583), Expect = 4.570e-68 Identity = 111/204 (54.41%), Postives = 141/204 (69.12%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSC 612
M + N GGECVR+RY+VT +++++N NCG +DF + G KNGE IY+GTSSNQWDDGKNP+ PD S++N N F T GNE +DIKEG+ YN+VE N C+GQ+DPNSA D+RGD NIFR+N DN GAG+R+GG+ +DG QYG NN+VY NLL NN AG+K+ +PQ VC N + S A PE SC
Sbjct: 164 MSLKNAGGECVRLRYYVTEAEIFDNTFYNCGVYDFKFNNGGKNGEAIYVGTSSNQWDDGKNPTGGPDPSNHNWIHHNKFLTNGNECVDIKEGAEYNLVEYNICSGQQDPNSAGFDSRGDHNIFRYNVSHDNKGAGVRLGGNTVDGRQYGVNNQVYGNLLYNNAQAGVKLMAAPQEKVCGNPTSDNTEGDIMGSSAMSYDPELSC 367
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_38_12 TaxID=1802061 RepID=A0A1F7IR59_9BACT) HSP 1 Score: 210 bits (535), Expect = 7.130e-62 Identity = 107/204 (52.45%), Postives = 135/204 (66.18%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSC 612
M I N GGECVR+RY+ +++ N IT+CG HD+ D G KNGEG+Y+GT+ Q DDGKNP+N+ DES+ N N FDTQGNE +DIKE S+YNIVE+N CTGQKDP S LD+RG NIFR+N N GAGIR+GG +D + NEVYEN++ NN GIKI +PQG +C N + G+ + Y E P C
Sbjct: 91 MTIKNAGGECVRLRYYAQNNEIAYNTITSCGRHDYKFDDGGKNGEGVYIGTAPEQRDDGKNPTNDNDESNGNWIHHNFFDTQGNECVDIKENSKYNIVENNECTGQKDPESGGLDSRGGYNIFRYNNIYGNSGAGIRLGGDTVDENIM---NEVYENIIVNNKKGGIKIMTAPQGKMCDNIMSGNDGGNAVGEYGEDYDPTKGC 291
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: F5/8 (type C domain-containing protein n=1 Tax=Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_02_49_25 TaxID=1802305 RepID=A0A1G2MDL9_9BACT) HSP 1 Score: 218 bits (554), Expect = 7.140e-62 Identity = 103/205 (50.24%), Postives = 138/205 (67.32%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSCE 615
M + N GGEC+R+RYF T S++ N I NCG +DF+ + G KNGEGIY+GTS+ QW DGKNP+N+PDE+ N N+ DTQGNE IDIKEG+ NI+E N C GQKD S D+RGD NIFR+N ++G GIR+GG ++G QYG+NN+VYEN + +N GI+ +PQG +C N + G+ +A + P SC+
Sbjct: 1 MTLKNSGGECLRLRYFATKSEIAYNTIANCGAYDFLFNAGGKNGEGIYIGTSNKQWGDGKNPTNDPDETKDNLVHHNYIDTQGNECIDIKEGATANIIEYNTCRGQKDSESGGFDSRGDGNIFRYNDVRGSVGGGIRLGGASVNGIQYGKNNDVYENTIVDNKNGGIRFQTTPQGKICGNTMSGNTTGDSAGGFASEFDPIKSCD 205
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: DUF1565 (domain-containing protein n=1 Tax=Hahella sp. CCB-MM4 TaxID=1926491 RepID=A0A261GHV7_9GAMM) HSP 1 Score: 212 bits (539), Expect = 2.090e-61 Identity = 106/206 (51.46%), Postives = 136/206 (66.02%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSCEK 618
M I N GGECVR+RY VT ++++ N NCG +DF DG KNGE IY+GTSS QWDDGKNPS +PD S+YN N+F T+GNE +DIKEG+ +N+VE+N C GQ+DP S DARGD NI R+N N GAGIR+GG+ ++G QYG NEVY N + +ND +GIKI PQ VC N + + + A P C++
Sbjct: 170 MRIRNAGGECVRLRYHVTRAEIFGNTFYNCGAYDFQFDGRGKNGEAIYIGTSSEQWDDGKNPSADPDHSNYNWVHHNYFLTRGNECVDIKEGAAHNLVENNICAGQQDPASGGFDARGDYNIIRYNVSYSNKGAGIRVGGNMVNGRQYGVFNEVYGNKIFDNDNSGIKIMTYPQRYVCGNSMTDNSKGNITGESATFYDPATGCQQ 375
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: Secreted (protein n=2 Tax=Oleiphilus messinensis TaxID=141451 RepID=A0A1Y0IFB0_9GAMM) HSP 1 Score: 207 bits (526), Expect = 3.230e-59 Identity = 97/183 (53.01%), Postives = 127/183 (69.40%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDIL 549
M + N GGECVR++YFVT ++++ N I NCG +DF G KNGEGIY+GT+ QWD+GKNPS +PD S+ N + N F T GNE +DIKEG+ YN++E N C Q DPNS DARGD+NIFR+N N GAG+R+GG G QYG NN+VY N++ N +AG+K+ PQ +CSN +
Sbjct: 186 MILQNAGGECVRLKYFVTQAEIFGNLIRNCGVYDFQFAAGGKNGEGIYIGTAPEQWDNGKNPSADPDHSNGNWVWGNKFYTYGNECVDIKEGAEYNLIEYNACQNQLDPNSGGFDARGDNNIFRYNIAHTNTGAGVRLGGDLHQGRQYGINNQVYGNIIYGNGHAGVKVMSYPQDQICSNMLF 368
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: DUF1565 (domain-containing protein n=1 Tax=Chloroflexi bacterium AL-N15 TaxID=2686370 RepID=UPI0019FF4931) HSP 1 Score: 208 bits (529), Expect = 1.220e-58 Identity = 103/214 (48.13%), Postives = 139/214 (64.95%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFV---MDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSCEKLSGDL 633
M N GGEC+R+RYF +++ + NCG D+ GG KNGE IY+GTS+NQW DGKNP+NEPD+S+ N N +TQGNE +DIKEG+ NIVE N CTGQKD NSA LD+RGD N FR+N N+G G+R+GG +DG QYG+NN VY+N++ +N G+K ++PQG +C N + + +A + P+ SC +G L
Sbjct: 159 MTFKNAGGECLRLRYFAQNNEIAYSTFLNCGQDDYPGGEWAGGGKNGEAIYIGTSNNQWGDGKNPTNEPDQSNNNWVHNNFMNTQGNECVDIKEGATGNIVEYNECTGQKDENSAGLDSRGDGNTFRYNETYGNVGGGVRLGGALVDGEQYGKNNNVYDNIIYDNIAGGVKFMVTPQGKICGNTMWNNTGGDSFGDFANQFDPKASCSGSAGAL 372
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: Uncharacterized (protein n=1 Tax=Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_35_13 TaxID=1802055 RepID=A0A1F7IHP9_9BACT) HSP 1 Score: 199 bits (506), Expect = 2.350e-56 Identity = 107/204 (52.45%), Postives = 133/204 (65.20%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSC 612
M+I N GGECVR+RYF +++ N I CG DF GG KNGEGIY+GT+ Q DGKNP+++ DES+ N N +TQGNE +DIKEGS NIVE N CTGQKD SA LD+RG NIFR+N NLGAG+R+GG D G NN+VYEN ++NN GIK +PQG +C N + G+K S AE+ +P SC
Sbjct: 191 MNIKNAGGECVRLRYFAQNNEIAYNSINRCGIVDFEFKGGGKNGEGIYIGTAPEQLKDGKNPTSDIDESNNNLIHHNTINTQGNECVDIKEGSSGNIVEYNNCTGQKDKESAGLDSRGSKNIFRYNEVYGNLGAGVRLGG---DEDNDGINNDVYENTIKNNVSGGIKFQRAPQGKICGNKMEGNKGGDSVGSEAEEFNPTKSC 391
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Match: Secreted (protein n=3 Tax=Candidatus Daviesbacteria TaxID=1752718 RepID=A0A0G1AW46_9BACT) HSP 1 Score: 199 bits (507), Expect = 5.320e-56 Identity = 103/211 (48.82%), Postives = 130/211 (61.61%), Query Frame = 1
Query: 1 MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGTSSNQWDDGKNPSNEPDESSYNHFFKNHFDTQGNEGIDIKEGSRYNIVEDNYCTGQKDPNSACLDARGDSNIFRFNTCEDNLGAGIRIGGHKIDGHQYGQNNEVYENLLENNDYAGIKITMSPQGAVCSNDILGSKYDSRGSSYAEKLSPEDSCEKLSGDL 633
M + N GGEC+R RYF T ++V +N +TNCG +DF + G KNGEG+Y+GT+ Q DGKNP+++ D+S+ N N F+TQGNE +DIKE S NI+E+N CTGQKDPNSA LD RG NIFR N N GAGIR+GG D G N +Y N + NN GIK SPQG +C N G+ + SY +P C G L
Sbjct: 171 MTLKNAGGECMRFRYFATKNEVASNTVTNCGVYDFKFNAGGKNGEGVYIGTAPEQLTDGKNPTSDRDQSNDNWIHNNTFNTQGNECVDIKEASSGNIIENNKCTGQKDPNSAGLDTRGSKNIFRSNETYGNTGAGIRLGG---DATSDGTGNHIYNNKISNNTAGGIKFQRSPQGEICGNSFSGNSSGNSVGSYGSDYNPTSVCTAGIGSL 378 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig104.390.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig104.390.1 >prot_Ecto-sp9_F_contig104.390.1 ID=prot_Ecto-sp9_F_contig104.390.1|Name=mRNA_Ecto-sp9_F_contig104.390.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=370bp MDINNCGGECVRMRYFVTYSQVYNNRITNCGTHDFVMDGGSKNGEGIYLGback to top mRNA from alignment at Ecto-sp9_F_contig104:42532..51090- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig104.390.1 ID=mRNA_Ecto-sp9_F_contig104.390.1|Name=mRNA_Ecto-sp9_F_contig104.390.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8559bp|location=Sequence derived from alignment at Ecto-sp9_F_contig104:42532..51090- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig104:42532..51090- >mRNA_Ecto-sp9_F_contig104.390.1 ID=mRNA_Ecto-sp9_F_contig104.390.1|Name=mRNA_Ecto-sp9_F_contig104.390.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=2220bp|location=Sequence derived from alignment at Ecto-sp9_F_contig104:42532..51090- (Ectocarpus species9 EcSCA_722f female)back to top |