mRNA_Ecto-sp9_F_contig971.17816.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig971.17816.1
Unique NamemRNA_Ecto-sp9_F_contig971.17816.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig971.17816.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig971contigEcto-sp9_F_contig971:15579..20050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size380
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig971.17816.1prot_Ecto-sp9_F_contig971.17816.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig971 19352..20015 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.3660262-UTR-Ecto-sp9_F_contig971:15578..156731622931061.3660262-UTR-Ecto-sp9_F_contig971:15578..15673Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig971 15579..15673 +
1692279014.5525396-UTR-Ecto-sp9_F_contig971:15578..156731692279014.5525396-UTR-Ecto-sp9_F_contig971:15578..15673Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig971 15579..15673 +
1622931061.3844478-UTR-Ecto-sp9_F_contig971:19332..193511622931061.3844478-UTR-Ecto-sp9_F_contig971:19332..19351Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig971 19333..19351 +
1692279014.562339-UTR-Ecto-sp9_F_contig971:19332..193511692279014.562339-UTR-Ecto-sp9_F_contig971:19332..19351Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig971 19333..19351 +
1622931061.4295642-UTR-Ecto-sp9_F_contig971:20015..200501622931061.4295642-UTR-Ecto-sp9_F_contig971:20015..20050Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig971 20016..20050 +
1692279014.596839-UTR-Ecto-sp9_F_contig971:20015..200501692279014.596839-UTR-Ecto-sp9_F_contig971:20015..20050Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig971 20016..20050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.4030383-CDS-Ecto-sp9_F_contig971:19351..194401622931061.4030383-CDS-Ecto-sp9_F_contig971:19351..19440Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig971 19352..19440 +
1692279014.5723755-CDS-Ecto-sp9_F_contig971:19351..194401692279014.5723755-CDS-Ecto-sp9_F_contig971:19351..19440Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig971 19352..19440 +
1622931061.4176242-CDS-Ecto-sp9_F_contig971:19873..200151622931061.4176242-CDS-Ecto-sp9_F_contig971:19873..20015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig971 19874..20015 +
1692279014.5821345-CDS-Ecto-sp9_F_contig971:19873..200151692279014.5821345-CDS-Ecto-sp9_F_contig971:19873..20015Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig971 19874..20015 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig971.17816.1

>prot_Ecto-sp9_F_contig971.17816.1 ID=prot_Ecto-sp9_F_contig971.17816.1|Name=mRNA_Ecto-sp9_F_contig971.17816.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=77bp
MKGVEYKTPTENRGKNQSDGPCSTSTTHRRRTEAVEEQLRRWKKSENKKK
TTQNVRMAKRVTERGEVQVGPQTDAD*
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mRNA from alignment at Ecto-sp9_F_contig971:15579..20050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig971.17816.1 ID=mRNA_Ecto-sp9_F_contig971.17816.1|Name=mRNA_Ecto-sp9_F_contig971.17816.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4472bp|location=Sequence derived from alignment at Ecto-sp9_F_contig971:15579..20050+ (Ectocarpus species9 EcSCA_722f female)
CTTGTGCTTCACGTGGTGTCGGATTCGAGCGGCGCGGGTGCGCGTCGAAT
CGGACAAGGCGAAACAACAACTGGAGAGGCTGCGACGAGGACAAGGCGGG
TGGAAAAACGATATCTATAATGTACATGGAGTTCATGGCAATCAGACAGG
CAGCAATAGTGTACTTTCATGGAGGGCAGTAGGTGACCGGCCCGAAGGCA
TTTCAGGAAGCTCACAAGCCTCGCTAAATAGGGGATGCTCTGACTCGCAT
ACAAGATCTTTATTGTTTCTGTCTGGTCCTTCCTGCAACAAATCTCCCCA
CTACTGGTATCGCGTTCGAAGATGTCTGCTGTTCACGGAACAGGAACCCC
CACGCCTGTAGAGGGTTAGCACAAGGATCCGTTCGATTCGTAGGCTAATC
AGCCCCTTGTATCCTGGACCGCAGCATCTACGAATAGAGATGAGTTTGTG
GTGGTTTTTCAAGAAACAGCTGTATACAATCCCCCCCCCCCAGAACGAGG
AAAGGAAGGGTGAAACAGGGTAAAACCATGGTCAAAACGCGACCGAGGGT
TCATCGAACCCATCAGCGTGAACCGATCCCAGCTAATTCCTCCACGCCGA
CGTTCGCCTTGCCGTATCACAGATTACAGAACGCCTGGGGGTATATGCCC
TGCCACTCTTTGACAATGTGTTCATGCTTTCGGAAATATACCTTGACCTG
CGGGCAATAGGATCCTTCCTTTGCCCTACTTTCTCCGCAGGAATCACCTT
CCGTTCCAACAGCCATTATCACGTGACTTCCAGTTCCAAACAAACGATGA
CAACTGACATCCGAGACGTGCTGCATGGTTGAAGGCAGCATGGTTGGTGG
CCACCGTTTGTTTGGGACTGGACGATTCGTGTTCTTGGTTTCCTTCAGTT
GGAGCGGAAAGTGGTTCCTGCGGAGAACATGGCCCACGAAAGGGTCTCAT
TGCCCGTCGAGTCAGGATACACTCCCGAAGTACCATTCCAATGAGCAACC
GACCCAGGTTTCTGTGACACGGCGGGGTAGAACGTGGGCGTCGACGACTC
AGCTAGGCTCATTTCAGGCCGATTTGAAGCATGTATTCTCAGTCGCATTT
GTCCAGGGTATACCGTGCCGTACCGTTTACCCAAACTACTACCACATTGT
CGCAAAACAGCTTTGCGCGAAACCTTTTTATCAGCGCTCCACCAGCTGCC
CACACGTGCGGGATAGAGAGGAGTGTGTGCTGTCCCTCACCCCCCCGAGA
ACTAGATTGACAATGAGGAGAGACCCATCGTTCCAGCGGCTCCACTTGCA
ACACTCTCTCTCGTCCTTCAAACCTCTCTTCATACCAATAATGCTTCAAA
TTGTTTGTTGTGTAGATTATGTTCGACGACAAAGCACGCCGGAGAAAGAA
CTCATATCGGACATCATGGGGGCACGGTGTCTTGTTGATAGGACCTCTTG
ACGTGCCCCTACATGGTGTTGGCTTTGCCATGATGTTCTTTTCTCTCGTA
CAACGGAAGTGCGAAATATGATACATGGCTTGCTGTCTTCGGCGTATGCT
TCCTGGCCTCGCCTTCCCCGGGAGGGTCACGCTTGACACAGGCATTTCAA
CACCCGTGCGTGAGCTCAACCTGAGAGCACATGCTGCCTGTGTTTGGGTG
GGGGTCAGTGACTGGCCGTGCGGCCGAGTCTCGCTGGCTCGATGCAGCTT
AGTTGATATCACGTTTTCATGCGTCCGTTGTTAGCGTGGCGGAACAGGTA
TCCCGAAGACCTTAAGAGGGACTAGGACGAGGATCCGTACGATTCCTAGA
CCGACCAGATTCATGTGGACGAGCCCATGTTCCGCTCGATAAACAAGTGC
TTCGCCGACATGCAACAGTCATTATGATGATTCTACGACTCGTGTTTGTG
CGGTGGTTGATACCCCACCAAATATTTGGAGGACGCCATGCCTTTGCAGC
GAGCGTCTAGTTCCTCATCTATAACCCTGAAAATGCGAGCTCATCGTTAT
TGTACCCTGAGCCATGTACTGATAGAGATGCGCTTGCGTTAACTCTGCAA
GAACGAGGAATGCAGAGGTGAACGACGCAACAGGGTAAACCATGGACGGA
ACGCGACCGAGGATACATAGTTCGAATCAGCGTGAAGTGATCCCAGCTGA
TTCCTCGACGCCAAAGTTCACCCGGCCGTGTCACAAAAAGCCCGGGGTAT
ACCCCGCCGCTATCTGGAAAACTCACTGCTACTCGAAAATGTGTCTTGAC
CTGGCGGAAGTTGAACCTTTCCGATCTCCGATTTCTCCGCAGGAATCACT
TTACGCTCCAAATTAAGGACACCATTTACGCGAGTCTTCCAGTTCGAAAC
AAACGATGACAATCAACATCCGAGACATGCTCCATGGTTAAAGGCAGCAT
GGTTGGTTGCCACCGTTTGTTTGACGCTAGTGTGGAGTCCTTTGATTGGA
GTGGAAAGTGCTTCCTGCGAAGATTATCGCCCACGAAAGGGGCTCATCGC
CCGTCGGGTCAGCGTACATTCTCGAAGTACCATTCCAATGCGCGACCCGG
GTTTCCGTGACTCGACAGGGTTGAACGTGGGCGTCGACGACTCAGCTAGG
GTCGTATCAGGCTGGTTTAAAGCATGTATTCTCAGTCGCGTTTTGTCCAG
GGAATATCGTGCTGTGCCGCCTACCCGAACTATAACATCGTCGCGAAACA
GCTTTGTTCGAAACTCTCCCATCAGCGCTCCACCAGTGTCCACACGTGCG
GGATAGAGATGAGTGTGTGCTGTTCCTCTTCTCCCCTGGAACTCCAATGA
CAATGAGGAGAGATCCATCGTTCCAGCGGCTCCACTTGCAACACTCTCTC
TCGTCCTTCAAACCTCTCTTCATACCTGAGTATTGCAGATTGGTTTGCGT
ACTGTAGAACGTGTTCGACGATAATTCATGCCAGAGAACGAACGCACCTG
TCTGCGCCATGGGTGGGGTCACGGTGAATGCCTTTTATGAAGCTACTGAC
GTGCCCCCTACATGGTGTTTGGTTCTTTCTCTCGTGCAACGGAAGTGCAA
GATGCGATACAAGGCCTGCTGTCTTCGGCGTTTTCTTGCTGACCTCGCCT
TTCCCGGGAGTAGACTGCCCGAATGGTCACACTTGACACAGGCATCGACA
CCTATGCGTGAGCTCAGCCTCAAAACACGTGCTTCCTGCGTGTAGGTGGG
GGTCAGTGACTATGGGGGTGTGGTCTAGCTTGCTCGAATACAGCTTCGTT
GATATCACGTCTTCATGCGTCCGTTGCTAGAGTGCGTGGCGGAACAGGAA
TCCCTCATACCTGTTAGGGACTAGGACGAGGATCCGTACGATTCGTAGGC
CGACCAGATTCGTATGGAGTTCCATGTTCCGTCTCGTCAACAAGATTGTC
GCCGACATGAGTATATATTGGTTATCTCTACATTGCCCGCCCCTTTCTCT
TGAATCCGGGAATCTGACCGACTGCCGGCGCGTCTAGTCGCGTCTTTACA
ATCGTCTGTGTGTATTTTGACGGGTTCCCAACGTCCGCCACGTCGTTTGA
ATTTCCACACGTTCGAACATCGTCGTTTCTAATTTGATGGACGGCACAAC
GTTACCCCCAAGCGGAAGGTTTTCCCTCGCACTTGCCCAGCTCAGCGGTC
GTCTGTTCCCGACCGTTGTCTGTGTTTGACCCCGTTCGATTGTGGCCCCT
CGCTTTTTCCATGTCCGTGTTCCGAATTTGTCTTGGCTCTGTTTTGCCCC
GCAGTCAATATGCATTGAAGCTGATGAAAGGCGTTGAGTACAAAACGCCC
ACGGAGAATCGAGGGAAGAACCAAAGCGATGGCCCATGTTCAACCTCGAC
GACACACAGAAGGTGGACTACTATGTCCATGGCAGAACGTTAACGTCGAT
TATCGTGGTCAACTATCCCGCGCATTTGCTCTGACTGCAAGCTAGCTCGT
GCGTTCGACCATACAGAGAGAGAGCGAGAGCGCGAGAGAAGAGCGAGAGA
GAAGAGCGAGAGAGAAGAGCGAGAGAGAAGAGCGAGAGAGAGCGAGAGAG
AAGAGCGAGAGGGATGAGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGGGGGAGGGAGGGAGAGACAGACAGAGAGACAGAGAGACAGACAG
TAGCAGAGGGAGCGTACACTTGTAACTCGATATGATGATGGGAGAGGAGA
TACTGGATACAGGTCTCAGAAACGTTTCTCAATAGTATGAAACAAACGAC
AACAACAAATTGCTAGCCTACCCCTCCTCTTTGCCCATGGCGCAGAAGGA
CAGAAGCTGTAGAAGAGCAACTACGGCGCTGGAAAAAGAGCGAAAACAAG
AAGAAGACGACCCAAAATGTCCGGATGGCGAAACGGGTAACCGAGAGAGG
GGAAGTGCAAGTAGGCCCGCAAACGGACGCGGACTGAAGCAACACCAGCA
GTATCAATAGCAACAGCAGGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig971:15579..20050+

>mRNA_Ecto-sp9_F_contig971.17816.1 ID=mRNA_Ecto-sp9_F_contig971.17816.1|Name=mRNA_Ecto-sp9_F_contig971.17816.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp9_F_contig971:15579..20050+ (Ectocarpus species9 EcSCA_722f female)
ATGAAAGGCGTTGAGTACAAAACGCCCACGGAGAATCGAGGGAAGAACCA
AAGCGATGGCCCATGTTCAACCTCGACGACACACAGAAGATGAAAGGCGT
TGAGTACAAAACGCCCACGGAGAATCGAGGGAAGAACCAAAGCGATGGCC
CATGTTCAACCTCGACGACACACAGAAGAAGGACAGAAGCTGTAGAAGAG
CAACTACGGCGCTGGAAAAAGAGCGAAAACAAGAAGAAGACGACCCAAAA
TGTCCGGATGGCGAAACGGGTAACCGAGAGAGGGGAAGTGCAAGTAGGCC
CGCAAACGGACGCGGACTGAAAGGACAGAAGCTGTAGAAGAGCAACTACG
GCGCTGGAAAAAGAGCGAAAACAAGAAGAAGACGACCCAAAATGTCCGGA
TGGCGAAACGGGTAACCGAGAGAGGGGAAGTGCAAGTAGGCCCGCAAACG
GACGCGGACTGA
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