mRNA_Ecto-sp9_F_contig9943.18009.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9943.18009.1
Unique NamemRNA_Ecto-sp9_F_contig9943.18009.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9943.18009.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNN9_ECTSI)

HSP 1 Score: 380 bits (975), Expect = 2.110e-130
Identity = 261/283 (92.23%), Postives = 264/283 (93.29%), Query Frame = 1 
Query:    1 MRRPRAFTCSKLKAEPLPPPTRKPLGYALTSATTSVQASSSPCKCGKCGESPAAASSXXXXXXXXXXXXXSSRVREATSAGGQGSRTPPLAEALGPSNNGSPATAGRPRFRRLPRNAHLPRRSVFNNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQRKRGSDRGEPRLRRMQGARHRRQRRFLDGLIFIQSSLRPTPPARGRLTKQGSTANGEEIPGTFLARSARPREEAGDVGYTAVAGKSIKWIYLKSD--RAATRDEDLPVFCSTTGW 843
            MRRPRAFTCSKLKAEPLPPPTRKPLGYALT ATTSVQASSSPCKCGKCGESP AAS XXXXXXXXXXXX SSR+REATSAGGQGSR PPLAEALGPSNNGSPATAGRPRFRRLPRNAHLPRRSVFNNP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DQRKRGSDRG   LRRMQGARHRRQRRFLDGL+FIQSSLRPTPPA GRLTKQ STANGEEIPGTFL RSARPREE GDVGYT VAGKSI WIYLK+D  RAATRDEDLPVFCSTT W
Sbjct:    1 MRRPRAFTCSKLKAEPLPPPTRKPLGYALTPATTSVQASSSPCKCGKCGESPTAASXXXXXXXXXXXXXSSSRIREATSAGGQGSRAPPLAEALGPSNNGSPATAGRPRFRRLPRNAHLPRRSVFNNPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DQRKRGSDRG---LRRMQGARHRRQRRFLDGLVFIQSSLRPTPPASGRLTKQASTANGEEIPGTFLTRSARPREETGDVGYT-VAGKSIDWIYLKNDNDRAATRDEDLPVFCSTTRW 278
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BLAST of mRNA_Ecto-sp9_F_contig9943.18009.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ16_9PHAE)

HSP 1 Score: 206 bits (523), Expect = 6.050e-61
Identity = 159/179 (88.83%), Postives = 161/179 (89.94%), Query Frame = 1 
Query:    1 MRRPRAFTCSKLKAEPLPPPTRKPLGYALTSATTSVQASSSPCKCGKCGESPAAASSXXXXXXXXXXXXXSSRVREATSAGGQGSRTPPLAEALGPSNNGSPATAGRPRFRRLPRNAHLPRRSVFNNPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQRKRGSDRGEPR 537
            MRRPRAFTCSKLKAEPLPPPTRKPLGYALTSATTSVQASS PC+CGKCGESPAAASSXXXXXXXXXXXX SSR+REAT AGG GSRTP LAEALGPSNNGSPATAGRPRFRRLPRNAHLPRRSV NNP            XXXXXXXXXXXXXXXXXXXXXXXXXXDQRKRGSDRGEPR
Sbjct:    1 MRRPRAFTCSKLKAEPLPPPTRKPLGYALTSATTSVQASS-PCQCGKCGESPAAASSXXXXXXXXXXXXSSSRIREATFAGGHGSRTPLLAEALGPSNNGSPATAGRPRFRRLPRNAHLPRRSVLNNPPQLPAPPSTSLLXXXXXXXXXXXXXXXXXXXXXXXXXXDQRKRGSDRGEPR 178
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9943.18009.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.110e-13092.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized6.050e-6188.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9943contigEcto-sp9_F_contig9943:142..1920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_006410.1
Exons3
Model size846
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9943.18009.1prot_Ecto-sp9_F_contig9943.18009.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9943 142..1920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.6946926-CDS-Ecto-sp9_F_contig9943:141..2571622931090.6946926-CDS-Ecto-sp9_F_contig9943:141..257Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9943 142..257 +
1692279028.948325-CDS-Ecto-sp9_F_contig9943:141..2571692279028.948325-CDS-Ecto-sp9_F_contig9943:141..257Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9943 142..257 +
1622931090.7220368-CDS-Ecto-sp9_F_contig9943:768..11871622931090.7220368-CDS-Ecto-sp9_F_contig9943:768..1187Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9943 769..1187 +
1692279028.957485-CDS-Ecto-sp9_F_contig9943:768..11871692279028.957485-CDS-Ecto-sp9_F_contig9943:768..1187Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9943 769..1187 +
1622931090.746036-CDS-Ecto-sp9_F_contig9943:1609..19201622931090.746036-CDS-Ecto-sp9_F_contig9943:1609..1920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9943 1610..1920 +
1692279028.968017-CDS-Ecto-sp9_F_contig9943:1609..19201692279028.968017-CDS-Ecto-sp9_F_contig9943:1609..1920Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9943 1610..1920 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9943.18009.1

>prot_Ecto-sp9_F_contig9943.18009.1 ID=prot_Ecto-sp9_F_contig9943.18009.1|Name=mRNA_Ecto-sp9_F_contig9943.18009.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=282bp
MRRPRAFTCSKLKAEPLPPPTRKPLGYALTSATTSVQASSSPCKCGKCGE
SPAAASSSSPASSSSSQSPSSSRVREATSAGGQGSRTPPLAEALGPSNNG
SPATAGRPRFRRLPRNAHLPRRSVFNNPPPLPAPPSTSLLAAGGGELEEQ
GEERAGGLLVPPPPPSDQRKRGSDRGEPRLRRMQGARHRRQRRFLDGLIF
IQSSLRPTPPARGRLTKQGSTANGEEIPGTFLARSARPREEAGDVGYTAV
AGKSIKWIYLKSDRAATRDEDLPVFCSTTGW*
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mRNA from alignment at Ecto-sp9_F_contig9943:142..1920+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9943.18009.1 ID=mRNA_Ecto-sp9_F_contig9943.18009.1|Name=mRNA_Ecto-sp9_F_contig9943.18009.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1779bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9943:142..1920+ (Ectocarpus species9 EcSCA_722f female)
ATGCGACGCCCGCGGGCATTCACGTGCTCAAAGCTCAAGGCTGAGCCCCT
TCCTCCGCCGACCCGCAAGCCGCTGGGCTATGCCCTAACCTCTGCGACGA
CTAGTGTGCAAGCGAGGTGGGTTTTAATTCTTCATTTTAGCTAGATTTGA
GGCGTCCGGTCGGGTTAGATTGATATATGTGCACGCAAAGCTCTTCTTTT
CTGTCCGGTCCCCAAAAGGATCGGTTCTTTCACATGCCTCCTGTCTCTCT
CTGCTCGAGAACACGCAGGAGGGCAGGGGATTGGCTTCCCTCCCCGTGGA
GTACCGTGTGGTCCTGCTGCAGTTCGCTCGGTAGCGTTCAAAGCTCATCC
CCTATGTGCACGGGTTCGTGCCAAAGTCAGCAAGGTCTTGGACGCACGTT
GCCGTTTCACTTTCAGTTCCGATGATGATGTCGATATGCCCCTTTCGCCT
CTCTACACTACACAAGGCCTCTCCTCCCTCCCCACCCCTACCTGTCCCTC
TCCACGGAACTCACGGCGTAACCACTCCACACGACAAGCCCTCTCACCGC
TGCTGCTGCTGCTGCTCAACTTGACTGACGTGCCTTCTATCTTCAACCCT
TTGCTTTTTTTTTCCTCTCCGCCCCAGCAGTTCTCCGTGTAAGTGCGGAA
AGTGCGGGGAATCTCCGGCGGCAGCGTCGTCATCCTCGCCGGCATCATCA
TCATCGTCACAATCCCCCTCGTCCTCCCGTGTCCGCGAGGCCACCTCTGC
CGGGGGACAAGGCTCCCGAACGCCCCCCCTCGCGGAGGCGCTCGGCCCGT
CGAACAACGGCTCCCCGGCCACCGCCGGCAGACCGCGGTTTCGACGGCTA
CCCCGGAATGCCCATCTCCCTCGTCGAAGCGTGTTCAACAACCCGCCGCC
GTTGCCGGCGCCACCGTCGACGTCCCTCCTAGCAGCAGGAGGAGGAGAGC
TGGAAGAACAAGGAGAAGAACGAGCCGGAGGCCTGCTGGTGCCGCCGCCA
CCGCCGTCCGATCAGCGCAAGCGAGGGAGCGACAGAGGCGAGCCTCGTGG
GAGCTTCGCCGCTCCCACTGCCGGCAAGCAGCTCGCTGCTTCTGCTGCCG
CCTCGACACCAACGAAGTCTGTTGCGGCTGGTGCTACTACTGCTGCTGCC
CCTGCGACCGAAGCCGGCGGTTCTACGAGCAGGGCAGCGGGCACCAAGCC
TGCTACTGCTGCTGCTGCTGCTGCGGCTGCTGCTGCCACCCCGGTGGCTG
TGAGCGTCGATGCAGCAGGGGACCAGAAGTCCTTCGCCACCATGTACTGC
GAAGCCGGGGACTCGGTCGCCTCCTTCATCACGCCCGGCGTGACGTATAT
CAAGGTCGACTCGGCCGGAGTCGCCTCCGTGTGCGACGTTAGCATCATAC
AGAACGACGGAAGCGTTAACAGCGGCAGCAGCAGCAACAATGCCGCGGGC
AGCCGTGCTGGCATGAAGGGCTTCGACGAATGCAAGGCGCCCGCCACAGA
CGCCAGCGGCGTTTTCTCGATGGGCTCATCTTCATCCAGAGCAGCCTTCG
GCCGACGCCGCCGGCGCGTGGGCGGCTGACAAAACAAGGATCAACGGCGA
ACGGCGAGGAGATCCCTGGAACTTTCCTGGCGCGAAGCGCGAGACCGCGG
GAGGAGGCTGGTGATGTGGGCTACACCGCCGTGGCTGGTAAATCAATCAA
ATGGATTTATTTGAAGAGCGACCGTGCGGCGACGAGGGATGAAGATCTTC
CGGTGTTTTGTAGCACCACCGGGTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9943:142..1920+

>mRNA_Ecto-sp9_F_contig9943.18009.1 ID=mRNA_Ecto-sp9_F_contig9943.18009.1|Name=mRNA_Ecto-sp9_F_contig9943.18009.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9943:142..1920+ (Ectocarpus species9 EcSCA_722f female)
ATGCGACGCCCGCGGGCATTCACGTGCTCAAAGCTCAAGGCTGAGCCCCT
TCCTCCGCCGACCCGCAAGCCGCTGGGCTATGCCCTAACCTCTGCGACGA
CTAGTGTGCAAGCGAGATGCGACGCCCGCGGGCATTCACGTGCTCAAAGC
TCAAGGCTGAGCCCCTTCCTCCGCCGACCCGCAAGCCGCTGGGCTATGCC
CTAACCTCTGCGACGACTAGTGTGCAAGCGAGCAGTTCTCCGTGTAAGTG
CGGAAAGTGCGGGGAATCTCCGGCGGCAGCGTCGTCATCCTCGCCGGCAT
CATCATCATCGTCACAATCCCCCTCGTCCTCCCGTGTCCGCGAGGCCACC
TCTGCCGGGGGACAAGGCTCCCGAACGCCCCCCCTCGCGGAGGCGCTCGG
CCCGTCGAACAACGGCTCCCCGGCCACCGCCGGCAGACCGCGGTTTCGAC
GGCTACCCCGGAATGCCCATCTCCCTCGTCGAAGCGTGTTCAACAACCCG
CCGCCGTTGCCGGCGCCACCGTCGACGTCCCTCCTAGCAGCAGGAGGAGG
AGAGCTGGAAGAACAAGGAGAAGAACGAGCCGGAGGCCTGCTGGTGCCGC
CGCCACCGCCGTCCGATCAGCGCAAGCGAGGGAGCGACAGAGGCGAGCCT
CCAGTTCTCCGTGTAAGTGCGGAAAGTGCGGGGAATCTCCGGCGGCAGCG
TCGTCATCCTCGCCGGCATCATCATCATCGTCACAATCCCCCTCGTCCTC
CCGTGTCCGCGAGGCCACCTCTGCCGGGGGACAAGGCTCCCGAACGCCCC
CCCTCGCGGAGGCGCTCGGCCCGTCGAACAACGGCTCCCCGGCCACCGCC
GGCAGACCGCGGTTTCGACGGCTACCCCGGAATGCCCATCTCCCTCGTCG
AAGCGTGTTCAACAACCCGCCGCCGTTGCCGGCGCCACCGTCGACGTCCC
TCCTAGCAGCAGGAGGAGGAGAGCTGGAAGAACAAGGAGAAGAACGAGCC
GGAGGCCTGCTGGTGCCGCCGCCACCGCCGTCCGATCAGCGCAAGCGAGG
GAGCGACAGAGGCGAGCCTCGGCTTCGACGAATGCAAGGCGCCCGCCACA
GACGCCAGCGGCGTTTTCTCGATGGGCTCATCTTCATCCAGAGCAGCCTT
CGGCCGACGCCGCCGGCGCGTGGGCGGCTGACAAAACAAGGATCAACGGC
GAACGGCGAGGAGATCCCTGGAACTTTCCTGGCGCGAAGCGCGAGACCGC
GGGAGGAGGCTGGTGATGTGGGCTACACCGCCGTGGCTGGTAAATCAATC
AAATGGATTTATTTGAAGAGCGACCGTGCGGCGACGAGGGATGAAGATCT
TCCGGTGTTTTGTAGCACCACCGGGTGGTGAGGCTTCGACGAATGCAAGG
CGCCCGCCACAGACGCCAGCGGCGTTTTCTCGATGGGCTCATCTTCATCC
AGAGCAGCCTTCGGCCGACGCCGCCGGCGCGTGGGCGGCTGACAAAACAA
GGATCAACGGCGAACGGCGAGGAGATCCCTGGAACTTTCCTGGCGCGAAG
CGCGAGACCGCGGGAGGAGGCTGGTGATGTGGGCTACACCGCCGTGGCTG
GTAAATCAATCAAATGGATTTATTTGAAGAGCGACCGTGCGGCGACGAGG
GATGAAGATCTTCCGGTGTTTTGTAGCACCACCGGGTGGTGA
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