mRNA_Ecto-sp9_F_contig10146.182.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10146.182.1
Unique NamemRNA_Ecto-sp9_F_contig10146.182.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10146.182.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10146contigEcto-sp9_F_contig10146:739..900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-05_004860.1
Exons1
Model size164
Cds size162
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928209.2727244-CDS-Ecto-sp9_F_contig10146:738..9001622928209.2727244-CDS-Ecto-sp9_F_contig10146:738..900Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10146 739..900 +
1692277795.7047184-CDS-Ecto-sp9_F_contig10146:738..9001692277795.7047184-CDS-Ecto-sp9_F_contig10146:738..900Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10146 739..900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10146.182.1prot_Ecto-sp9_F_contig10146.182.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10146 739..900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10146.182.1

>prot_Ecto-sp9_F_contig10146.182.1 ID=prot_Ecto-sp9_F_contig10146.182.1|Name=mRNA_Ecto-sp9_F_contig10146.182.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=54bp
MVGHGHRPQEAFPFTKPVTCQPCVVSIRCTVQQVHVIIATPRGPVAPRNT
AQGL
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mRNA from alignment at Ecto-sp9_F_contig10146:739..900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10146.182.1 ID=mRNA_Ecto-sp9_F_contig10146.182.1|Name=mRNA_Ecto-sp9_F_contig10146.182.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=162bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10146:739..900+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGGGCACGGCCACAGGCCCCAGGAAGCGTTCCCTTTTACCAAACC
GGTAACTTGCCAACCCTGCGTGGTCTCCATTCGATGTACAGTACAGCAGG
TGCATGTAATCATCGCCACCCCCCGGGGTCCGGTTGCTCCCAGAAATACG
GCACAGGGCTTA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10146:739..900+

>mRNA_Ecto-sp9_F_contig10146.182.1 ID=mRNA_Ecto-sp9_F_contig10146.182.1|Name=mRNA_Ecto-sp9_F_contig10146.182.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10146:739..900+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGGGGCACGGCCACAGGCCCCAGGAAGCGTTCCCTTTTACCAAACC
GGTAACTTGCCAACCCTGCGTGGTCTCCATTCGATGTACAGTACAGCAGG
TGCATGTAATCATCGCCACCCCCCGGGGTCCGGTTGCTCCCAGAAATACG
GCACAGGGCTTAATGGTGGGGCACGGCCACAGGCCCCAGGAAGCGTTCCC
TTTTACCAAACCGGTAACTTGCCAACCCTGCGTGGTCTCCATTCGATGTA
CAGTACAGCAGGTGCATGTAATCATCGCCACCCCCCGGGGTCCGGTTGCT
CCCAGAAATACGGCACAGGGCTTA
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