mRNA_Ecto-sp9_F_contig10229.252.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10229.252.1
Unique NamemRNA_Ecto-sp9_F_contig10229.252.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10229.252.1 vs.
Match: SnoaL-like (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P0_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.180e-32
Identity = 75/84 (89.29%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 QTLRTLVEINVLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNEDLEDTDTLAEFVDQCKVIASSLFEDXXXXXXXXWR 252
            QTLRTLVEI VLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNEDLEDTDTLAEFVDQCKVIASSLFED        WR
Sbjct:  414 QTLRTLVEIKVLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNEDLEDTDTLAEFVDQCKVIASSLFEDDKRRKKRRWR 497
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BLAST of mRNA_Ecto-sp9_F_contig10229.252.1 vs.
Match: UVR (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L954_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 1.910e-31
Identity = 74/84 (88.10%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    1 QTLRTLVEINVLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNEDLEDTDTLAEFVDQCKVIASSLFEDXXXXXXXXWR 252
            QTLRTLVEI VLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNEDLEDTDTLAEFVDQCKVIASSLFE+        WR
Sbjct:  597 QTLRTLVEIKVLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNEDLEDTDTLAEFVDQCKVIASSLFEEDKRRKKRRWR 680
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BLAST of mRNA_Ecto-sp9_F_contig10229.252.1 vs.
Match: SnoaL-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFM1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.540e-9
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    7 LRTLVEINVLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNEDLEDTDTLAEFVDQCKVI 201
            LR L     L + E+ +L+TDVIKHAA +EAS  E+AYELLLAH NED+ D   + +FVDQCK +
Sbjct:  303 LRRLGREGRLNQREKAQLITDVIKHAAGEEASMAEIAYELLLAHDNEDMADQGRVEDFVDQCKAL 367
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10229.252.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
SnoaL-like1.180e-3289.29domain-containing protein n=1 Tax=Ectocarpus silic... [more]
UVR1.910e-3188.10domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
SnoaL-like4.540e-955.38domain-containing protein n=1 Tax=Tribonema minus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10229contigEcto-sp9_F_contig10229:950..3057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1461
Cds size255
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10229.252.1prot_Ecto-sp9_F_contig10229.252.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10229 950..1852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.379805-CDS-Ecto-sp9_F_contig10229:949..10601622928219.379805-CDS-Ecto-sp9_F_contig10229:949..1060Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10229 950..1060 +
1692277800.0465891-CDS-Ecto-sp9_F_contig10229:949..10601692277800.0465891-CDS-Ecto-sp9_F_contig10229:949..1060Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10229 950..1060 +
1622928219.3918967-CDS-Ecto-sp9_F_contig10229:1434..15181622928219.3918967-CDS-Ecto-sp9_F_contig10229:1434..1518Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10229 1435..1518 +
1692277800.0576282-CDS-Ecto-sp9_F_contig10229:1434..15181692277800.0576282-CDS-Ecto-sp9_F_contig10229:1434..1518Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10229 1435..1518 +
1622928219.4036682-CDS-Ecto-sp9_F_contig10229:1792..18521622928219.4036682-CDS-Ecto-sp9_F_contig10229:1792..1852Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10229 1793..1852 +
1692277800.0659592-CDS-Ecto-sp9_F_contig10229:1792..18521692277800.0659592-CDS-Ecto-sp9_F_contig10229:1792..1852Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10229 1793..1852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928219.413318-UTR-Ecto-sp9_F_contig10229:1852..30571622928219.413318-UTR-Ecto-sp9_F_contig10229:1852..3057Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10229 1853..3057 +
1692277800.0756748-UTR-Ecto-sp9_F_contig10229:1852..30571692277800.0756748-UTR-Ecto-sp9_F_contig10229:1852..3057Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10229 1853..3057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10229.252.1

>prot_Ecto-sp9_F_contig10229.252.1 ID=prot_Ecto-sp9_F_contig10229.252.1|Name=mRNA_Ecto-sp9_F_contig10229.252.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=85bp
QTLRTLVEINVLEKDEQRRLVTDVIKHAADDEASAVEVAYELLLAHTNED
LEDTDTLAEFVDQCKVIASSLFEDDKRRKKRRWR*
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mRNA from alignment at Ecto-sp9_F_contig10229:950..3057+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10229.252.1 ID=mRNA_Ecto-sp9_F_contig10229.252.1|Name=mRNA_Ecto-sp9_F_contig10229.252.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2108bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10229:950..3057+ (Ectocarpus species9 EcSCA_722f female)
CAGACGTTGCGGACCCTGGTGGAGATCAACGTGCTGGAGAAGGACGAGCA
GCGCCGCCTGGTGACGGACGTGATCAAGCACGCCGCGGACGACGAGGCCA
GCGCTGTCGAGGTACGTGAATCGTCATTTTTTCTCCCACACGCGAACGGC
CCGGTGGGCGCCCGCCAGAAGAGAGCTCTTTCTGATGTGCCTAGACGATA
CTGTCAAAGACGTGGTATAGGGTGCTGACTCCTGACACGCCGTGCGTGAA
TTATCCTGTTTTCTCCCACACACGGACGGCCAGGTGGGCGCGCACAACAA
GAGAGCTCTTTCTGGTATGCGTAGACGATTTTTGCTGTCAAAGACGGCAC
TGACACTTAACTCCCTCTCTCCCTGACATCCCATGTGTGATACCCCCGTC
GCCAACGGTAAATGGCCTAACCGCTAAGGCATTCGAAAAATGAGTACACC
CCGCCACCCCCCCCGCTGACGAACGGCTGTGATAGGTGGCGTACGAGCTG
TTGCTGGCGCATACTAACGAGGACCTGGAGGACACAGACACTCTCGCTGA
GTTCGTGGACCAATGCAAGGTGAGAGAGGCATGGGGAAGGGAGGACAAGC
CATCATGTTCAGGAGGGGGGGCCATAAGGCCAAGGAGAGAGAGACGCGTT
TTTTTTGTGGCGTTTTTTTTTTGTTTTCGTCTTGGTTGTTGTCACCTCGC
TCGGGCTTCCCGCTGCTCGAAAGAGATGGATCAGGAGTGTGAATGGAAGT
GGTCGACTCGAGATGTTTAGCAAACCTCCTGCCCCCCAGCGTTGGTGTGA
CACTCGCTGCTCGTTCGTCGTTTTTGCGTGTGCGCTACAACAGGTTATAG
CGTCGTCGTTGTTTGAGGACGACAAGCGAAGGAAGAAGCGACGGTGGCGT
TAGTGTTGTTGGTGGTCAACGGAGCAACATGAGAGAGGAACTAAGGACGA
AGCTAGAAGAATCACACGACCGCGGCTTCCGCGTGTGCGAGGGAAAGGAA
TAGTGATGGTCCAAACAATTGATGAGCTACAAATCACTCGGTACAAACGA
AGCCGATATTACACCGAGACGACACGTGCGAGCTAATAACGGCGTCGGGG
TTTAGCTGTGTTGCCTGCCACCTGTGAGCCAAGCGTGCCTTGCTGCATCT
CGGGATGATGTTGGTAGAACCGACCTCCTTTCGGGCCAGGGAGAGCGAAA
CGAGCAAGACAGCATAGCAGCGCACGGAGGACGGTAACACCCCCCCTGTA
CATTCTCCTCCGCGCTTCCCCCCCTGCTTATGGGCCAAGCAGACTAGAAA
GTGGTACCAGTGAGCAGGGGCCGAAAGTGCGCCAAGTAGTAGGCGCGTGA
GGTTGAAGCGCTTGTACGTGCTGATCAGCTCCGTGTGTGGGACGGCGAGA
TGTCTCGAATCATCCGAATTATGCCGTTACTGGTCTGCTCCTTTCCCTAC
TGTTGCCTGGATATGTGGTCGTATTCATGACCACAAGAAACTACTGGCAA
GAAACTACTGGTGCCTTGGATTATTAGGATTTTATTGGTCCAAGCCCGGC
ATACATTTACGCGGAGAAGAGGTGCCCGCTGTGGCTACCACCACCATGCG
CGCCAACTACAAAGCATGTAGGTTAGGTTTCCCTTCGATGTATTGCATGT
CCGTACATGCTCGTTGAAAGGTGATCGCACGCCAGGACACTGATTGGATG
GCGGGAGGGCAGCAGGCCGCAGCGACACCTAGATTCAGTCATTCCTCCGC
ATCTCTTTGAACAGTTTGTGTTTCTTGCTGTAGACTAAGCTAATCGAGAC
GTCGTGTTTTTTTCCTTGCCTGTTGATTGAAGGCGCAAGAATAGTTACCG
AGTGGAAGCATGGTGGTGACTTTGACACGGACAAACACTGCTGTGCGAAA
GGAACCAAAAATGCCTTGAATGCCGAAGCACACCTGAGTGGCAGTCACCC
CGCCCCTTTTCTGTCGTGTTTTTCGACTTGTGTTTTTGGGGGACAGGCTC
CGAAACATGTGTGGGACCATGACAGCACGTAGACACAGTACCATACAGCA
GAGCAGACGAAGGATCATCGAAGCTTGTTCCTGCAACCAGCCGACAGCGC
CCGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10229:950..3057+

>mRNA_Ecto-sp9_F_contig10229.252.1 ID=mRNA_Ecto-sp9_F_contig10229.252.1|Name=mRNA_Ecto-sp9_F_contig10229.252.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10229:950..3057+ (Ectocarpus species9 EcSCA_722f female)
CAGACGTTGCGGACCCTGGTGGAGATCAACGTGCTGGAGAAGGACGAGCA
GCGCCGCCTGGTGACGGACGTGATCAAGCACGCCGCGGACGACGAGGCCA
GCGCTGTCGAGCAGACGTTGCGGACCCTGGTGGAGATCAACGTGCTGGAG
AAGGACGAGCAGCGCCGCCTGGTGACGGACGTGATCAAGCACGCCGCGGA
CGACGAGGCCAGCGCTGTCGAGGTGGCGTACGAGCTGTTGCTGGCGCATA
CTAACGAGGACCTGGAGGACACAGACACTCTCGCTGAGTTCGTGGACCAA
TGCAAGGTGGCGTACGAGCTGTTGCTGGCGCATACTAACGAGGACCTGGA
GGACACAGACACTCTCGCTGAGTTCGTGGACCAATGCAAGGTTATAGCGT
CGTCGTTGTTTGAGGACGACAAGCGAAGGAAGAAGCGACGGTGGCGTTAG
GTTATAGCGTCGTCGTTGTTTGAGGACGACAAGCGAAGGAAGAAGCGACG
GTGGCGTTAG
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