mRNA_Ecto-sp9_F_contig1027.284.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1027.284.1
Unique NamemRNA_Ecto-sp9_F_contig1027.284.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXU2_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 5.820e-114
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 1
Query:   88 MSQGTIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY 636
            MSQGT+KACLSGDTV+LIGRAGTHGPPPEMQLSLASL+APKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQG SSKSSELEELVELGK AEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY
Sbjct:    1 MSQGTVKACLSGDTVVLIGRAGTHGPPPEMQLSLASLAAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGASSKSSELEELVELGKNAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY 183          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Staphylococcal (nuclease domain-containing protein 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G8N1_9STRA)

HSP 1 Score: 150 bits (380), Expect = 1.990e-38
Identity = 79/184 (42.93%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGES---LAVAVAAAGWARVKDQ--GTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSSY 636
            T+K  LSGDT++L+G+   +GPPPE++L+L+SL AP+L +     DE FAW +REFLR+ C+GK VTF+VE+   +  R FG V+L  ++   L V VA AGWARVK +  G++ +S++ +E+V+  + AE   LGIF  D A  +   R+VK+   +   +L   KG P +A +E++RDG+++
Sbjct:    7 TVKEVLSGDTLVLVGQP-KNGPPPELRLTLSSLQAPRLAQKDKGEDEPFAWQAREFLRRACVGKLVTFQVEYSVASINRQFGAVRLQNDTKDNLCVVVARAGWARVKHEAPGSNERSADYDEMVQASEAAEKAGLGIFNTDPAAVQEAVRDVKFEPSNPEVLLREVKGKPQRAIVEYVRDGAAF 189          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CME8_PYTOL)

HSP 1 Score: 149 bits (377), Expect = 4.940e-38
Identity = 84/188 (44.68%), Postives = 119/188 (63.30%), Query Frame = 1
Query:   94 QGTIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDG------ESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
            + T+KA +SGDT++L+G A T+GPPPE+ L+LASL AP+L R P    E +AW SREFLRK CIGKQV FKVE++  A  R+FG V L        E+  V VA  GWA+VK  +Q     S + E+++++ + A A K G++ D    ++   + VKW+  D   +LA HKG  V A +E +++GSS
Sbjct:    5 RATVKAVISGDTLVLMG-AATNGPPPELVLTLASLQAPRLARGPDQPSEPYAWASREFLRKLCIGKQVRFKVEYRVNAINRDFGSVWLPANARGVEENACVVVAREGWAKVKTVEQSRDGASPDHEKMLKVEQVAIAEKKGMYND---TEDVAHQSVKWSGADAELLLAEHKGKLVPALVESVQNGSS 188          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Nuclease (n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YC11_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.120e-37
Identity = 84/180 (46.67%), Postives = 114/180 (63.33%), Query Frame = 1
Query:  100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
            T+KA LSGDTV+LIG A T+G PPE+ L+LASL APKL R     DE +A+ SRE+LR   IGK V FKVE++  A  R+FG + L+GE++ V VA  GWA+VK  +Q     S +LEE++   + A+A K GI+ +D  K    +  V WT   G  +L   KG  + A IE +RDG++
Sbjct:    7 TVKAVLSGDTVVLIGNA-TNGAPPELMLTLASLQAPKLARTAEQHDEAYAFASREYLRNLLIGKVVRFKVEYKVAAINRDFGSIYLNGENVCVLVAKEGWAKVKTLEQSRDGCSPDLEEMLRHEQNAQAEKKGIYAEDGTK---AALHVSWTGATGEELLGRFKGQQIPAIIEMVRDGAA 182          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: TNase-like (domain-containing protein n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J9C6R1_GOSGO)

HSP 1 Score: 138 bits (347), Expect = 3.420e-37
Identity = 78/189 (41.27%), Postives = 120/189 (63.49%), Query Frame = 1
Query:   94 QGTIKACLSGDTVLLIGRAGTH-GPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSKSSE--LEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWT------DVDGVAILAAHKGVPVKATIEHLRDGSS 633
            +G +KA  SGD++++   A    GPPPE  ++LASL AP+L R  GI DE FAW+SREFLRK CIGK+VTF+VE+   + GR FG V L  +++A+ V + GWA+V++QG     +   L EL+ L + A+   +G ++      EA  R++  +      ++D + +LAA+KG P++  +E +RDGS+
Sbjct:   13 KGRVKAVPSGDSLVVTAMASNRPGPPPEKTITLASLIAPRLARRGGI-DEPFAWESREFLRKLCIGKEVTFRVEYAVPSIGREFGSVYLGDKNVAILVVSQGWAKVREQGQQKGEASPILSELLRLEEQAKQQGVGRWSKVPGAAEASIRDLPPSAIGDPSNLDAMGLLAANKGKPMEGIVEQVRDGST 200          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FNZ3_9STRA)

HSP 1 Score: 146 bits (369), Expect = 5.820e-37
Identity = 79/180 (43.89%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
            T+KA +SGDTV+L+G A ++GPPPE+ L+L+SL APKL R     DE +A+ SREFLRK  IGK V FKV+++     R+FG V L+GE++ +AVA  G+A+VK  +Q     S + +EL+ L + A++ K GI++DDS      +  V W  +    +L   KG  + A +E +RDG+S
Sbjct:    7 TVKAVISGDTVVLVGAASSNGPPPEIMLTLSSLQAPKLARTAEQTDEPYAFASREFLRKLLIGKPVRFKVDYRVSVINRDFGSVYLNGENVGLAVAREGFAKVKSIEQSRDGASPDHDELLRLEQVAQSEKKGIYSDDSV---TAALRVNWNGLSSDELLGRFKGQQIPAIVEVVRDGAS 183          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK22_9STRA)

HSP 1 Score: 146 bits (369), Expect = 6.100e-37
Identity = 79/163 (48.47%), Postives = 106/163 (65.03%), Query Frame = 1
Query:  145 RAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
            +  T GPPPE+QLSL+ L+APK+GR  G  +E +AW+SREFLR+  IGKQV FKV+++ G   R FG V +D ESL   VA  GWA+V  +   S ++E EEL  LG  AEA + G++           R+VKW+ VD  A+L AH+  P++  IEH+RDGSS
Sbjct:   99 KRSTGGPPPELQLSLSGLAAPKIGRGTGTTEEPWAWESREFLRQLTIGKQVAFKVDYKGGM--RTFGTVTMDNESLNAVVAREGWAKVNAREGDS-ATEAEELKRLGAAAEAARKGMYAGPGR-----GRDVKWSGVDTGALLQAHRCAPLRVVIEHVRDGSS 253          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WWT5_9STRA)

HSP 1 Score: 146 bits (368), Expect = 7.850e-37
Identity = 79/180 (43.89%), Postives = 117/180 (65.00%), Query Frame = 1
Query:  100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
            T+KA +SGDTV+L+G A  +GPPPE+ L+LASL APKL R     DE FA+ SREFLR   IGKQV FKVE++  +  R+FG +  + E++ V VA  G+A+VK  +Q     S ++EE++ L + A++ K GI+++D  K    ++ V W+ +    +L  +KG  + A IE +RDG+S
Sbjct:    7 TVKAVISGDTVILMGNA-VNGPPPELMLTLASLQAPKLARTAEQTDEPFAFASREFLRNLLIGKQVRFKVEYRVASINRDFGSIYFNNENVCVTVAREGFAKVKTLEQSRDGASPDIEEMLRLEQVAQSEKKGIYSEDPTK---ANQRVNWSGLSSTELLGRYKGQLIPAIIEMVRDGAS 182          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Aste57867_15990 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4Y9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 1.990e-36
Identity = 81/180 (45.00%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  100 TIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVK--DQGTSSKSSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVKATIEHLRDGSS 633
            T+KA +SGDTV+L+G A T+GPPPE+ L+LASL APKL R     DE +A+ SREFLR   IGKQV FKVE++     R+FG + L+GE++ V VA  G+A+VK  +Q     S + EE++ L + A++ K GI+++D+ K    +  V W  +    +L   KG  V A +E +RDG+S
Sbjct:    7 TVKAVISGDTVVLVGSA-TNGPPPELMLTLASLQAPKLARTAEQTDEPYAFASREFLRNLLIGKQVRFKVEYRVSVINRDFGSIYLNGENVCVTVAREGFAKVKSVEQSRDGVSPDHEEMLRLEQVAQSEKKGIYSEDATK---AALHVNWHGLSSDELLGRFKGQQVPAIVEMVRDGAS 182          
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Match: Ribonuclease (n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176W327_MARPO)

HSP 1 Score: 143 bits (361), Expect = 7.170e-36
Identity = 83/189 (43.92%), Postives = 118/189 (62.43%), Query Frame = 1
Query:   94 QGTIKACLSGDTVLLIGRAGTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVTFKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSK---SSELEELVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDV------DGVAILAAHKGVPVKATIEHLRDGSS 633
            +GT+KA  SGD++L++G     GPPPE  ++LASL APKL R  G  DE +AWDSRE+LRKKCIGK+VTFKV++   +  R FG V LDG+++A  V A GWA+V+ QG  +    ++ + EL +    A   +LGI+       EA  R++  + V      D +  L A+KG P+ A +E +RDGS+
Sbjct:    7 KGTVKAVPSGDSLLIMGNV-KGGPPPEKTITLASLIAPKLARRDG-KDESWAWDSREYLRKKCIGKEVTFKVDYVVSSINREFGTVLLDGQNVAYDVVAQGWAKVRPQGGQANEVSATYITELEQRETKAREEELGIWNKTPGAAEAAVRDLPPSAVGDGGNFDAMGFLEANKGKPLPAIVEAVRDGSA 193          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1027.284.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized5.820e-11497.27protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
Staphylococcal1.990e-3842.93nuclease domain-containing protein 1 n=1 Tax=Honda... [more]
Uncharacterized4.940e-3844.68protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Nuclease3.120e-3746.67n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9... [more]
TNase-like3.420e-3741.27domain-containing protein n=2 Tax=Gossypium TaxID=... [more]
Uncharacterized5.820e-3743.89protein n=4 Tax=Aphanomyces astaci TaxID=112090 Re... [more]
Uncharacterized6.100e-3748.47protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
Uncharacterized7.850e-3743.89protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Aste57867_159901.990e-3645.00protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Ribonuclease7.170e-3643.92n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1027contigEcto-sp9_F_contig1027:24096..27391 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.1
Seed ortholog evalue1.8e-97
Seed eggNOG ortholog2880.D8LGL1
KEGG koko:K15979
KEGG Pathwayko05169,ko05203,map05169,map05203
GOsGO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005829,GO:0005886,GO:0005911,GO:0006082,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009266,GO:0009408,GO:0009506,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009685,GO:0009686,GO:0009791,GO:0009845,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010035,GO:0010038,GO:0010371,GO:0010372,GO:0010467,GO:0010468,GO:0010494,GO:0010565,GO:0010605,GO:0010629,GO:0010817,GO:0012505,GO:0016020,GO:0016053,GO:0016070,GO:0016071,GO:0016101,GO:0016102,GO:0016114,GO:0016787,GO:0016788,GO:0019216,GO:0019222,GO:0019439,GO:0019747,GO:0019752,GO:0030054,GO:0030312,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031967,GO:0031975,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034605,GO:0034641,GO:0034655,GO:0035770,GO:0036464,GO:0042221,GO:0042445,GO:0042446,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043455,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045828,GO:0045834,GO:0046394,GO:0046483,GO:0046686,GO:0046700,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055044,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090351,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.gamete generation
EggNOG OGsCOG1525@1,KOG2039@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categorymitochondrion
Exons5
Model size639
Cds size636
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1027.284.1prot_Ecto-sp9_F_contig1027.284.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1027 24096..27389 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928224.283101-CDS-Ecto-sp9_F_contig1027:24095..242371622928224.283101-CDS-Ecto-sp9_F_contig1027:24095..24237Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 24096..24237 +
1692277802.0267267-CDS-Ecto-sp9_F_contig1027:24095..242371692277802.0267267-CDS-Ecto-sp9_F_contig1027:24095..24237Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 24096..24237 +
1622928224.3032184-CDS-Ecto-sp9_F_contig1027:24572..247241622928224.3032184-CDS-Ecto-sp9_F_contig1027:24572..24724Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 24573..24724 +
1692277802.0390165-CDS-Ecto-sp9_F_contig1027:24572..247241692277802.0390165-CDS-Ecto-sp9_F_contig1027:24572..24724Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 24573..24724 +
1622928224.3255112-CDS-Ecto-sp9_F_contig1027:25818..259771622928224.3255112-CDS-Ecto-sp9_F_contig1027:25818..25977Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 25819..25977 +
1692277802.0479088-CDS-Ecto-sp9_F_contig1027:25818..259771692277802.0479088-CDS-Ecto-sp9_F_contig1027:25818..25977Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 25819..25977 +
1622928224.347581-CDS-Ecto-sp9_F_contig1027:26611..266861622928224.347581-CDS-Ecto-sp9_F_contig1027:26611..26686Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 26612..26686 +
1692277802.058334-CDS-Ecto-sp9_F_contig1027:26611..266861692277802.058334-CDS-Ecto-sp9_F_contig1027:26611..26686Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 26612..26686 +
1622928224.3658595-CDS-Ecto-sp9_F_contig1027:27281..273891622928224.3658595-CDS-Ecto-sp9_F_contig1027:27281..27389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 27282..27389 +
1692277802.065544-CDS-Ecto-sp9_F_contig1027:27281..273891692277802.065544-CDS-Ecto-sp9_F_contig1027:27281..27389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1027 27282..27389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1027.284.1

>prot_Ecto-sp9_F_contig1027.284.1 ID=prot_Ecto-sp9_F_contig1027.284.1|Name=mRNA_Ecto-sp9_F_contig1027.284.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=212bp
LAEKLCLRRSHRALKGRLQLFPRPRFAAIMSQGTIKACLSGDTVLLIGRA
GTHGPPPEMQLSLASLSAPKLGRAPGIADEQFAWDSREFLRKKCIGKQVT
FKVEFQAGASGRNFGWVKLDGESLAVAVAAAGWARVKDQGTSSKSSELEE
LVELGKTAEANKLGIFTDDSAKQEAGSREVKWTDVDGVAILAAHKGVPVK
ATIEHLRDGSSY
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mRNA from alignment at Ecto-sp9_F_contig1027:24096..27391+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1027.284.1 ID=mRNA_Ecto-sp9_F_contig1027.284.1|Name=mRNA_Ecto-sp9_F_contig1027.284.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3296bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:24096..27391+ (Ectocarpus species9 EcSCA_722f female)
CTCGCAGAAAAGCTTTGCTTGCGTCGAAGCCATCGCGCCTTGAAGGGACG TCTGCAGCTCTTTCCACGACCCCGCTTCGCTGCTATTATGTCTCAGGGAA CTATCAAGGCGTGCCTGTCGGGAGACACGGTTCTCCTCATCGGTGAGCAT CTCATCTCGCCCGCCGCTTTGTAGAACACACACCCATCTTTTTTTACTAC CAAACAGCCAAGCAGCATTGAACAACACACCAAGCACGGCCCGTGAGATG AGAGAGCAGTGGCGGGGCGCTCTTCTTGCAGGTCGAGAGCATGCATCCAC AATGAGTAGAAAAAAGGGGGGTTGTGCGTTCGGCAGTTCATGCCCGCGTG CCCTATAGCTCTCCGATGCCCGTGACCGCTCTTCTCGCGATCTCTCTCAC ATGGTGTCTATTTTTGTTCCTGCTTCTCCCTCTCGCTCTCCTCTCGCTCT CTCTCCGCCCCAACCCCACGTTGGCAGGTCGAGCCGGCACCCATGGACCT CCCCCCGAGATGCAGCTCTCGCTGGCCTCCCTCTCGGCCCCGAAGCTAGG CCGCGCCCCAGGCATCGCCGATGAACAGTTCGCCTGGGACAGCCGCGAGT TCTTGCGCAAGAAATGCATCGGCAAGCAGGTGTGGGTTTTCTCGGTGCCG CCGGTGCGGATGTATGCAGCTGCTGTACAAGTATACAGCCAAGCCTGCTG TATCCTGCAGGCTGCTGCTAAGGCTGAGGCTGGCCCGTAGCGAAAGGAGA GGCTTATCCATTCTCGTCGTTAGGTCTGGGTAGTACGGCCGTTCCGTGTG CCACTCTAGGAAAAAAACTCAAATTGCAACACGAGCGGAGTCGGGACGGC GCGAATTATATGGTACAAGCACTAGTACCTGGGAGAGGGGAGGATTTCGC TACTTCACCACCAGACGGCGCTATTTCATTGGTCTGTCTTCGGAGTGAGA AGGGAGGAAGCAAGAGGGGGTCATGCTGATACGCGGATGGTTTGTTAGCC CGCTGTTGTTATCGTTGTTGTTCAGCGCTTTGCTGCAAGACGGACATGCT TGGTTCACGTGCTGAACGTACCCGTGTGCTGTAGACTATCCGGAGATACC AAACCTCAAAGAAACTTTGCTTTGTAGTAAATACCTTGGAAATTGTGCGA ACGGTTCGCCGATATGCACCCCCGCGAGCGAGGACCAAAAACAGCCCATC CGCGGCGCCAGTGATGTGCTACTAGCAGTGGCATCCGTTGTTTTCGTCTC CTTCAAACCTTTGTCTCTGTGGCCGTACACGGCATTTGTCCGTAGGACTT TTGTTGTAGGCCGCTTCTTCGTGCGGCCATTTTTCACCTCAACGTTAACA CTAAAATAGAAGACCGCGTGTTGTTGGACCGCCAAATGCATCCAAAGTTG AGAGACGACGAGGACGGGGCATTTGATCACACAGCGGTATCTCGGTACGC CACCGAAAGCCTGGTCGAACCTTTCGGGTGGGTTAGATACGGGAACAGGG CTTTCCATGCTGGCGTGCATGTGTCTAAGGCCACTGCTGTTCGTCTGCTG CCTACTAATGTACTGCTGTCACTGAGGGCCGTCTTGTTCGCGAGAAATTT ACGCAGATCGTAACCCCGAGGCAACTTCCCCAATGGCAGGCTTTATCCAA CATGTTTGCTGCAACGAAAAAACTTGCGAAGGGTAGATACCACTGATCCT TAACTACCTCTTGGGGGCCACAGGTGACCTTCAAGGTCGAGTTCCAGGCG GGAGCCAGCGGGCGCAACTTCGGCTGGGTCAAGCTCGACGGCGAGAGCCT GGCCGTGGCCGTGGCGGCGGCGGGGTGGGCCAGGGTTAAGGACCAGGGCA CTTCCAGCAAGAGCTCCGAGCTCGAAGAGCTGGTGAGCCACGCAAGGGGC GAGGGGGTTCAGCACCTGCTTCGCTCGCAGCTATGTTCAATAGTGGTCAT GTAGGAGCTGAAGTCCACGAGCTCGAAGAGCTGGTGAGCCGCAGCAAGCA GCTGTGTAGGAGCTGAAGTCCACGTTTACGTACACGGGAGTGTTGACAGC GAGGAGACATGGGACAGGAGGGATCGCGTTGACCCGGTGTGTTAAGCGTG GGCGGCGAACGATGCTCAGCATTCCTTGCCTTACGCCCGCGATTCCCGCG TCCTTTTTCTAGGGGTGGGTAGTAGACGTGGGCGTGCGTGCGGGAGACAT AAGTGTGTGTGTTATTGTATGTCGTCGAAATCGCTGTCCGACTGACCAAT GAAAATACGCCAGTCTCGATACGGCAAAAAAAAAAAAGGCGTGTGTTTTG GTGTGAGGAGGGTGAAAGACCCCGTATGGAACGTATGGCGAGAGTCGCAG AATTCAATATGCTCGCAAGAATCGGTTGCTCTTTCTCTTTCAAATCCATT TTTTTTCCTGATCGTCGTCCCCCCCGTCCCTCCCCTCGTCGCCCCCCCCC CCCGAACTACTTTGTCACGGAATGTGTCTTTTCGGATATACGACGTGCCG CCGCCTTTTGTCACAGGTGGAGTTAGGAAAAACTGCCGAAGCGAACAAGC TGGGCATCTTCACTGACGACAGTGCCAAGCAGGAGGCGGGGGTAAGAGCT TGGGAGTGTGTTGCGTGCTGTTGAAGGCGAAAGATGGGCTTTTGACATCG GCGAAGGCCGAGAGTAGGAAGAAGTAATAGACACCCCTACCCCCAAGCCG TGGGCGTTTTGTCTTGGTGTTCCTTGAGGAAGACGTGGGAGGCGGGGGGG CGGAGGTTGCAGGCGCCGGGACAGAAGATAGGCAGTGACGGATGATGCAG ACTGAGAACCGAGACACAAGAGATGCCGACGTCGTCTGCGCCGCACGTAC ATAGAACCTGCGGTGTTTTCAAGAGTCCCCCCTTCTGAAAGGACACGCGA TGGGCTAGAGTAGCGGTGGTGGTAGATAAGAGAAGCCGACGGGGTGCTGC GCTGGTTCTGGTCCGCAGAACAAGCTGCGACAAGCGTCTGTAGGAATACA GCGGCAACAGAGATCCGCGAGAAGTGGATGATGTAGGAAGAACCACCACA CAGCTCATGTGAGTGAGTGAGCGAGCGGTAACTCAACGAAATTCTCCACC CTGTTTTTGCCCCCCCCTCCCGCTTCGGAACAAACGACACACGCCTCCCG AAAAAATGGTTTTGAAAAAAAAAACTCGAAATAAAGAGCCGCGAGGTGAA GTGGACCGACGTGGACGGGGTGGCGATCCTGGCGGCGCACAAGGGGGTGC CCGTGAAGGCGACCATCGAGCACCTCAGGGATGGCTCCAGCTACAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1027:24096..27391+

>mRNA_Ecto-sp9_F_contig1027.284.1 ID=mRNA_Ecto-sp9_F_contig1027.284.1|Name=mRNA_Ecto-sp9_F_contig1027.284.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1027:24096..27391+ (Ectocarpus species9 EcSCA_722f female)
CTCGCAGAAAAGCTTTGCTTGCGTCGAAGCCATCGCGCCTTGAAGGGACG
TCTGCAGCTCTTTCCACGACCCCGCTTCGCTGCTATTATGTCTCAGGGAA
CTATCAAGGCGTGCCTGTCGGGAGACACGGTTCTCCTCATCGCTCGCAGA
AAAGCTTTGCTTGCGTCGAAGCCATCGCGCCTTGAAGGGACGTCTGCAGC
TCTTTCCACGACCCCGCTTCGCTGCTATTATGTCTCAGGGAACTATCAAG
GCGTGCCTGTCGGGAGACACGGTTCTCCTCATCGGTCGAGCCGGCACCCA
TGGACCTCCCCCCGAGATGCAGCTCTCGCTGGCCTCCCTCTCGGCCCCGA
AGCTAGGCCGCGCCCCAGGCATCGCCGATGAACAGTTCGCCTGGGACAGC
CGCGAGTTCTTGCGCAAGAAATGCATCGGCAAGCAGGTCGAGCCGGCACC
CATGGACCTCCCCCCGAGATGCAGCTCTCGCTGGCCTCCCTCTCGGCCCC
GAAGCTAGGCCGCGCCCCAGGCATCGCCGATGAACAGTTCGCCTGGGACA
GCCGCGAGTTCTTGCGCAAGAAATGCATCGGCAAGCAGGTGACCTTCAAG
GTCGAGTTCCAGGCGGGAGCCAGCGGGCGCAACTTCGGCTGGGTCAAGCT
CGACGGCGAGAGCCTGGCCGTGGCCGTGGCGGCGGCGGGGTGGGCCAGGG
TTAAGGACCAGGGCACTTCCAGCAAGAGCTCCGAGCTCGAAGAGCTGGTG
ACCTTCAAGGTCGAGTTCCAGGCGGGAGCCAGCGGGCGCAACTTCGGCTG
GGTCAAGCTCGACGGCGAGAGCCTGGCCGTGGCCGTGGCGGCGGCGGGGT
GGGCCAGGGTTAAGGACCAGGGCACTTCCAGCAAGAGCTCCGAGCTCGAA
GAGCTGGTGGAGTTAGGAAAAACTGCCGAAGCGAACAAGCTGGGCATCTT
CACTGACGACAGTGCCAAGCAGGAGGCGGGGGTGGAGTTAGGAAAAACTG
CCGAAGCGAACAAGCTGGGCATCTTCACTGACGACAGTGCCAAGCAGGAG
GCGGGGAGCCGCGAGGTGAAGTGGACCGACGTGGACGGGGTGGCGATCCT
GGCGGCGCACAAGGGGGTGCCCGTGAAGGCGACCATCGAGCACCTCAGGG
ATGGCTCCAGCTACAGCCGCGAGGTGAAGTGGACCGACGTGGACGGGGTG
GCGATCCTGGCGGCGCACAAGGGGGTGCCCGTGAAGGCGACCATCGAGCA
CCTCAGGGATGGCTCCAGCTAC
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