mRNA_Ecto-sp9_F_contig124.1897.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: HAMP (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT16_ECTSI) HSP 1 Score: 1112 bits (2877), Expect = 0.000e+0 Identity = 588/605 (97.19%), Postives = 594/605 (98.18%), Query Frame = 2
Query: 152 MVFRVVSLCKPCLNQAYPLRKQLLLSFLAFATVSLLLALAVVMGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAESNTVEVPEDEMAAITQTARLDLLWPAVYINSYETKGVYVGVDLSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFEPVVGMVDLIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDPARGVGGGRFLDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERTGYPMNPFTSGPSALTAXXXXXXXXXXXXXXNAAVPGPMS 1966
M+FRVV LCKPCLNQAYPLRKQLLLSFLAFAT SLLLALAVV+GTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAES TVEVPEDEMA ITQTARLDLLWPAVYINSYETKGVYVGV+LSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLE+VQESVEAINFLDTGYSILATADEGVVLAA VWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFE VVGMVD+IWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKD ARGVGGGRFLDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEER GYPMNPFTSGPSA T XXXXXXXXXXXXXX+AAV GPMS
Sbjct: 1 MIFRVVGLCKPCLNQAYPLRKQLLLSFLAFATASLLLALAVVIGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAESYTVEVPEDEMATITQTARLDLLWPAVYINSYETKGVYVGVELSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEEVQESVEAINFLDTGYSILATADEGVVLAAGVWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFETVVGMVDVIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDSARGVGGGRFLDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERAGYPMNPFTSGPSARTXXXXXXXXXXXXXXXDAAVLGPMS 605
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: Methyl-accepting (chemotaxis protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT17_ECTSI) HSP 1 Score: 902 bits (2332), Expect = 0.000e+0 Identity = 483/630 (76.67%), Postives = 519/630 (82.38%), Query Frame = 2
Query: 152 MVFRVVSLCKPCLNQAYPLRKQLLLSFLAFATVSLLLALAVVMGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAESNTVEVPEDEMAAITQTARLDLLWPAVYINSYETKGVYVGVDLSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFEPVVGMVDLIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDPARGVGGGR----------------FLDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERTGYPMNPFTS---------GPSALTAXXXXXXXXXXXXXXNAAVPGPMS 1966
M FR VSLCKPCLN+ YPLR QLLLSFLA A VSLLLALAVVMGTTAFIGDKA+ AR SLENQIKRHLTNASEE+AT + FR LQYGVLDVTAFALRD RQE+LVL GG+EGYPLTPAHTDLRDTEIATSAEANLQNF+RM+FEVDLSRSTWYYADAES TVEVPEDEMA ITQTARLDLLWPAVYINSY+TKGVYVGV+LSTTGRT RYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWY+ AED DS T LG AII+DP+K AIDD+WL++LARAVYS+SG+T G+LLGVVGMDVRLEQVQESVE INFL+TGYSILATAD G+VLAA VWD+DA+EEAPTVC +G GICSG DGD W DL+A+ ENG +KSFTS ST GVDEEWILVAAPVEG F TA SGGAGTVTHYILSAVPRNEIFEPVVGM D I DST+QII+ TAIVAC TLVAVALSVYFLAGSI RPIVKMT AARSI ADGA+TDVFGSV A WG ++D AR GR LDYLLCRGDDEISTLGREF LMITGLG+RG AAEA GLM+ER GYP NP+ + GPSA AA PGP S
Sbjct: 1 MPFRAVSLCKPCLNKKYPLRTQLLLSFLALAAVSLLLALAVVMGTTAFIGDKAKSEARDSLENQIKRHLTNASEESATAVREWFRNLQYGVLDVTAFALRDARQENLVLDGGNEGYPLTPAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESYTVEVPEDEMATITQTARLDLLWPAVYINSYDTKGVYVGVELSTTGRTIRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYQGAEDAAVDSGTSLGAAIISDPYKDAIDDEWLLSLARAVYSDSGSTRGNLLGVVGMDVRLEQVQESVEGINFLNTGYSILATAD-GIVLAAGVWDKDATEEAPTVCAIGNGICSGSDGDEWVDLLAEIENGGIKSFTSTSTAGVDEEWILVAAPVEGNFATATSGGAGTVTHYILSAVPRNEIFEPVVGMADSIRDSTVQIIVTTAIVACFTLVAVALSVYFLAGSITRPIVKMTSAARSIAADGAKTDVFGSVMATWGARRDSARDSADGRGIDVSTPGRFTVNRTACLDYLLCRGDDEISTLGREFSLMITGLGRRGSAAEATGLMDERAGYPKNPYAATIVKRPPPTGPSA---------------SGGAAAPGPKS 614
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: HAMP (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KHM1_9PHAE) HSP 1 Score: 740 bits (1910), Expect = 4.950e-259 Identity = 406/588 (69.05%), Postives = 464/588 (78.91%), Query Frame = 2
Query: 176 CKPCLNQAYPLRKQLLLSFLAFATVSLLLALAVVMGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAESNTVEVP--EDEMAAITQTARLDLLWPAVYINSYETKGVYVGVDLSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAI--DDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAA-AVWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWIL--VAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFEPVVGMVDLIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDPARGVG-------GGRF-------LDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERTGYPMNPFTS 1876
CKPCLN+ YPLRKQLLLS L+ A VSLLLAL VVMGTTA+IGDKA AR SLE QI+RHL +AS EAA TIG RFRK+QYGVLDVTAFALRD QEDLVLAGG+EGYPL+PAHTDLRD EI S+EANL F+R + VDLSRS WYYADAESNTVEV ED++ I Q+ARLDLLWPA+YINS +TKG+ +GV+LSTT + FRYFPGTDLS VEGS FACE V+EDG+ +PC+DPT R WYE A+ DSETFLG AI+T P+ A+ ++DWLV LARAVY NSGTTSGSLLGVVG+D+RLEQVQESVE INFL+TGYSILATADEGVVLAA A WD D +E VCDLG GICSG +GD W DL+ +T+NG +K+F + ST G +AAP+ TF TA+SGG G VTHYILSAVPR+EIF+PV GM DLI +ST +I++ TAIVAC TLVAVALSVYFLAGSI RPIVKMT AARSI+ DGA+TDVFGSVAA WG ++D + G G GR+ LDYLLCRGDDEISTL REFQLMITGLG+RG AAEA GL E YP NPFT+
Sbjct: 10 CKPCLNKKYPLRKQLLLSSLSLAAVSLLLALGVVMGTTAYIGDKAESEARDSLEAQIERHLRDASVEAAATIGERFRKIQYGVLDVTAFALRDAFQEDLVLAGGEEGYPLSPAHTDLRDIEITESSEANLVGFSRQDVLVDLSRSVWYYADAESNTVEVSAAEDQLK-INQSARLDLLWPAMYINSNDTKGILLGVELSTTNQMFRYFPGTDLSAVEGSAFACEDVQEDGT-SPCYDPTERDWYELADAAVMDSETFLGGAIVTPPYTDAVGSENDWLVTLARAVYRNSGTTSGSLLGVVGVDMRLEQVQESVEGINFLETGYSILATADEGVVLAAGAAWDRDTAENITKVCDLGNGICSGDEGDSWEDLLLETKNGGIKTFKAVSTTGXXXXXXXXXIAAPITTTFGTAVSGGEGKVTHYILSAVPRDEIFQPVDGMADLIRESTTEIMVTTAIVACSTLVAVALSVYFLAGSITRPIVKMTSAARSISKDGAKTDVFGSVAATWGGRRDGSSGAGDSIDSRTAGRYTMNRTACLDYLLCRGDDEISTLAREFQLMITGLGRRGAAAEATGLAEASV-YPKNPFTT 594
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: HAMP (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHM8_9PHAE) HSP 1 Score: 719 bits (1856), Expect = 6.950e-251 Identity = 418/639 (65.41%), Postives = 452/639 (70.74%), Query Frame = 2
Query: 278 MGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQE-------------------------DLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAESNTVEVPEDEMAAITQTARLDLLWPAVYINSYETKGVYVGVDLSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYET--------------AEDEDYDSETFLGPAIITDPF-----------KGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDASEEAPTVCDLGIGICSG-RDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFEPVVGMVDLIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDPAR----GVGG-----GRF-------LDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERTGYPMNPFTS---------GPSALTAXXXXXXXXXXXXXXNAAVPGPMS 1966
MGTTAFIGDKA+ AR SLENQIKRHLT ASEE+AT I FR LQYGVLDVT FALRD RQE DLVL G+EGYPL AHTDLRDTEIATSAEANLQNF+RM+FEVDLSRSTWYYADAESNTVEVPEDEM ITQTARLDLLWP VYINSY+TKGVYVGV+LSTTGRT RYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWY A D + +T L P + + + A ++S +T G+LLGVVGMDVRLEQVQESVE INFL+TGYSILATAD G+VLAA VWD D +E+AP G G G DGD W DL+A+ ENG +K FTS ST GVDEEWILVAAPVEG F TA SGGAGTVTHYILSAVPRNEIFEPVVGM DLI DST+QII+ TAIVAC T+VAVALSVYFLAGSI RPIVKMT AARSI ADGA+TDVFGSV A WG ++D AR G G GRF LDYLLCRGDDEISTLGREFQLMITGLG+RG AAEA GLM++RTGYP NP+ + GPSA AAVPGP S
Sbjct: 1 MGTTAFIGDKAKSEARDSLENQIKRHLTIASEESATAIREWFRNLQYGVLDVTTFALRDARQEKRPSIDTLLPAKGPTFHVIRRREPQDLVLDSGNEGYPLNLAHTDLRDTEIATSAEANLQNFSRMSFEVDLSRSTWYYADAESNTVEVPEDEMTTITQTARLDLLWPTVYINSYDTKGVYVGVELSTTGRTIRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYAVESGLKGPKAIYANLAVDGGVNKKTALTAPRRIAPINCENFEKPVYTQASSKEQGFEADVHKFSNDSDSTRGNLLGVVGMDVRLEQVQESVEGINFLNTGYSILATAD-GIVLAAGVWDRDGTEKAPE----GKGRTLGDSDGDEWVDLLAEIENGGIKRFTSTSTAGVDEEWILVAAPVEGNFATATSGGAGTVTHYILSAVPRNEIFEPVVGMADLIRDSTVQIIVTTAIVACFTMVAVALSVYFLAGSITRPIVKMTSAARSIAADGAKTDVFGSVTATWGARRDSARDSARGCGTDISTPGRFTVNRTACLDYLLCRGDDEISTLGREFQLMITGLGRRGSAAEATGLMDKRTGYPKNPYAAMIVKRPPPTGPSA---------------SGGAAVPGPKS 619
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHX1_9PHAE) HSP 1 Score: 682 bits (1760), Expect = 2.000e-238 Identity = 366/440 (83.18%), Postives = 376/440 (85.45%), Query Frame = 2
Query: 617 YYADAESNTVEVPEDEMAAITQTARLDLLWPAVYINSYETKGVYVGVDLSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPW---YETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAGTVTHYILSAVPRNEIFEPVVGMVDLIWDSTIQ----------------IIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDPARGVGGGRFLDYLLCRGDDEISTLGREFQLMITGLGKRGLAAEAIGLMEERTGYPMNPFTSG 1879
Y ADAESNTVEVPEDEMAAITQTARLDLLWPAVYI SYETKG YVGV+LSTTGRT+RYFPGTDLSGV+GSRFACEYVE DGSIAPCFDPTV PW YETAED DYDSETFL PAIITDPFKG+IDDDWLVALARAVYS LLGVVGMDVRL Q+QESVEAINFLDTGYSILATADEGVVLAAA WDEDAS+EA TVCDL IGI SGRDGDGWTDL ADTENGEVKSFTS S EWILVAAPVEGTFDTAISGGAGTV HYILSAVPRNEIFEPVVGM+ LIWDSTIQ IIIPTAIVACCTLVAVAL+VYFLAGSI RPIVKMTKAARS TADGAE DVFGSVAAD GIKKD RG GG RFLDYLLCRGDDEISTLGREFQLMITGLGKRG AAEAIG+MEE TGYP+ G
Sbjct: 8 YNADAESNTVEVPEDEMAAITQTARLDLLWPAVYITSYETKGAYVGVELSTTGRTYRYFPGTDLSGVKGSRFACEYVEVDGSIAPCFDPTVPPWERWYETAEDPDYDSETFLAPAIITDPFKGSIDDDWLVALARAVYS--------LLGVVGMDVRLGQLQESVEAINFLDTGYSILATADEGVVLAAAEWDEDASQEALTVCDLRIGISSGRDGDGWTDLKADTENGEVKSFTS-SPPTASTEWILVAAPVEGTFDTAISGGAGTVAHYILSAVPRNEIFEPVVGMMGLIWDSTIQEFHVHLLSLFSSLHVQIIIPTAIVACCTLVAVALAVYFLAGSITRPIVKMTKAARSTTADGAEHDVFGSVAADRGIKKDSVRGAGGARFLDYLLCRGDDEISTLGREFQLMITGLGKRGSAAEAIGVMEEHTGYPITLLPRG 438
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: Methyl-accepting (chemotaxis protein (Fragment) n=1 Tax=Marinobacter nauticus TaxID=2743 RepID=A0A3B8WC47_MARNT) HSP 1 Score: 63.5 bits (153), Expect = 9.460e-7 Identity = 36/120 (30.00%), Postives = 58/120 (48.33%), Query Frame = 2
Query: 809 SGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVL 1168
+G E R E + ++ P +DP VRPWY+ A+ LG A TDP+ A D+ +++ + G+ +GV GMD+ L + + + I +TGY+ L + G VL
Sbjct: 100 AGTEDGRMLMRSAEVEATLPPDYDPRVRPWYQKAQR--------LGRASFTDPYLDATSDETIISAMAPIKR------GNYVGVAGMDISLNTIDQMLSTITLAETGYAALIN-NSGTVL 204
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: Chemotaxis (protein n=16 Tax=Bacteria TaxID=2 RepID=A0A2D6VXX4_9GAMM) HSP 1 Score: 63.5 bits (153), Expect = 1.180e-6 Identity = 36/120 (30.00%), Postives = 58/120 (48.33%), Query Frame = 2
Query: 809 SGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVL 1168
+G E R E + ++ P +DP VRPWY+ A+ LG A TDP+ A D+ +++ + G+ +GV GMD+ L + + + I +TGY+ L + G VL
Sbjct: 100 AGTEDGRMLMRSAEVEATLPPDYDPRVRPWYQKAQR--------LGRASFTDPYLDATSDETIISAMAPIKR------GNYVGVAGMDISLNTIDQMLSTITLAETGYAALIN-NSGTVL 204
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: methyl-accepting (chemotaxis protein n=2 Tax=Pseudomonas fluorescens group TaxID=136843 RepID=UPI00158642D9) HSP 1 Score: 62.0 bits (149), Expect = 3.620e-6 Identity = 49/152 (32.24%), Postives = 71/152 (46.71%), Query Frame = 2
Query: 875 FDPTVRPWYETAEDEDYDSETFLGPAII--TDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGVVLAAAVWDEDASEEAPTVCDLGIGICS-GRDGDGWTDLIADTENGEVKSFTSKS 1321
+DP VRPWY+TA P I TD + A DD L+ V SG ++GVVG+DV L Q+ V+ + ++GY +L + V++ A+ DA + DLG + + GDG T + D + V TSKS
Sbjct: 137 YDPRVRPWYKTA---------LASPGTIGRTDAYYWAPDDVTLICTVHTVSD----ASGKVIGVVGLDVSLNQLTALVKQLKLGESGYLMLIEGNGNVLVDAS----DAKHNFKPLADLGPNYAALAKSGDGMTQVEIDGVSYMVNIVTSKS 271
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: Chemotaxis (protein n=1 Tax=Thermococcus peptonophilus TaxID=53952 RepID=A0A142CSQ8_9EURY) HSP 1 Score: 62.0 bits (149), Expect = 3.910e-6 Identity = 84/356 (23.60%), Postives = 156/356 (43.82%), Query Frame = 2
Query: 815 VEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSILATADEGV--------VLAAAVWDEDASEEAPTVCDLGIGICSGRDGDGWTDLIADTENGEVKSFTSKSTDGVDEEWILVAAPVEGTFDTAISGGAG--TVTHYILSAVPRNEIFEPVVGMVDLIWDSTIQIIIPTAIVACCTLVAVALSVYFLAGSIVRPIVKMTKAARSITADGAETDVFGSVAADWGIKKDPARGVGGGRFLDYLLCRGDDEISTL---GREFQLMITGLGKRGLAAEAIGLMEE 1843
V G+ F Y E++ + P +DP VRPWY+ A + GP ++P++ A W++ A VY N G L+GV+G+DV ++++ ++++ + TGY+ + D + ++ V+ E + + +V D+ I SG+D D+ T NG TA++ G Y+ + VP +EI P + +++ +T + + TAI+ VA+ Y L S ++P+V ++ AA+++ A+G ++V + ++ D G + G D + TL + + + G GL+ EA G + E
Sbjct: 131 VNGNMFI--YPEQE--LPPDYDPRVRPWYQKAVQVN-------GPTW-SEPYEDASSGKWVITYAIPVYYN-----GKLVGVIGLDVFIDELTKTIDTVKIGQTGYAYVVGQDGTIYMHPNHDYIMKLNVFKEPSLK---SVADI---IRSGKD----KDVAIYTFNGV----------------------------TAVAAGVKIPNTGWYVFAKVPVSEISAPTLNVIEDTRQATKKSALMTAILILALSVAMIGVAYKLIDSSLKPLVALSVAAQAL-AEGRLSEVREKLKQIQYLEDDEI-----GVLIKAFEAVGKDVVGTLQGIAEKLERLAEGDLSNGLSVEAKGELRE 425
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Match: HAMP (domain-containing protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7RYC4_9CHLR) HSP 1 Score: 60.8 bits (146), Expect = 6.560e-6 Identity = 73/312 (23.40%), Postives = 124/312 (39.74%), Query Frame = 2
Query: 206 LRKQLLLSFLAFATVSLLLALAVVMGTTAFIGDKARVAARVSLENQIKRHLTNASEEAATTIGARFRKLQYGVLDVTAFALRDTRQEDLVLAGGDEGYPLTPAHTDLRDTEIATSAEANLQNFTRMNFEVDLSRSTWYYADAESNTVEVPEDEMAAITQTARLDLLWPAVYINSYETKGVYVGVDLSTTGRTFRYFPGTDLSGVEGSRFACEYVEEDGSIAPCFDPTVRPWYETAEDEDYDSETFLGPAIITDPFKGAIDDDWLVALARAVYSNSGTTSGSLLGVVGMDVRLEQVQESVEAINFLDTGYSIL 1141
+R +LL+ L+ T+S+L + + + +G++A+ + +L Q + +L +E A ++Q V +A R D GG P + + + MN E D+S + + D VE+ E+ + + +A ++L+ P VY + T VY+ T Y+P +L + + P F T RPWY A + + + D A +V A VY T G +GVVG+DV L+ + S+E L +GYS L
Sbjct: 17 IRTRLLILLLSMTTISVLAVGYLGINSVQSMGEQAQRISADALRAQAEEYLRQVTEGDARRNDLILERVQRDAEKVAQYAARVFGNPD-AFVGGAYWRP---------EDHMFVGPDGQF-----MNDETDVS--SIFVPDF----VEIDEELLEVLEMSAHMNLILPPVYDSDPNTVAVYLAAKQEVTC----YYPNINLGAI---------------VPPDFQVTQRPWYVGAAPANNPERRVVWSPVYAD----ATGKGLMVTAAAPVY----TDRGEFVGVVGIDVTLQDISASIEENRLLGSGYSFL 280 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig124.1897.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig124.1897.1 >prot_Ecto-sp9_F_contig124.1897.1 ID=prot_Ecto-sp9_F_contig124.1897.1|Name=mRNA_Ecto-sp9_F_contig124.1897.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=606bp MVFRVVSLCKPCLNQAYPLRKQLLLSFLAFATVSLLLALAVVMGTTAFIGback to top mRNA from alignment at Ecto-sp9_F_contig124:26050..32397+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig124.1897.1 ID=mRNA_Ecto-sp9_F_contig124.1897.1|Name=mRNA_Ecto-sp9_F_contig124.1897.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=6348bp|location=Sequence derived from alignment at Ecto-sp9_F_contig124:26050..32397+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig124:26050..32397+ >mRNA_Ecto-sp9_F_contig124.1897.1 ID=mRNA_Ecto-sp9_F_contig124.1897.1|Name=mRNA_Ecto-sp9_F_contig124.1897.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3636bp|location=Sequence derived from alignment at Ecto-sp9_F_contig124:26050..32397+ (Ectocarpus species9 EcSCA_722f female)back to top |