mRNA_Ecto-sp9_F_contig10166.200.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10166.200.1
Unique NamemRNA_Ecto-sp9_F_contig10166.200.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig10166.200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD61_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 1.670e-41
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    7 EGEGMLRMLDVQAEAMRLNADVQSDFVMFIQAFMDRGAFPAWELESILRISTAVLAVMGVQRALLALGHAVATVVDRESYGSYYR 261
            EGEGMLRMLDVQA+AMRLNADVQSDFVMFIQAFMDRGAFP WELESILRISTAVLAVMGVQRALL LGHAVATVVDRESYGSYYR
Sbjct: 1142 EGEGMLRMLDVQADAMRLNADVQSDFVMFIQAFMDRGAFPVWELESILRISTAVLAVMGVQRALLTLGHAVATVVDRESYGSYYR 1226
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BLAST of mRNA_Ecto-sp9_F_contig10166.200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0H2_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.610e-39
Identity = 78/86 (90.70%), Postives = 81/86 (94.19%), Query Frame = 1 
Query:    4 EEGEGMLRMLDVQAEAMRLNADVQSDFVMFIQAFMDRGAFPAWELESILRISTAVLAVMGVQRALLALGHAVATVVDRESYGSYYR 261
            EEGEG+LRMLDVQA+AMRLNADVQSDFVMFIQAFMDRGAFP WELESILRI+TAVLAVMGVQRALL LGHAVATVVD E YGSY R
Sbjct:  471 EEGEGVLRMLDVQADAMRLNADVQSDFVMFIQAFMDRGAFPVWELESILRINTAVLAVMGVQRALLTLGHAVATVVDHEFYGSYSR 556
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BLAST of mRNA_Ecto-sp9_F_contig10166.200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDY4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 4.630e-6
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1 
Query:   25 RMLDVQAEAMRLNADVQSDFVMFIQAFMDRGAFPAWELESILRISTAVLAVMGVQRALLALGHAVATVVDRESYGSYY 258
            R+L +QAE  RLN  + SD V ++       A P+  L   LR +T   +VM +QR LLALGHAV  +++RE+Y  YY
Sbjct: 1148 RLLQLQAETRRLNQAIDSDMVAYMLRHRVTAARPS--LFFALRFTTTTFSVMRLQRGLLALGHAVTDLLERENYIFYY 1223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10166.200.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.670e-4196.47protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.610e-3990.70protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.630e-643.59protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10166contigEcto-sp9_F_contig10166:1059..2067 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size557
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10166.200.1prot_Ecto-sp9_F_contig10166.200.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10166 1077..1774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928211.7886477-UTR-Ecto-sp9_F_contig10166:1058..10761622928211.7886477-UTR-Ecto-sp9_F_contig10166:1058..1076Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10166 1059..1076 +
1692277796.891058-UTR-Ecto-sp9_F_contig10166:1058..10761692277796.891058-UTR-Ecto-sp9_F_contig10166:1058..1076Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10166 1059..1076 +
1622928211.8311687-UTR-Ecto-sp9_F_contig10166:1774..20671622928211.8311687-UTR-Ecto-sp9_F_contig10166:1774..2067Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10166 1775..2067 +
1692277796.9200804-UTR-Ecto-sp9_F_contig10166:1774..20671692277796.9200804-UTR-Ecto-sp9_F_contig10166:1774..2067Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10166 1775..2067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928211.805358-CDS-Ecto-sp9_F_contig10166:1076..11711622928211.805358-CDS-Ecto-sp9_F_contig10166:1076..1171Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10166 1077..1171 +
1692277796.900527-CDS-Ecto-sp9_F_contig10166:1076..11711692277796.900527-CDS-Ecto-sp9_F_contig10166:1076..1171Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10166 1077..1171 +
1622928211.8170826-CDS-Ecto-sp9_F_contig10166:1623..17741622928211.8170826-CDS-Ecto-sp9_F_contig10166:1623..1774Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10166 1624..1774 +
1692277796.90903-CDS-Ecto-sp9_F_contig10166:1623..17741692277796.90903-CDS-Ecto-sp9_F_contig10166:1623..1774Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10166 1624..1774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10166.200.1

>prot_Ecto-sp9_F_contig10166.200.1 ID=prot_Ecto-sp9_F_contig10166.200.1|Name=mRNA_Ecto-sp9_F_contig10166.200.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=82bp
MLRMLDVQAEAMRLNADVQSDFVMFIQAFMDRGAFPAWELESILRISTAV
LAVMGVQRALLALGHAVATVVDRESYGSYYR*
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mRNA from alignment at Ecto-sp9_F_contig10166:1059..2067+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10166.200.1 ID=mRNA_Ecto-sp9_F_contig10166.200.1|Name=mRNA_Ecto-sp9_F_contig10166.200.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1009bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10166:1059..2067+ (Ectocarpus species9 EcSCA_722f female)
GTCGAAGAAGGGGAAGGCATGCTGCGGATGCTGGATGTTCAGGCGGAAGC
GATGCGGCTCAACGCCGACGTGCAGAGCGACTTTGTCATGTTCATACAGG
CGTTCATGGACAGGTGAGGGGGGTACCACCCGCTGCTGCTGCTGCTGCTG
CATTTCGTTCATGTGCAACTTTTATCCTGGGGAACGAGTTGGAGGCTGTT
TTGCTCTCCTGGCGTTACTTTATTTGTTACTTTGTGCGAGTGACGAGCTC
CAAACGTCTTGCTTTCAAGTAGCTGGCACGCTGCTCACCGACAACGACCT
CGCATTCTTGTCTTCACTAGTGGACAGAGTGCGCGGAGTGATTGGATCGC
CGCAGGTGCATTGAAGCAGGCATCATCCGGTGGGATTCATCTACGGGCTT
GCTGCGTGGTCAATGCTTGTCTCTCAGGCTACTTCTATATTACCGTATAG
TCTAGTGCTGTTACCGTGCACGCGGGTCATCGCGCACCCCCCTTGTAGAC
CGACCTTCAAAGATCGATTGCTCTCGAGCAACACTTGTTCTGGTTCCACC
CCCTGATACATGCAGAGGGGCGTTTCCGGCGTGGGAGCTGGAGTCGATTC
TCCGGATAAGCACGGCCGTGCTGGCCGTCATGGGCGTGCAGAGGGCCCTG
CTAGCCTTGGGGCACGCCGTGGCAACCGTGGTCGATCGCGAGTCTTACGG
CTCCTACTACCGTTGATGGTGGTTGGTTTGCGACGATGACAAGGCATGGA
TCGTGTGGACTATGTACACGCCCCATGGCTTTAAGCAACATGTGCGCGTG
TTCCGGGTGCAATAAACACCTCGCGATGAACGTTGTTTGTTCGCATCGGC
CCGCCTGCTGAATGTATTTGTCTTCGATTCTCGACATTCGGCGCCCTACC
GATGAAAAGCCTGAGCGTGATGATGATGTGATGTTGCCACCCATGACTCG
TTTTGGGTAACAAGAATTGCGGTGGACACTCCGTGAACCAGGAGCAAACA
CGAACTGGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10166:1059..2067+

>mRNA_Ecto-sp9_F_contig10166.200.1 ID=mRNA_Ecto-sp9_F_contig10166.200.1|Name=mRNA_Ecto-sp9_F_contig10166.200.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10166:1059..2067+ (Ectocarpus species9 EcSCA_722f female)
ATGCTGCGGATGCTGGATGTTCAGGCGGAAGCGATGCGGCTCAACGCCGA
CGTGCAGAGCGACTTTGTCATGTTCATACAGGCGTTCATGGACAGATGCT
GCGGATGCTGGATGTTCAGGCGGAAGCGATGCGGCTCAACGCCGACGTGC
AGAGCGACTTTGTCATGTTCATACAGGCGTTCATGGACAGAGGGGCGTTT
CCGGCGTGGGAGCTGGAGTCGATTCTCCGGATAAGCACGGCCGTGCTGGC
CGTCATGGGCGTGCAGAGGGCCCTGCTAGCCTTGGGGCACGCCGTGGCAA
CCGTGGTCGATCGCGAGTCTTACGGCTCCTACTACCGTTGAAGGGGCGTT
TCCGGCGTGGGAGCTGGAGTCGATTCTCCGGATAAGCACGGCCGTGCTGG
CCGTCATGGGCGTGCAGAGGGCCCTGCTAGCCTTGGGGCACGCCGTGGCA
ACCGTGGTCGATCGCGAGTCTTACGGCTCCTACTACCGTTGA
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