mRNA_Ecto-sp9_F_contig10232.257.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10232.257.1
Unique NamemRNA_Ecto-sp9_F_contig10232.257.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10232.257.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q5_ECTSI)

HSP 1 Score: 196 bits (497), Expect = 7.590e-55
Identity = 124/159 (77.99%), Postives = 127/159 (79.87%), Query Frame = 1 
Query:   19 KVETLKASLAATEAERLELETLLNDASLGSEAASRDAEAQVDALKAELEASGREVAVASEERRQIEEALADGQEGLLALREALERTVDAARGLLERAEAVAADAEAGEVETLEAELRCLERRAPHSRRRVSSTXXXXXXXSASPPRLPLPAGRGLRSAV 495
            +VETLKASLAATEAERLELETLL DAS G+EAASRDA+AQ                VASEERRQIEEA ADGQEGLLALREAL RT DAARGLLERAEAV ADAEAGEVETLEAELRCLERRAPHSRRR  ST       SASPP LPLPAGRGLRSAV
Sbjct: 3378 EVETLKASLAATEAERLELETLLEDASHGAEAASRDAKAQXXXXXXXXXXXXXXXXVASEERRQIEEAFADGQEGLLALREALGRTGDAARGLLERAEAVTADAEAGEVETLEAELRCLERRAPHSRRRAPSTAAHHRRRSASPPGLPLPAGRGLRSAV 3536
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BLAST of mRNA_Ecto-sp9_F_contig10232.257.1 vs.
Match: Methyl-accepting (transducer domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK6_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.490e-10
Identity = 56/109 (51.38%), Postives = 60/109 (55.05%), Query Frame = 1 
Query:   19 KVETLKASLAATEAERLELETLLNDASLGSEAASRDAEAQVDALKAELEASGREVAVASEERRQIEEALADGQEGLLALREALERTVDAARGLLERAEAVAADAEAGEV 345
            +VE+LKASLAATEAERLELETLL DAS G+EAASRD EAQVDA                                              ARGLL+RAEAVAADAEAGEV
Sbjct: 2044 EVESLKASLAATEAERLELETLLKDASHGAEAASRDTEAQVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGLLKRAEAVAADAEAGEV 2152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10232.257.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.590e-5577.99protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Methyl-accepting5.490e-1051.38transducer domain-containing protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10232contigEcto-sp9_F_contig10232:317..1732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size495
Cds size495
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10232.257.1prot_Ecto-sp9_F_contig10232.257.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10232 317..1732 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.873209-CDS-Ecto-sp9_F_contig10232:316..4691622928219.873209-CDS-Ecto-sp9_F_contig10232:316..469Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 317..469 -
1692277800.3123462-CDS-Ecto-sp9_F_contig10232:316..4691692277800.3123462-CDS-Ecto-sp9_F_contig10232:316..469Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 317..469 -
1622928219.886906-CDS-Ecto-sp9_F_contig10232:1071..11971622928219.886906-CDS-Ecto-sp9_F_contig10232:1071..1197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 1072..1197 -
1692277800.3204913-CDS-Ecto-sp9_F_contig10232:1071..11971692277800.3204913-CDS-Ecto-sp9_F_contig10232:1071..1197Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 1072..1197 -
1622928219.8999653-CDS-Ecto-sp9_F_contig10232:1516..17321622928219.8999653-CDS-Ecto-sp9_F_contig10232:1516..1732Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 1517..1732 -
1692277800.3308487-CDS-Ecto-sp9_F_contig10232:1516..17321692277800.3308487-CDS-Ecto-sp9_F_contig10232:1516..1732Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10232 1517..1732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10232.257.1

>prot_Ecto-sp9_F_contig10232.257.1 ID=prot_Ecto-sp9_F_contig10232.257.1|Name=mRNA_Ecto-sp9_F_contig10232.257.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=165bp
MIPSQQKVETLKASLAATEAERLELETLLNDASLGSEAASRDAEAQVDAL
KAELEASGREVAVASEERRQIEEALADGQEGLLALREALERTVDAARGLL
ERAEAVAADAEAGEVETLEAELRCLERRAPHSRRRVSSTAAHHRRRSASP
PRLPLPAGRGLRSAV
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mRNA from alignment at Ecto-sp9_F_contig10232:317..1732-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10232.257.1 ID=mRNA_Ecto-sp9_F_contig10232.257.1|Name=mRNA_Ecto-sp9_F_contig10232.257.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1416bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:317..1732- (Ectocarpus species9 EcSCA_722f female)
ATGATTCCCTCTCAACAAAAGGTGGAGACCTTGAAGGCATCCCTTGCGGC
GACCGAAGCCGAACGCCTGGAGCTGGAAACTCTCTTGAACGATGCCTCAC
TCGGGTCTGAAGCAGCTTCTCGAGACGCGGAGGCACAGGTGGATGCGTTG
AAGGCAGAGCTGGAAGCTTCCGGGAGAGAGGTGGCTGTCGCCAGCGAGGA
GAGGCGCCAAATCGAGGTAAGGCATTGCTGTTCCACTGCTGCTGCTGCTG
CTGCTGGTGATGTTTTTTTTTTTGCTGCCGTTGTTGTCGTGGTTGATTTT
GTTGCTGTGTGGCCGTCCTTTGTTGAGCCTGCTGTTGCCGTGTGTGAGAG
GTGATTCTTCTCACCACCGTCGCGCTAGGTCCAACGTGCTTCGTTTTTCA
TTGCGGCTTCCTTTTCGCCGCATAGACCTTTCGCCATTCGTCGATACCAA
ACGGTTCAAGAACATCACCCATGACTGTCGGACCCACTCCCCTGGTGCCC
TCTACCACAACAACAACAACGACAAACTCATGCAGGAGGCGTTGGCCGAC
GGGCAGGAAGGGTTGCTGGCTCTACGAGAGGCCCTTGAGCGTACCGTTGA
CGCAGCAAGGGGTCTGCTAGAGAGAGCGGAGGCGGTCGCGGCGGACGCTG
AAGCCGGAGAGGTGAGGGGGGATTACGCCGCACCCATGAGTTACGAGCAA
GCGCTCTATGCCCATGTCAGCCTGGGTTATATTTTATGTCAAAAGGACGG
CACGGTGGAAGCATGGCCAGAGTGGTAGATCATGTCTCGTACCGAGTAGG
GCGGCTGTTTGTGTGTACTCGGCAATATACGAATCTCTGAGATCTCCGGG
GGGTACGCAGATAGATATACATGATGGATGTGATGGACTTGACGCGCTAG
GCTCTGCTTGCCTGCCCATGTCTCACTCTCTAAATATTCAAGGAACTTGA
GTAACTCCTTTGTGCAAAACGCTCGCGACAGTAGCCCGCGAGCATGATAA
CATAGTACACGCGCCGACACCCCAAACACAACAGGACGGCACAGTGGAAG
CATGGCCAGAGTGTGCCGCTAGCGAATGCCTCTTGCCTCTCGCTCTTCAC
GTACGCTGCACGCACGCACGGTTATCTATTGTGGCACACTCTTGGTGCAT
ACTCCCTTCCGCGATGCTCCATGGATCACCTTGCAAACGAAACCGTAGCT
AGCCGCCATCAGAGAGAAGAGAGCATCAAACGCCATCCCCCCGTGCCTAA
AAATGTTCTGCAGGTGGAAACCCTCGAGGCCGAGCTTCGATGCCTGGAAC
GCCGCGCTCCTCACAGCCGGAGAAGAGTATCATCGACAGCCGCACACCAC
CGCCGCCGCTCCGCTTCCCCCCCCCGCCTCCCGCTGCCTGCTGGACGGGG
ACTACGCTCCGCGGTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10232:317..1732-

>mRNA_Ecto-sp9_F_contig10232.257.1 ID=mRNA_Ecto-sp9_F_contig10232.257.1|Name=mRNA_Ecto-sp9_F_contig10232.257.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=990bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10232:317..1732- (Ectocarpus species9 EcSCA_722f female)
ATGATTCCCTCTCAACAAAAGGTGGAGACCTTGAAGGCATCCCTTGCGGC
GACCGAAGCCGAACGCCTGGAGCTGGAAACTCTCTTGAACGATGCCTCAC
TCGGGTCTGAAGCAGCTTCTCGAGACGCGGAGGCACAGGTGGATGCGTTG
AAGGCAGAGCTGGAAGCTTCCGGGAGAGAGGTGGCTGTCGCCAGCGAGGA
GAGGCGCCAAATCGAGATGATTCCCTCTCAACAAAAGGTGGAGACCTTGA
AGGCATCCCTTGCGGCGACCGAAGCCGAACGCCTGGAGCTGGAAACTCTC
TTGAACGATGCCTCACTCGGGTCTGAAGCAGCTTCTCGAGACGCGGAGGC
ACAGGTGGATGCGTTGAAGGCAGAGCTGGAAGCTTCCGGGAGAGAGGTGG
CTGTCGCCAGCGAGGAGAGGCGCCAAATCGAGGAGGCGTTGGCCGACGGG
CAGGAAGGGTTGCTGGCTCTACGAGAGGCCCTTGAGCGTACCGTTGACGC
AGCAAGGGGTCTGCTAGAGAGAGCGGAGGCGGTCGCGGCGGACGCTGAAG
CCGGAGAGGAGGCGTTGGCCGACGGGCAGGAAGGGTTGCTGGCTCTACGA
GAGGCCCTTGAGCGTACCGTTGACGCAGCAAGGGGTCTGCTAGAGAGAGC
GGAGGCGGTCGCGGCGGACGCTGAAGCCGGAGAGGTGGAAACCCTCGAGG
CCGAGCTTCGATGCCTGGAACGCCGCGCTCCTCACAGCCGGAGAAGAGTA
TCATCGACAGCCGCACACCACCGCCGCCGCTCCGCTTCCCCCCCCCGCCT
CCCGCTGCCTGCTGGACGGGGACTACGCTCCGCGGTAGTGGAAACCCTCG
AGGCCGAGCTTCGATGCCTGGAACGCCGCGCTCCTCACAGCCGGAGAAGA
GTATCATCGACAGCCGCACACCACCGCCGCCGCTCCGCTTCCCCCCCCCG
CCTCCCGCTGCCTGCTGGACGGGGACTACGCTCCGCGGTA
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