mRNA_Ecto-sp9_F_contig1027.284.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXU2_9PHAE) HSP 1 Score: 355 bits (912), Expect = 5.820e-114 Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 1
Query: 88 MSQGTIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY 636
MSQGT+KACLSGDTV+LIGRAGTHGPPPEMQLSLASL+APKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQG SSKSSELEELVELGK AEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY
Sbjct: 1 MSQGTVKACLSGDTVVLIGRAGTHGPPPEMQLSLASLAAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGASSKSSELEELVELGKNAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY 183
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Staphylococcal (nuclease domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8N1_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.990e-38 Identity = 79/184 (42.93%), Postives = 122/184 (66.30%), Query Frame = 1
Query: 100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGES---LAVAVAAAGWARVKDQ--GTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY 636
T+K LSGDT++L+G+ +GPPPE++L+L+SL AP+L + DE FAW +REFLR+ C+GK VTF+VE+ + R FG V+L ++ L V VA AGWARVK + G++ +S++ +E+V+ + AE LGIF D A + R+VK+ + +L KG P +A +E++RDG+++
Sbjct: 7 TVKEVLSGDTLVLVGQP-KNGPPPELRLTLSSLQAPRLAQKDKGEDEPFAWQAREFLRRACVGKLVTFQVEYSVASINRQFGAVRLQNDTKDNLCVVVARAGWARVKHEAPGSNERSADYDEMVQASEAAEKAGLGIFNTDPAAVQEAVRDVKFEPSNPEVLLREVKGKPQRAIVEYVRDGAAF 189
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CME8_PYTOL) HSP 1 Score: 149 bits (377), Expect = 4.940e-38 Identity = 84/188 (44.68%), Postives = 119/188 (63.30%), Query Frame = 1
Query: 94 QGTIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDG------ESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
+ T+KA +SGDT++L+G A T+GPPPE+ L+LASL AP+L R P E +AW SREFLRK CIGKQV FKVE++ A R+FG V L E+ V VA GWA+VK +Q S + E+++++ + A A K G++ D ++ + VKW+ D +LA HKG V A +E +++GSS
Sbjct: 5 RATVKAVISGDTLVLMG-AATNGPPPELVLTLASLQAPRLARGPDQPSEPYAWASREFLRKLCIGKQVRFKVEYRVNAINRDFGSVWLPANARGVEENACVVVAREGWAKVKTVEQSRDGASPDHEKMLKVEQVAIAEKKGMYND---TEDVAHQSVKWSGADAELLLAEHKGKLVPALVESVQNGSS 188
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Nuclease (n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC11_9STRA) HSP 1 Score: 147 bits (371), Expect = 3.120e-37 Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 1
Query: 100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
T+KA LSGDTV+LIG A T+G PPE+ L+LASL APKL R DE +A+ SRE+LR IGK V FKVE++ A R+FG + L+GE++ V VA GWA+VK +Q S +LEE++ + A+A K GI+ +D K + V WT G +L KG + A IE +RDG++
Sbjct: 7 TVKAVLSGDTVVLIGNA-TNGAPPELMLTLASLQAPKLARTAEQHDEAYAFASREYLRNLLIGKVVRFKVEYKVAAINRDFGSIYLNGENVCVLVAKEGWAKVKTLEQSRDGCSPDLEEMLRHEQNAQAEKKGIYAEDGTK---AALHVSWTGATGEELLGRFKGQQIPAIIEMVRDGAA 182
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: TNase-like (domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9C6R1_GOSGO) HSP 1 Score: 138 bits (347), Expect = 3.420e-37 Identity = 78/189 (41.27%), Postives = 120/189 (63.49%), Query Frame = 1
Query: 94 QGTIKACLSGDTVLLIGRAGTH-GPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSKSSE--LEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWT------DVDGVAILAAHKGVPVKATIEHLRDGSS 633
+G +KA SGD++++ A GPPPE ++LASL AP+L R GI DE FAW+SREFLRK CIGK+VTF+VE+ + GR FG V L +++A+ V + GWA+V++QG + L EL+ L + A+ +G ++ EA R++ + ++D + +LAA+KG P++ +E +RDGS+
Sbjct: 13 KGRVKAVPSGDSLVVTAMASNRPGPPPEKTITLASLIAPRLARRGGI-DEPFAWESREFLRKLCIGKEVTFRVEYAVPSIGREFGSVYLGDKNVAILVVSQGWAKVREQGQQKGEASPILSELLRLEEQAKQQGVGRWSKVPGAAEASIRDLPPSAIGDPSNLDAMGLLAANKGKPMEGIVEQVRDGST 200
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNZ3_9STRA) HSP 1 Score: 146 bits (369), Expect = 5.820e-37 Identity = 79/180 (43.89%), Postives = 116/180 (64.44%), Query Frame = 1
Query: 100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
T+KA +SGDTV+L+G A ++GPPPE+ L+L+SL APKL R DE +A+ SREFLRK IGK V FKV+++ R+FG V L+GE++ +AVA G+A+VK +Q S + +EL+ L + A++ K GI++DDS + V W + +L KG + A +E +RDG+S
Sbjct: 7 TVKAVISGDTVVLVGAASSNGPPPEIMLTLSSLQAPKLARTAEQTDEPYAFASREFLRKLLIGKPVRFKVDYRVSVINRDFGSVYLNGENVGLAVAREGFAKVKSIEQSRDGASPDHDELLRLEQVAQSEKKGIYSDDSV---TAALRVNWNGLSSDELLGRFKGQQIPAIVEVVRDGAS 183
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK22_9STRA) HSP 1 Score: 146 bits (369), Expect = 6.100e-37 Identity = 79/163 (48.47%), Postives = 106/163 (65.03%), Query Frame = 1
Query: 145 RAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
+ T GPPPE+QLSL+ L+APK+GR G +E +AW+SREFLR+ IGKQV FKV+++ G R FG V +D ESL VA GWA+V + S ++E EEL LG AEA + G++ R+VKW+ VD A+L AH+ P++ IEH+RDGSS
Sbjct: 99 KRSTGGPPPELQLSLSGLAAPKIGRGTGTTEEPWAWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMDNESLNAVVAREGWAKVNAREGDS-ATEAEELKRLGAAAEAARKGMYAGPGR-----GRDVKWSGVDTGALLQAHRCAPLRVVIEHVRDGSS 253
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWT5_9STRA) HSP 1 Score: 146 bits (368), Expect = 7.850e-37 Identity = 79/180 (43.89%), Postives = 117/180 (65.00%), Query Frame = 1
Query: 100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
T+KA +SGDTV+L+G A +GPPPE+ L+LASL APKL R DE FA+ SREFLR IGKQV FKVE++ + R+FG + + E++ V VA G+A+VK +Q S ++EE++ L + A++ K GI+++D K ++ V W+ + +L +KG + A IE +RDG+S
Sbjct: 7 TVKAVISGDTVILMGNA-VNGPPPELMLTLASLQAPKLARTAEQTDEPFAFASREFLRNLLIGKQVRFKVEYRVASINRDFGSIYFNNENVCVTVAREGFAKVKTLEQSRDGASPDIEEMLRLEQVAQSEKKGIYSEDPTK---ANQRVNWSGLSSTELLGRYKGQLIPAIIEMVRDGAS 182
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Aste57867_15990 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4Y9_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.990e-36 Identity = 81/180 (45.00%), Postives = 116/180 (64.44%), Query Frame = 1
Query: 100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
T+KA +SGDTV+L+G A T+GPPPE+ L+LASL APKL R DE +A+ SREFLR IGKQV FKVE++ R+FG + L+GE++ V VA G+A+VK +Q S + EE++ L + A++ K GI+++D+ K + V W + +L KG V A +E +RDG+S
Sbjct: 7 TVKAVISGDTVVLVGSA-TNGPPPELMLTLASLQAPKLARTAEQTDEPYAFASREFLRNLLIGKQVRFKVEYRVSVINRDFGSIYLNGENVCVTVAREGFAKVKSVEQSRDGVSPDHEEMLRLEQVAQSEKKGIYSEDATK---AALHVNWHGLSSDELLGRFKGQQVPAIVEMVRDGAS 182
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Ribonuclease (n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W327_MARPO) HSP 1 Score: 143 bits (361), Expect = 7.170e-36 Identity = 83/189 (43.92%), Postives = 118/189 (62.43%), Query Frame = 1
Query: 94 QGTIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSK---SSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDV------DGVAILAAHKGVPVKATIEHLRDGSS 633
+GT+KA SGD++L++G GPPPE ++LASL APKL R G DE +AWDSRE+LRKKCIGK+VTFKV++ + R FG V LDG+++A V A GWA+V+ QG + ++ + EL + A +LGI+ EA R++ + V D + L A+KG P+ A +E +RDGS+
Sbjct: 7 KGTVKAVPSGDSLLIMGNV-KGGPPPEKTITLASLIAPKLARRDG-KDESWAWDSREYLRKKCIGKEVTFKVDYVVSSINREFGTVLLDGQNVAYDVVAQGWAKVRPQGGQANEVSATYITELEQRETKAREEELGIWNKTPGAAEAAVRDLPPSAVGDGGNFDAMGFLEANKGKPLPAIVEAVRDGSA 193 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1027.284.1 >prot_Ecto-sp9_F_contig1027.284.1 ID=prot_Ecto-sp9_F_contig1027.284.1|Name=mRNA_Ecto-sp9_F_contig1027.284.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=212bp LAEKLCLRRSHRALKGRLQLFPRPRFAAIMSQGTIKACLSGDTVLLIGRAback to top mRNA from alignment at Ecto-sp9_F_contig1027:24096..27391+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1027.284.1 ID=mRNA_Ecto-sp9_F_contig1027.284.1|Name=mRNA_Ecto-sp9_F_contig1027.284.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3296bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:24096..27391+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1027:24096..27391+ >mRNA_Ecto-sp9_F_contig1027.284.1 ID=mRNA_Ecto-sp9_F_contig1027.284.1|Name=mRNA_Ecto-sp9_F_contig1027.284.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:24096..27391+ (Ectocarpus species9 EcSCA_722f female)back to top |