mRNA_Ecto-sp9_F_contig1036.354.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1036.354.1
Unique NamemRNA_Ecto-sp9_F_contig1036.354.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1036.354.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z9_ECTSI)

HSP 1 Score: 361 bits (926), Expect = 3.760e-125
Identity = 202/212 (95.28%), Postives = 202/212 (95.28%), Query Frame = 1 
Query:    1 MSTDASASAPVVKDAAPVNAAPALAAGTPAATGANSVASTANQILFKNELYTSMKQKTMDQELMARFNREAQEEEKRKFEKARANVARLENKRKASC-VGDMVGPSGCDPSECSSASVAVDLGPQDTVRDVKKRLIAEAGWRDELPSDFGLFNDVSEEPLMDGQSIDAALAPSKPSSAKKAVSRRGGSRATAAASIRLPRPYVGVLWAARLG 633
            MSTDASASAPVVKDAAPVNA PALAAGTPAATGANSVASTANQILFKNELYTSMKQKTMDQELMARFNREA EEEKRKFEKARA VARLENKRK    VGDMVGP GCDPSECSSASVAVDLG QDTVRDVKKRLIAEAGWRDELPSDFGLFNDVSEEPLMDGQSIDAALAPSKPSSAKK VSRRGGSRATAAASIRLPRPYVGVLWAARLG
Sbjct:    1 MSTDASASAPVVKDAAPVNAVPALAAGTPAATGANSVASTANQILFKNELYTSMKQKTMDQELMARFNREAHEEEKRKFEKARAKVARLENKRKVLIGVGDMVGPPGCDPSECSSASVAVDLGLQDTVRDVKKRLIAEAGWRDELPSDFGLFNDVSEEPLMDGQSIDAALAPSKPSSAKKGVSRRGGSRATAAASIRLPRPYVGVLWAARLG 212
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BLAST of mRNA_Ecto-sp9_F_contig1036.354.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B8_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.260e-64
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 1 
Query:  292 VGDMVGPSGCDPSECSSASVAVDLGPQDTVRDVKKRLIAEAGWRDELPSDFGLFNDVSEEPLMDGQSIDAALAPSKPSSAKKAVSRRGGSRATAAASIRLPRPYVGVLWAARLG 633
            VGDMVGP GCDPSE SSASVAVD+GPQDTV DVKKRLIA AGW DELPSDFGLFNDVS+EPLMDGQS+DAALAP+KPSS+KKAVSRRGGSRATAAASIRLPRPYVGVLWAARLG
Sbjct:   20 VGDMVGPPGCDPSEYSSASVAVDVGPQDTVWDVKKRLIAVAGWTDELPSDFGLFNDVSDEPLMDGQSVDAALAPNKPSSSKKAVSRRGGSRATAAASIRLPRPYVGVLWAARLG 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1036.354.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.760e-12595.28protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.260e-6491.23protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1036contigEcto-sp9_F_contig1036:9296..10759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_000650.1
Exons3
Model size636
Cds size636
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1036.354.1prot_Ecto-sp9_F_contig1036.354.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1036 9296..10759 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928240.028098-CDS-Ecto-sp9_F_contig1036:9295..94361622928240.028098-CDS-Ecto-sp9_F_contig1036:9295..9436Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1036 9296..9436 +
1692277806.547867-CDS-Ecto-sp9_F_contig1036:9295..94361692277806.547867-CDS-Ecto-sp9_F_contig1036:9295..9436Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1036 9296..9436 +
1622928240.0456593-CDS-Ecto-sp9_F_contig1036:10001..101491622928240.0456593-CDS-Ecto-sp9_F_contig1036:10001..10149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1036 10002..10149 +
1692277806.557415-CDS-Ecto-sp9_F_contig1036:10001..101491692277806.557415-CDS-Ecto-sp9_F_contig1036:10001..10149Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1036 10002..10149 +
1622928240.0628-CDS-Ecto-sp9_F_contig1036:10412..107591622928240.0628-CDS-Ecto-sp9_F_contig1036:10412..10759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1036 10413..10759 +
1692277806.568301-CDS-Ecto-sp9_F_contig1036:10412..107591692277806.568301-CDS-Ecto-sp9_F_contig1036:10412..10759Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1036 10413..10759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1036.354.1

>prot_Ecto-sp9_F_contig1036.354.1 ID=prot_Ecto-sp9_F_contig1036.354.1|Name=mRNA_Ecto-sp9_F_contig1036.354.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=212bp
MSTDASASAPVVKDAAPVNAAPALAAGTPAATGANSVASTANQILFKNEL
YTSMKQKTMDQELMARFNREAQEEEKRKFEKARANVARLENKRKASCVGD
MVGPSGCDPSECSSASVAVDLGPQDTVRDVKKRLIAEAGWRDELPSDFGL
FNDVSEEPLMDGQSIDAALAPSKPSSAKKAVSRRGGSRATAAASIRLPRP
YVGVLWAARLG*
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mRNA from alignment at Ecto-sp9_F_contig1036:9296..10759+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1036.354.1 ID=mRNA_Ecto-sp9_F_contig1036.354.1|Name=mRNA_Ecto-sp9_F_contig1036.354.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1464bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1036:9296..10759+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGACAGATGCAAGCGCCTCGGCTCCGGTGGTCAAAGATGCCGCCCC
GGTTAATGCCGCACCTGCGTTGGCGGCCGGTACACCGGCCGCGACCGGCG
CTAACAGCGTCGCTAGCACGGCGAACCAGATCCTATTCAAGGTGAGATCC
ACTTCGTTTTCGGCCTGACCGCCACTCTGCTTTGCCTACAGTATACATCT
CCATCCTTGTCGCATGCCTGGAGATGCGCGCGTGTGGCGCATCGTGAGCG
ACAGGTTCACATACTTGGTTCTACGTTGGTCGAGCTGTGAATGATTGATG
GCGGCATAGCGGCATGCTGAGAGCAGGTTTCTGGAATCGACAGTACATGC
CAATGATGATGCTGCTGTGCATATTTTCATAACACTACATGCTGAAACTC
GTAACAAGCTCGACTTAGCGTACAGGCTTGCAAGTATGTGCAGAACAGGC
ATTACAACTCTCCACGTGGTTCGTGTTTTTCTTCGTTTCTCCGGGCATTT
GTTGAATACCGGTAATTTCACTCGAGCTCGGGTACAGGAATCGAATTCAA
CACTCACTCGCGAGTATGACAAAAAAAAGAAAGTCAACTGAGTTCTTTCC
CACCGAGCGATCGTAACCATTGACGTACAAAGAACTGTACTGGTTCAACC
AACGGTGTTTACATCCCTTCCGCGATCGGTGTCGACCGTGGCCGATGTCC
TTGCAGAATGAGCTCTACACGAGCATGAAGCAAAAAACAATGGACCAAGA
GCTGATGGCAAGGTTCAACAGAGAGGCTCAAGAAGAGGAGAAGCGAAAGT
TTGAGAAAGCGAGGGCAAATGTGGCTAGGCTGGAAAACAAGAGAAAGGCA
AGCTGTCGAAGGAGAACACTGCGGAAGTATAGCCAGAGGACGTAGATCCC
TGATTCAGAATCGCCGGGATGACACACGGCGTACATCCTAATCTAGGTAT
GCGGAGCCTTCCAGCCAATGTGTGCTTATGTCCGCCCTCCCAGCGTACCT
ATCTTGTTCAGGTTCCTTAGCCGCCGAACGGTTTTCCAACATCAGAATAT
CGTAAGACGCGTTCTGATAGGCGATGGTTTTCCAAAACCATCAACATTGT
GCAACAGGTCCTGATAGGCGTCGGCGACATGGTCGGTCCATCGGGGTGCG
ACCCCAGCGAATGCTCCTCCGCCTCCGTCGCGGTGGATCTGGGGCCTCAA
GACACCGTCCGGGACGTCAAGAAAAGGCTCATTGCCGAGGCCGGCTGGAG
GGACGAGCTGCCCTCCGACTTCGGCCTCTTCAACGACGTGTCGGAGGAAC
CTTTGATGGATGGGCAGTCGATAGATGCGGCGTTGGCACCAAGCAAACCG
TCGTCGGCCAAAAAAGCGGTGTCAAGGCGAGGCGGTAGTAGAGCTACTGC
AGCTGCATCGATTCGTCTTCCTCGTCCGTATGTAGGTGTGTTGTGGGCAG
CAAGATTGGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1036:9296..10759+

>mRNA_Ecto-sp9_F_contig1036.354.1 ID=mRNA_Ecto-sp9_F_contig1036.354.1|Name=mRNA_Ecto-sp9_F_contig1036.354.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1036:9296..10759+ (Ectocarpus species9 EcSCA_722f female)
ATGTCGACAGATGCAAGCGCCTCGGCTCCGGTGGTCAAAGATGCCGCCCC
GGTTAATGCCGCACCTGCGTTGGCGGCCGGTACACCGGCCGCGACCGGCG
CTAACAGCGTCGCTAGCACGGCGAACCAGATCCTATTCAAGATGTCGACA
GATGCAAGCGCCTCGGCTCCGGTGGTCAAAGATGCCGCCCCGGTTAATGC
CGCACCTGCGTTGGCGGCCGGTACACCGGCCGCGACCGGCGCTAACAGCG
TCGCTAGCACGGCGAACCAGATCCTATTCAAGAATGAGCTCTACACGAGC
ATGAAGCAAAAAACAATGGACCAAGAGCTGATGGCAAGGTTCAACAGAGA
GGCTCAAGAAGAGGAGAAGCGAAAGTTTGAGAAAGCGAGGGCAAATGTGG
CTAGGCTGGAAAACAAGAGAAAGGCAAGCTAATGAGCTCTACACGAGCAT
GAAGCAAAAAACAATGGACCAAGAGCTGATGGCAAGGTTCAACAGAGAGG
CTCAAGAAGAGGAGAAGCGAAAGTTTGAGAAAGCGAGGGCAAATGTGGCT
AGGCTGGAAAACAAGAGAAAGGCAAGCTGCGTCGGCGACATGGTCGGTCC
ATCGGGGTGCGACCCCAGCGAATGCTCCTCCGCCTCCGTCGCGGTGGATC
TGGGGCCTCAAGACACCGTCCGGGACGTCAAGAAAAGGCTCATTGCCGAG
GCCGGCTGGAGGGACGAGCTGCCCTCCGACTTCGGCCTCTTCAACGACGT
GTCGGAGGAACCTTTGATGGATGGGCAGTCGATAGATGCGGCGTTGGCAC
CAAGCAAACCGTCGTCGGCCAAAAAAGCGGTGTCAAGGCGAGGCGGTAGT
AGAGCTACTGCAGCTGCATCGATTCGTCTTCCTCGTCCGTATGTAGGTGT
GTTGTGGGCAGCAAGATTGGGTTGAGCGTCGGCGACATGGTCGGTCCATC
GGGGTGCGACCCCAGCGAATGCTCCTCCGCCTCCGTCGCGGTGGATCTGG
GGCCTCAAGACACCGTCCGGGACGTCAAGAAAAGGCTCATTGCCGAGGCC
GGCTGGAGGGACGAGCTGCCCTCCGACTTCGGCCTCTTCAACGACGTGTC
GGAGGAACCTTTGATGGATGGGCAGTCGATAGATGCGGCGTTGGCACCAA
GCAAACCGTCGTCGGCCAAAAAAGCGGTGTCAAGGCGAGGCGGTAGTAGA
GCTACTGCAGCTGCATCGATTCGTCTTCCTCGTCCGTATGTAGGTGTGTT
GTGGGCAGCAAGATTGGGTTGA
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