mRNA_Ecto-sp9_F_contig10232.258.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10232.258.1
Unique NamemRNA_Ecto-sp9_F_contig10232.258.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10232.258.1 vs.
Match: Methyl-accepting (transducer domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 9.640e-33
Identity = 75/103 (72.82%), Postives = 82/103 (79.61%), Query Frame = -1 
Query:    4 VSNAAAIARESLPDDASTTAKTPTPTAAGVSANLEAARADALARTNAYLRGLLDNLVVANGXXXXXXXFSTEHSNPAAKIPEQEEEAGGDYDGDAGADEEGHR 312
            VS  AAI +ESL +DASTTAK PT TAA VS NLEAARADALARTN +LRGLLD+LVVA+G       FS EHSNPAA IPEQE+EAGG YDGD GAD+ GHR
Sbjct: 1842 VSKTAAITQESLREDASTTAKAPTTTAARVSTNLEAARADALARTNTFLRGLLDSLVVADGGGDGGDGFSAEHSNPAATIPEQEQEAGGVYDGDGGADQGGHR 1944
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BLAST of mRNA_Ecto-sp9_F_contig10232.258.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.120e-21
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = -1 
Query:  130 VSNAAAIARESLPDDASTTAKTPTPTAAGVSANLEAARADALARTNAYLRGLLDNLVVANG 312
            VSNAAAIARESLPDD STTAKT T TAA VSANLEAARADALARTNAYLRGLLDNLVVANG
Sbjct: 3175 VSNAAAIARESLPDDTSTTAKTATTTAARVSANLEAARADALARTNAYLRGLLDNLVVANG 3235
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10232.258.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Methyl-accepting9.640e-3372.82transducer domain-containing protein n=1 Tax=Ectoc... [more]
Uncharacterized2.120e-2193.44protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10232contigEcto-sp9_F_contig10232:2173..2485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size313
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.943758-CDS-Ecto-sp9_F_contig10232:2172..24841622928219.943758-CDS-Ecto-sp9_F_contig10232:2172..2484Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 2173..2484 +
1692277800.3457537-CDS-Ecto-sp9_F_contig10232:2172..24841692277800.3457537-CDS-Ecto-sp9_F_contig10232:2172..2484Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 2173..2484 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10232.258.1prot_Ecto-sp9_F_contig10232.258.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10232 2173..2484 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10232.258.1

>prot_Ecto-sp9_F_contig10232.258.1 ID=prot_Ecto-sp9_F_contig10232.258.1|Name=mRNA_Ecto-sp9_F_contig10232.258.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=104bp
VTVTLLVRSRIAVVIPSCFLLLLRYFCGRVAVFGGESAATVAAAIGDDEV
VEETAQVRVRSGESVGPSRLQVRRHSSSGRRRRLRRCRRIVWQGFPRDGS
SVAD
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mRNA from alignment at Ecto-sp9_F_contig10232:2173..2485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10232.258.1 ID=mRNA_Ecto-sp9_F_contig10232.258.1|Name=mRNA_Ecto-sp9_F_contig10232.258.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=313bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:2173..2485+ (Ectocarpus species9 EcSCA_722f female)
GTGACGGTGACCCTCCTCGTCCGCTCCCGCATCGCCGTCGTAATCCCCTC
CTGCTTCCTCCTCTTGCTCCGGTATTTTTGCGGCAGGGTTGCTGTGTTCG
GTGGAGAATCCGCCGCCACCGTCGCCGCCGCCATTGGCGACGACGAGGTT
GTCGAGGAGACCGCGCAGGTACGCGTTCGTTCGGGCGAGAGCGTCGGCCC
TAGCCGCCTCCAGGTTCGCCGACACTCCAGCAGCGGTCGGCGTCGGCGTC
TTCGCCGTTGTAGACGCATCGTCTGGCAGGGATTCCCGCGCGATGGCAGC
AGCGTTGCTGACT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10232:2173..2485+

>mRNA_Ecto-sp9_F_contig10232.258.1 ID=mRNA_Ecto-sp9_F_contig10232.258.1|Name=mRNA_Ecto-sp9_F_contig10232.258.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:2173..2485+ (Ectocarpus species9 EcSCA_722f female)
GTGACGGTGACCCTCCTCGTCCGCTCCCGCATCGCCGTCGTAATCCCCTC
CTGCTTCCTCCTCTTGCTCCGGTATTTTTGCGGCAGGGTTGCTGTGTTCG
GTGGAGAATCCGCCGCCACCGTCGCCGCCGCCATTGGCGACGACGAGGTT
GTCGAGGAGACCGCGCAGGTACGCGTTCGTTCGGGCGAGAGCGTCGGCCC
TAGCCGCCTCCAGGTTCGCCGACACTCCAGCAGCGGTCGGCGTCGGCGTC
TTCGCCGTTGTAGACGCATCGTCTGGCAGGGATTCCCGCGCGATGGCAGC
AGCGTTGCTGACGTGACGGTGACCCTCCTCGTCCGCTCCCGCATCGCCGT
CGTAATCCCCTCCTGCTTCCTCCTCTTGCTCCGGTATTTTTGCGGCAGGG
TTGCTGTGTTCGGTGGAGAATCCGCCGCCACCGTCGCCGCCGCCATTGGC
GACGACGAGGTTGTCGAGGAGACCGCGCAGGTACGCGTTCGTTCGGGCGA
GAGCGTCGGCCCTAGCCGCCTCCAGGTTCGCCGACACTCCAGCAGCGGTC
GGCGTCGGCGTCTTCGCCGTTGTAGACGCATCGTCTGGCAGGGATTCCCG
CGCGATGGCAGCAGCGTTGCTGAC
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