mRNA_Ecto-sp9_F_contig9735.17837.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9735.17837.1
Unique NamemRNA_Ecto-sp9_F_contig9735.17837.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9735.17837.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9735contigEcto-sp9_F_contig9735:1615..3168 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1419
Cds size978
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9735.17837.1prot_Ecto-sp9_F_contig9735.17837.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9735 1615..2592 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.3098502-CDS-Ecto-sp9_F_contig9735:1614..25921622931064.3098502-CDS-Ecto-sp9_F_contig9735:1614..2592Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9735 1615..2592 -
1692279015.8086426-CDS-Ecto-sp9_F_contig9735:1614..25921692279015.8086426-CDS-Ecto-sp9_F_contig9735:1614..2592Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9735 1615..2592 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931064.3287895-UTR-Ecto-sp9_F_contig9735:2592..27671622931064.3287895-UTR-Ecto-sp9_F_contig9735:2592..2767Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9735 2593..2767 -
1692279015.822512-UTR-Ecto-sp9_F_contig9735:2592..27671692279015.822512-UTR-Ecto-sp9_F_contig9735:2592..2767Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9735 2593..2767 -
1622931064.340889-UTR-Ecto-sp9_F_contig9735:2902..31681622931064.340889-UTR-Ecto-sp9_F_contig9735:2902..3168Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9735 2903..3168 -
1692279015.8309019-UTR-Ecto-sp9_F_contig9735:2902..31681692279015.8309019-UTR-Ecto-sp9_F_contig9735:2902..3168Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9735 2903..3168 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9735.17837.1

>prot_Ecto-sp9_F_contig9735.17837.1 ID=prot_Ecto-sp9_F_contig9735.17837.1|Name=mRNA_Ecto-sp9_F_contig9735.17837.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=326bp
MVHYGEQLVKAANNTNTKISAVREDVSVVREDVSVVREDVSKLQEQMNKM
VSDAISSDDGDVFMRHFPLLCDGLSGNCGWVPVLHEVGGRAYKLLVVCLA
YVERYFAQECPVPRSRAETRAYFTTKLPTHDRLPYEHHQSVLVHATPFVS
NSTGKDGGFDCSQATNRDKFVFLKFDAMKQKLDDVFEHMKDVPDSRVIDA
DGRVVSYKMFGQTWKFTEESRRDASTTSIKAFASRVISAENKKGMLAMSC
SWTEENYDQAKVEFFGIPPQWVGKRHVVCGRFDENSPVVKSHEQVYAGKR
KVVMAENRKKAGEANRRKRRRVGDD*
back to top

mRNA from alignment at Ecto-sp9_F_contig9735:1615..3168-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9735.17837.1 ID=mRNA_Ecto-sp9_F_contig9735.17837.1|Name=mRNA_Ecto-sp9_F_contig9735.17837.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1554bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9735:1615..3168- (Ectocarpus species9 EcSCA_722f female)
CTCACACGAGGGCGCGTGAGATATCCGTGCTAGCACATGCGATCTGCCTC
TCCTCCCACTGGGACGGAAAAGGCTTGTCGCTCCTTCCCTTCCTTCCAAA
CCACAAGGCGTTCCCTCTGTACTTGCCCCAGCGCCAGTCAAATGTGCTCT
CTGCTTATCAATGTCTATTTGAAAACTTCACCGAAAAAAGTCTGGTGTCG
CCATGTGCACTTTTGCGCGAGGTCTGGTCCACGGAGCGACGAATGGAGCA
AGCAGCGGAACCAAAGGTAAAGTTTGTACGGGCTGAGTAGGCGATATGAC
GGTCATTTCGTGTTTGCATTTTTCAAGACAGAAGCAGTTTAAAATACATA
CTCTCAAATCAACCTTCTTGTCCTGTCTGATACTGTTGTCGTTTTACGCA
GATTACTGTTTCCCTGAGCCCACTAGTAGCAAGATCTGCGCCCATGGCTG
CGCCAATGGACGAACTTCTTCAACAAATGGTCAAAACGCAGACAGGACTT
GCGGCTAGCCAGGCAGCAGCGGACGTAAAGGGTCACTTTGGTGCAAGAGC
AGGGCTCGAAGTCGCTGGAGAGGGCGATGGTACACTACGGTGAACAACTT
GTCAAGGCCGCAAACAATACCAATACCAAAATCTCTGCGGTTCGCGAAGA
CGTGTCGGTAGTTCGCGAGGACGTGTCGGTAGTTCGCGAGGACGTATCCA
AACTTCAAGAGCAGATGAACAAGATGGTGTCGGACGCAATTTCGAGTGAT
GACGGTGACGTTTTTATGCGTCACTTTCCCCTTCTGTGTGACGGGTTGTC
TGGTAACTGCGGGTGGGTTCCGGTGCTTCACGAAGTAGGTGGTAGGGCAT
ACAAGCTTCTTGTCGTGTGCCTCGCGTACGTAGAGCGCTATTTTGCACAA
GAGTGTCCCGTGCCTCGCAGCAGAGCCGAAACAAGGGCATATTTCACAAC
GAAGTTGCCTACCCACGACCGTCTTCCGTACGAGCACCACCAATCGGTGC
TTGTGCACGCAACACCGTTTGTGTCAAACTCCACTGGCAAGGACGGAGGT
TTTGATTGCAGTCAGGCCACCAACCGGGACAAGTTTGTTTTCCTGAAGTT
TGATGCGATGAAGCAGAAGCTAGACGACGTGTTTGAGCACATGAAAGACG
TACCCGACTCGCGGGTCATTGACGCTGACGGAAGGGTGGTCAGTTACAAG
ATGTTCGGACAGACGTGGAAGTTTACAGAGGAGTCTAGAAGAGACGCGTC
CACAACTTCGATCAAGGCCTTTGCATCTAGAGTGATTTCGGCAGAGAACA
AAAAGGGCATGTTGGCAATGAGTTGCTCTTGGACAGAAGAGAACTACGAC
CAGGCCAAAGTAGAGTTTTTTGGAATTCCTCCGCAATGGGTCGGCAAGAG
GCACGTAGTGTGCGGGAGATTCGACGAGAATTCGCCGGTGGTGAAGAGTC
ACGAACAGGTGTATGCAGGGAAGCGAAAGGTTGTTATGGCTGAAAATCGC
AAGAAGGCAGGGGAGGCCAACAGGAGGAAAAGGAGGAGGGTGGGTGATGA
CTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9735:1615..3168-

>mRNA_Ecto-sp9_F_contig9735.17837.1 ID=mRNA_Ecto-sp9_F_contig9735.17837.1|Name=mRNA_Ecto-sp9_F_contig9735.17837.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1956bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9735:1615..3168- (Ectocarpus species9 EcSCA_722f female)
ATGGTACACTACGGTGAACAACTTGTCAAGGCCGCAAACAATACCAATAC
CAAAATCTCTGCGGTTCGCGAAGACGTGTCGGTAGTTCGCGAGGACGTGT
CGGTAGTTCGCGAGGACGTATCCAAACTTCAAGAGCAGATGAACAAGATG
GTGTCGGACGCAATTTCGAGTGATGACGGTGACGTTTTTATGCGTCACTT
TCCCCTTCTGTGTGACGGGTTGTCTGGTAACTGCGGGTGGGTTCCGGTGC
TTCACGAAGTAGGTGGTAGGGCATACAAGCTTCTTGTCGTGTGCCTCGCG
TACGTAGAGCGCTATTTTGCACAAGAGTGTCCCGTGCCTCGCAGCAGAGC
CGAAACAAGGGCATATTTCACAACGAAGTTGCCTACCCACGACCGTCTTC
CGTACGAGCACCACCAATCGGTGCTTGTGCACGCAACACCGTTTGTGTCA
AACTCCACTGGCAAGGACGGAGGTTTTGATTGCAGTCAGGCCACCAACCG
GGACAAGTTTGTTTTCCTGAAGTTTGATGCGATGAAGCAGAAGCTAGACG
ACGTGTTTGAGCACATGAAAGACGTACCCGACTCGCGGGTCATTGACGCT
GACGGAAGGGTGGTCAGTTACAAGATGTTCGGACAGACGTGGAAGTTTAC
AGAGGAGTCTAGAAGAGACGCGTCCACAACTTCGATCAAGGCCTTTGCAT
CTAGAGTGATTTCGGCAGAGAACAAAAAGGGCATGTTGGCAATGAGTTGC
TCTTGGACAGAAGAGAACTACGACCAGGCCAAAGTAGAGTTTTTTGGAAT
TCCTCCGCAATGGGTCGGCAAGAGGCACGTAGTGTGCGGGAGATTCGACG
AGAATTCGCCGGTGGTGAAGAGTCACGAACAGGTGTATGCAGGGAAGCGA
AAGGTTGTTATGGCTGAAAATCGCAAGAAGGCAGGGGAGGCCAACAGGAG
GAAAAGGAGGAGGGTGGGTGATGACTGAATGGTACACTACGGTGAACAAC
TTGTCAAGGCCGCAAACAATACCAATACCAAAATCTCTGCGGTTCGCGAA
GACGTGTCGGTAGTTCGCGAGGACGTGTCGGTAGTTCGCGAGGACGTATC
CAAACTTCAAGAGCAGATGAACAAGATGGTGTCGGACGCAATTTCGAGTG
ATGACGGTGACGTTTTTATGCGTCACTTTCCCCTTCTGTGTGACGGGTTG
TCTGGTAACTGCGGGTGGGTTCCGGTGCTTCACGAAGTAGGTGGTAGGGC
ATACAAGCTTCTTGTCGTGTGCCTCGCGTACGTAGAGCGCTATTTTGCAC
AAGAGTGTCCCGTGCCTCGCAGCAGAGCCGAAACAAGGGCATATTTCACA
ACGAAGTTGCCTACCCACGACCGTCTTCCGTACGAGCACCACCAATCGGT
GCTTGTGCACGCAACACCGTTTGTGTCAAACTCCACTGGCAAGGACGGAG
GTTTTGATTGCAGTCAGGCCACCAACCGGGACAAGTTTGTTTTCCTGAAG
TTTGATGCGATGAAGCAGAAGCTAGACGACGTGTTTGAGCACATGAAAGA
CGTACCCGACTCGCGGGTCATTGACGCTGACGGAAGGGTGGTCAGTTACA
AGATGTTCGGACAGACGTGGAAGTTTACAGAGGAGTCTAGAAGAGACGCG
TCCACAACTTCGATCAAGGCCTTTGCATCTAGAGTGATTTCGGCAGAGAA
CAAAAAGGGCATGTTGGCAATGAGTTGCTCTTGGACAGAAGAGAACTACG
ACCAGGCCAAAGTAGAGTTTTTTGGAATTCCTCCGCAATGGGTCGGCAAG
AGGCACGTAGTGTGCGGGAGATTCGACGAGAATTCGCCGGTGGTGAAGAG
TCACGAACAGGTGTATGCAGGGAAGCGAAAGGTTGTTATGGCTGAAAATC
GCAAGAAGGCAGGGGAGGCCAACAGGAGGAAAAGGAGGAGGGTGGGTGAT
GACTGA
back to top