mRNA_Ecto-sp9_F_contig1037.358.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Similar (to deubiquitinating enzyme 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSR8_ECTSI) HSP 1 Score: 108 bits (271), Expect = 8.490e-25 Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 VYIYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTRQSG 333
V +YL+RFAY GE+ LT +V IP ID+AP P T A ++ +Y LNGVVHH G+T +GH+ A VRL G W RYDD V V +VRT+ A+IL+YTR+SG
Sbjct: 1318 VLLYLMRFAYT--TRGEK-LTHDVYIPKEIDMAPYIGPPTTRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 1425
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYB9_ECTSI) HSP 1 Score: 105 bits (261), Expect = 1.820e-23 Identity = 54/111 (48.65%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 1 VYIYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTRQSG 333
V +YL+RFAY GE+ L +V IP ID+AP P + A ++ +Y LNGVVHH G+T +GH+ A VRL G W RYDD V V +VRT+ A+IL+YTR+SG
Sbjct: 798 VLLYLMRFAYT--TRGEK-LIHDVYIPKEIDMAPYIGPPTSRAGARQPDMYDLNGVVHHIGQTTNKGHYVAFVRLPGEGWLRYDDAKVTGVTDSDVRTQNALILSYTRRSG 905
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E3_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 1.260e-9 Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 2
Query: 140 NPPSTASTELYTTGERPSAEGTSLLVCAWRGTNGNGTTTL 259
NPPSTASTELYTTG RPSAEGTSL VCAW G G+ T +
Sbjct: 17 NPPSTASTELYTTGARPSAEGTSLPVCAWGGRIGDDDTAV 56
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Hypothetical (protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z4P0_9EUKA) HSP 1 Score: 59.3 bits (142), Expect = 1.670e-7 Identity = 32/106 (30.19%), Postives = 58/106 (54.72%), Query Frame = 1
Query: 7 IYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTR 324
I+L RF E A G + + ++V++PF++D++P P ++SS+YGL G+V H G +G GH+ A +W + D + + + +V ++A + Y R
Sbjct: 423 IHLKRF--EATARGFQKVGKHVRVPFTLDMSPFCIPPKPGDPSRQSSMYGLTGIVVHSGG-MGGGHYVAYTLRGPGRWYYFSDRSYSASSAPDVTKKQAYLCFYKR 525
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7S4K0_9FUNG) HSP 1 Score: 57.0 bits (136), Expect = 1.080e-6 Identity = 31/107 (28.97%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 7 IYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTRQ 327
++L RF ++ R ++E +Q P ID+AP + ++ Y L GV+ H G + GH+ + V+ QW + DD V +L+ V +++A IL Y ++
Sbjct: 321 VHLKRFTFDLERGYMRKISERIQYPEVIDMAPYISVEEKQKLQGKTK-YRLYGVLVHLGHSCNSGHYYSYVKNSDGQWYQMDDEMVEKASLKEVLSQQAYILFYAQE 426
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: calphotin-like (n=1 Tax=Salvia hispanica TaxID=49212 RepID=UPI002009186B) HSP 1 Score: 55.5 bits (132), Expect = 4.040e-6 Identity = 29/89 (32.58%), Postives = 44/89 (49.44%), Query Frame = 1
Query: 58 LTENVQIPFSIDLAPLTAKPGT--AASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAY 318
+ ++V P +DL P + T + K Y L ++ H GET GH+ + +R+ N+W RYDDT + V V + A IL Y
Sbjct: 1335 INKHVSFPPLLDLLPFAPRKVTFFTSIDKMQIYYELYAIIVHEGETPAAGHYYSFIRVNANEWYRYDDTQITAVDEEEVFKQMAYILFY 1423
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=23 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8ZYS5_SALSN) HSP 1 Score: 54.7 bits (130), Expect = 7.330e-6 Identity = 30/90 (33.33%), Postives = 45/90 (50.00%), Query Frame = 1
Query: 58 LTENVQIPFSIDLAPLTAKPGT---AASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAY 318
+ ++V P +DL P T + T + K Y L +V H GET GH+ + +RL N+W +YDD+ + V V + A IL Y
Sbjct: 961 IKKHVSFPPQLDLKPFTPRKVTFPFTSVGKMHIYYELYAIVVHEGETPVAGHYYSIIRLNANEWYKYDDSRITAVDEEEVFKQMAYILFY 1050
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: Ubiquitin (carboxyl-terminal hydrolase n=2 Tax=Dufourea novaeangliae TaxID=178035 RepID=A0A154P806_DUFNO) HSP 1 Score: 53.1 bits (126), Expect = 2.490e-5 Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 1
Query: 1 VYIYLLRFAYEGGASGERTLTENVQIPFS-IDLAPLTAKPGTAA--SHKESSLYGLNGVVHHRGETIGRGHFTA-CVRLEGNQWQRYDDTTVANVALRNVRTEE--AIILAYT 321
+ I+L RFA GG +R V P + ++L P T+A S+ S Y L + +H G T+ GH+TA C N+W +YDD TV V++ VR++ A +L YT
Sbjct: 860 IVIHLNRFAESGGWLEKRNTA--VDFPLTGLNLKPYLVMDSTSATISNIRSYNYSLYAMSNHYG-TMEGGHYTAFCKNSNQNKWYKYDDQTVTEVSVNQVRSQNTSAYLLFYT 969
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein n=9 Tax=Salvia splendens TaxID=180675 RepID=A0A4D9B205_SALSN) HSP 1 Score: 53.1 bits (126), Expect = 2.540e-5 Identity = 28/92 (30.43%), Postives = 45/92 (48.91%), Query Frame = 1
Query: 52 RTLTENVQIPFSIDLAPLTAKPGT---AASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAY 318
+ + ++V P +DL P T + T + K Y L ++ H GET GH+ + +RL N+W +YDD+ + V + A IL Y
Sbjct: 1134 KKIKKHVSFPPQLDLIPFTPRKVTFPFTSVDKMHLYYELYAIIVHEGETPVAGHYYSFIRLNANEWYKYDDSRITAADEEEVFKQMAYILFY 1225
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Match: USP (domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZW96_DICPU) HSP 1 Score: 52.0 bits (123), Expect = 5.070e-5 Identity = 28/106 (26.42%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 7 IYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLYGLNGVVHHRGETIGRGHFTACVRLEGNQWQRYDDTTVANVALRNVRTEEAIILAYTR 324
+ + RF++ G+ +++Q ++DL+P + + S+Y LN V+ H G++ GH+ V+ W + DD+ V+ V+L+ V +A +L YT+
Sbjct: 231 VQIKRFSFLNSYGGKDN--KHIQFCQTLDLSPYMTQTN------DHSIYDLNSVLVHLGDSTNSGHYYCYVKGSNGVWYKMDDSMVSQVSLQTVLRSKAYMLFYTK 328 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1037.358.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1037.358.1 >prot_Ecto-sp9_F_contig1037.358.1 ID=prot_Ecto-sp9_F_contig1037.358.1|Name=mRNA_Ecto-sp9_F_contig1037.358.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=112bp VYIYLLRFAYEGGASGERTLTENVQIPFSIDLAPLTAKPGTAASHKESSLback to top mRNA from alignment at Ecto-sp9_F_contig1037:13988..15383+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1037.358.1 ID=mRNA_Ecto-sp9_F_contig1037.358.1|Name=mRNA_Ecto-sp9_F_contig1037.358.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1396bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1037:13988..15383+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1037:13988..15383+ >mRNA_Ecto-sp9_F_contig1037.358.1 ID=mRNA_Ecto-sp9_F_contig1037.358.1|Name=mRNA_Ecto-sp9_F_contig1037.358.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=672bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1037:13988..15383+ (Ectocarpus species9 EcSCA_722f female)back to top |