mRNA_Ecto-sp9_F_contig10189.218.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10189.218.1
Unique NamemRNA_Ecto-sp9_F_contig10189.218.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: G-protein (coupled receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI2_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.730e-37
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH
Sbjct:  386 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 455
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ94_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 4.950e-37
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH
Sbjct:  485 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 554
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: CSON011698 (protein n=1 Tax=Culicoides sonorensis TaxID=179676 RepID=A0A336LQR9_CULSO)

HSP 1 Score: 80.5 bits (197), Expect = 4.170e-16
Identity = 36/70 (51.43%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SSV+LMR+N+P  +RV IT VLGG+ F+FY RWFDT+FL+S   T V L   H
Sbjct:  376 SNIIVLVMAQIMGMYFCSSVLLMRMNMPAEYRVIITEVLGGLHFNFYHRWFDTIFLVSSLATIVVLYLLH 445
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: ABA_GPCR (domain-containing protein (Fragment) n=1 Tax=Oryctes borbonicus TaxID=1629725 RepID=A0A0T6B9Z9_9SCAR)

HSP 1 Score: 76.3 bits (186), Expect = 7.460e-16
Identity = 31/70 (44.29%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SS++L+R+N+PP +R+ IT VLG ++F+FY RWFD +FL+S   + +TL   H
Sbjct:   85 SNIIVLMLAQVMGMYFLSSILLLRMNMPPEYRIIITQVLGDLQFNFYHRWFDVIFLVSALTSIITLYLAH 154
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: Golgi (pH regulator n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8ALQ4_CULPI)

HSP 1 Score: 76.3 bits (186), Expect = 7.800e-16
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SSV+LMR+N+P  +R  IT VLGG+ F+FY RWFD +FL+S   T V L   H
Sbjct:   86 SNIIVLVLAQIMGMYFCSSVLLMRMNMPAEYRTIITEVLGGLHFNFYHRWFDVIFLVSALTTIVILYLLH 155
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: SFRICE_034953 ((Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WHP1_SPOFR)

HSP 1 Score: 76.6 bits (187), Expect = 1.200e-15
Identity = 33/70 (47.14%), Postives = 50/70 (71.43%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SSV+LMR+N+PP +R+ IT VLG ++F+FY RWFD +FL+S   +  TL   H
Sbjct:  127 SNIIVLILAQIMGMYFCSSVLLMRMNMPPEYRIIITQVLGDLQFNFYHRWFDVIFLVSALTSIFTLYLAH 196
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: Predicted (G-protein coupled receptor (Fragment) n=1 Tax=Culex tarsalis TaxID=7177 RepID=B8RJ51_CULTA)

HSP 1 Score: 76.3 bits (186), Expect = 2.020e-15
Identity = 34/70 (48.57%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SSV+LMR+N+P  +R  IT VLGG+ F+FY RWFD +FL+S   T V L   H
Sbjct:  134 SNIIVLVLAQIMGMYFCSSVLLMRMNMPAEYRTIITEVLGGLHFNFYHRWFDVIFLVSALTTIVILYLLH 203
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: Golgi (pH regulator n=1 Tax=Bradysia coprophila TaxID=38358 RepID=UPI00187DAA08)

HSP 1 Score: 78.2 bits (191), Expect = 2.750e-15
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SSV+LMR+N+P  +RV IT VLGG+ F+FY RWFD +FL+S   T V L   H
Sbjct:  373 SNIIVLVLAQIMGMYFCSSVLLMRMNMPSEYRVIITEVLGGLHFNFYHRWFDVIFLVSAITTIVVLYLLH 442
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BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: Homeobox (domain-containing protein n=1 Tax=Anopheles quadriannulatus TaxID=34691 RepID=A0A182WR70_ANOQN)

HSP 1 Score: 78.2 bits (191), Expect = 2.970e-15
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SSV+LMR+N+P  +RV IT VLGG+ F+FY RWFD +FL+S   T V L   H
Sbjct:  657 SNIIVLVLAQIMGMYFCSSVLLMRMNMPAEYRVIITEVLGGLHFNFYHRWFDVIFLVSALATIVVLYLLH 726
[Close]
BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Match: Homeobox (domain-containing protein n=1 Tax=Anopheles sinensis TaxID=74873 RepID=A0A084VEV9_ANOSI)

HSP 1 Score: 78.2 bits (191), Expect = 2.980e-15
Identity = 35/70 (50.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:    1 AQVLSLLWSMLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISGCVTAVTLLAFH 210
            + ++ L+ + +MG YF SSV+LMR+N+P  +RV IT VLGG+ F+FY RWFD +FL+S   T V L   H
Sbjct:  791 SNIIVLVLAQIMGMYFCSSVLLMRMNMPAEYRVIITEVLGGLHFNFYHRWFDVIFLVSALATIVVLYLLH 860
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10189.218.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G-protein2.730e-37100.00coupled receptor n=1 Tax=Ectocarpus siliculosus Ta... [more]
Uncharacterized4.950e-37100.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
CSON0116984.170e-1651.43protein n=1 Tax=Culicoides sonorensis TaxID=179676... [more]
ABA_GPCR7.460e-1644.29domain-containing protein (Fragment) n=1 Tax=Oryct... [more]
Golgi7.800e-1648.57pH regulator n=2 Tax=Culex pipiens TaxID=7175 RepI... [more]
SFRICE_0349531.200e-1547.14(Fragment) n=1 Tax=Spodoptera frugiperda TaxID=710... [more]
Predicted2.020e-1548.57G-protein coupled receptor (Fragment) n=1 Tax=Cule... [more]
Golgi2.750e-1550.00pH regulator n=1 Tax=Bradysia coprophila TaxID=383... [more]
Homeobox2.970e-1550.00domain-containing protein n=1 Tax=Anopheles quadri... [more]
Homeobox2.980e-1550.00domain-containing protein n=1 Tax=Anopheles sinens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10189contigEcto-sp9_F_contig10189:152..891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.8
Seed ortholog evalue1.4e-26
Seed eggNOG ortholog2880.D8LHI2
Preferred nameGPR89A
KEGG koko:K22078,ko:K22193
KEGG TC1.A.38
GOsGO:0000003,GO:0000139,GO:0000166,GO:0001101,GO:0001882,GO:0001883,GO:0002020,GO:0002790,GO:0003006,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005798,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006873,GO:0006885,GO:0006928,GO:0006950,GO:0006996,GO:0007030,GO:0007032,GO:0007275,GO:0008104,GO:0008150,GO:0008289,GO:0008308,GO:0008509,GO:0009266,GO:0009306,GO:0009409,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009987,GO:0010033,GO:0010228,GO:0010256,GO:0010427,GO:0010468,GO:0012505,GO:0015031,GO:0015075,GO:0015103,GO:0015267,GO:0015318,GO:0015698,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0017076,GO:0019001,GO:0019222,GO:0019725,GO:0019840,GO:0019899,GO:0022414,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0030003,GO:0030004,GO:0030587,GO:0030641,GO:0030660,GO:0031090,GO:0031224,GO:0031406,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032580,GO:0032940,GO:0033036,GO:0033293,GO:0033554,GO:0033993,GO:0034220,GO:0035639,GO:0036094,GO:0040011,GO:0042175,GO:0042221,GO:0042562,GO:0042592,GO:0042886,GO:0043167,GO:0043168,GO:0043177,GO:0043178,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043588,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045851,GO:0046903,GO:0048388,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0048870,GO:0048878,GO:0050789,GO:0050801,GO:0050896,GO:0051020,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051674,GO:0051703,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0061458,GO:0065007,GO:0065008,GO:0070417,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090702,GO:0097159,GO:0097305,GO:0097367,GO:0097708,GO:0098588,GO:0098656,GO:0098771,GO:0098791,GO:0098805,GO:0098827,GO:0099120,GO:1901265,GO:1901363,GO:1901700
EggNOG free text desc.intracellular pH reduction
EggNOG OGsKOG2417@1,KOG2417@2759
EC3.2.1.107
COG Functional cat.S
CAZyGH65
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000
Hectar predicted targeting categorysignal anchor
Exons2
Model size210
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10189.218.1prot_Ecto-sp9_F_contig10189.218.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10189 179..891 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.0391593-UTR-Ecto-sp9_F_contig10189:151..1781622928214.0391593-UTR-Ecto-sp9_F_contig10189:151..178Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10189 152..178 +
1692277797.8985672-UTR-Ecto-sp9_F_contig10189:151..1781692277797.8985672-UTR-Ecto-sp9_F_contig10189:151..178Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10189 152..178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928214.0576513-CDS-Ecto-sp9_F_contig10189:178..2791622928214.0576513-CDS-Ecto-sp9_F_contig10189:178..279Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10189 179..279 +
1692277797.9162824-CDS-Ecto-sp9_F_contig10189:178..2791692277797.9162824-CDS-Ecto-sp9_F_contig10189:178..279Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10189 179..279 +
1622928214.0704288-CDS-Ecto-sp9_F_contig10189:809..8911622928214.0704288-CDS-Ecto-sp9_F_contig10189:809..891Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10189 810..891 +
1692277797.9307823-CDS-Ecto-sp9_F_contig10189:809..8911692277797.9307823-CDS-Ecto-sp9_F_contig10189:809..891Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10189 810..891 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10189.218.1

>prot_Ecto-sp9_F_contig10189.218.1 ID=prot_Ecto-sp9_F_contig10189.218.1|Name=mRNA_Ecto-sp9_F_contig10189.218.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=61bp
MLMGTYFTSSVILMRVNLPPRHRVAITAVLGGMRFSFYQRWFDTVFLISG
CVTAVTLLAFH
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mRNA from alignment at Ecto-sp9_F_contig10189:152..891+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10189.218.1 ID=mRNA_Ecto-sp9_F_contig10189.218.1|Name=mRNA_Ecto-sp9_F_contig10189.218.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=740bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10189:152..891+ (Ectocarpus species9 EcSCA_722f female)
GCGCAGGTGCTATCGTTGCTCTGGTCCATGCTGATGGGCACGTACTTCAC
CTCGAGCGTGATCTTGATGCGCGTGAACCTTCCCCCGAGGCACCGGGTCG
CGATCACGGCTGTGCTTGGCGGGATGAGGTAGGTTGTTGCCCGAAACGTA
GGCGAAACTAAGGTGTTTATAGAGCCGAAGGGCGACAGCTAGCAACCGCA
CCCCGCTACGGGAGAAACCTGTACTCGATGCTCTTAAGATTTACAACGAC
CGCGATCGACGGAGTGAGTCTTCCTATGCTTCGGTGTTTATGGCTGTAGG
TCCGCTATTTTGGAGTCATCTGTATCGATCTCGTCTGGGCGCCTCGTGTG
CCAGTTCCCGTTAGAGGCATGGGGGTATTGTCCTCGAGTGACATGGGAGC
GCCACCTGTAACGCTGTGCTTGTCCGCGCGAAGCTCTCCGATTTTCACGA
CGTGTTTGATCCGAGGGTTTCCGCTGCGTTCAGGTGCGCGTCTTTCAACG
TTACCTTTTGGTTCTCACGAGCGCTGAGTCGGAATCGGGCGCAGCTACGA
CGGCATTGGTAGTGTGCCCTCACAGGACTACCTAACTGCCCGCCGCCGCT
ATTATGCCGCAATGTTGCAATAACACTCCTTGTTTCGTGGACACGCGTAA
CGGCACAGGTTCAGCTTCTACCAGCGGTGGTTCGACACCGTGTTCTTGAT
CTCCGGCTGCGTGACCGCCGTCACGCTCCTGGCGTTCCAC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10189:152..891+

>mRNA_Ecto-sp9_F_contig10189.218.1 ID=mRNA_Ecto-sp9_F_contig10189.218.1|Name=mRNA_Ecto-sp9_F_contig10189.218.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=366bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10189:152..891+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGATGGGCACGTACTTCACCTCGAGCGTGATCTTGATGCGCGTGAA
CCTTCCCCCGAGGCACCGGGTCGCGATCACGGCTGTGCTTGGCGGGATGA
GATGCTGATGGGCACGTACTTCACCTCGAGCGTGATCTTGATGCGCGTGA
ACCTTCCCCCGAGGCACCGGGTCGCGATCACGGCTGTGCTTGGCGGGATG
AGGTTCAGCTTCTACCAGCGGTGGTTCGACACCGTGTTCTTGATCTCCGG
CTGCGTGACCGCCGTCACGCTCCTGGCGTTCCACGTTCAGCTTCTACCAG
CGGTGGTTCGACACCGTGTTCTTGATCTCCGGCTGCGTGACCGCCGTCAC
GCTCCTGGCGTTCCAC
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