mRNA_Ecto-sp9_F_contig9709.17814.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9709.17814.1
Unique NamemRNA_Ecto-sp9_F_contig9709.17814.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFF2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.950e-28
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLV +++ +
Sbjct:    5 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVSDEKEQ 59
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BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RFD8_9EUKA)

HSP 1 Score: 94.4 bits (233), Expect = 7.360e-24
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    6 PAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQ 60
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BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y043_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 8.180e-24
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PARCYRFQKNKPFIKSRYCRGVPDPKIRIY+VG KKA VD FP VVHLV +++ +
Sbjct:   33 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYDVGQKKAGVDYFPCVVHLVSDEKEQ 87
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BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=174 Tax=Oomycota TaxID=4762 RepID=M4BZN7_HYAAE)

HSP 1 Score: 95.9 bits (237), Expect = 2.500e-23
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQ 59
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BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WLK8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.810e-23
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PA+CYRFQ  KPFIKSRYCRGVPDPKIRIY++GNKKASVD FP V HLV +++ +
Sbjct:    5 PAKCYRFQNKKPFIKSRYCRGVPDPKIRIYDIGNKKASVDAFPFVAHLVSDEKEQ 59
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BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D6_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 6.950e-23
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PARCYRFQKNKP+IKSRYCRGVPDPKIRIYE GNK+  VD FP V+HLV +++ +
Sbjct:   33 PARCYRFQKNKPYIKSRYCRGVPDPKIRIYECGNKRMGVDHFPYVIHLVSDEKEQ 87
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BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=4 Tax=Pythium TaxID=4797 RepID=A0A5D6Y3Y7_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.110e-22
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PA+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    5 PAKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDTFPFVAHLVSDEKEQ 59
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal_L16 (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YC85_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 2.670e-22
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PARC RFQKNKP+IKSRYCRGVPDPKIRI++ GNKKASVD FP V HLV +++ +
Sbjct:    5 PARCSRFQKNKPYIKSRYCRGVPDPKIRIFDCGNKKASVDQFPFVAHLVSDEKEQ 59
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: Ribosomal (protein L10 (Fragment) n=345 Tax=Oomycota TaxID=4762 RepID=A0A6G6C483_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 5.770e-22
Identity = 40/54 (74.07%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:    4 ARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            A+CYRFQ  KPFIKSR+CRGVPDPKIRIY+VGNKKASVD FP V HLV +++ +
Sbjct:    1 AKCYRFQNKKPFIKSRFCRGVPDPKIRIYDVGNKKASVDAFPFVAHLVSDEKEQ 54
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Match: 60S (ribosomal protein L10 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7Y2_9CRUS)

HSP 1 Score: 92.0 bits (227), Expect = 1.240e-21
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVREKRAE 165
            PARCYR+QK+KP+IKSRYCRGVPDPKIRIY+VGNK A  D FP+ VHLV +++ +
Sbjct:   13 PARCYRYQKDKPYIKSRYCRGVPDPKIRIYDVGNKSAVADQFPLCVHLVSQEKEQ 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9709.17814.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Ribosomal_L162.950e-2889.09domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Ribosomal_L167.360e-2474.55domain-containing protein (Fragment) n=1 Tax=Spong... [more]
Hypothetical8.180e-2480.00protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Ribosomal_L162.500e-2376.36domain-containing protein n=174 Tax=Oomycota TaxID... [more]
Ribosomal_L165.810e-2374.55domain-containing protein n=1 Tax=Aphanomyces eute... [more]
Hypothetical6.950e-2374.55protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Ribosomal_L161.110e-2274.55domain-containing protein n=4 Tax=Pythium TaxID=47... [more]
Ribosomal_L162.670e-2274.55domain-containing protein n=1 Tax=Aureococcus anop... [more]
Ribosomal5.770e-2274.07protein L10 (Fragment) n=345 Tax=Oomycota TaxID=47... [more]
60S1.240e-2170.91ribosomal protein L10 (Fragment) n=1 Tax=Hirondell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9709contigEcto-sp9_F_contig9709:2665..2829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D8LFF2
Preferred nameRPL10L
KEGG koko:K02866
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000003,GO:0000027,GO:0002181,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009507,GO:0009526,GO:0009536,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009790,GO:0009889,GO:0009941,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0012505,GO:0015934,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019953,GO:0022411,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032501,GO:0032502,GO:0032504,GO:0032984,GO:0032991,GO:0034248,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0036477,GO:0042175,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0043025,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044703,GO:0045182,GO:0048232,GO:0048513,GO:0048568,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060322,GO:0065003,GO:0065007,GO:0070013,GO:0070925,GO:0071214,GO:0071478,GO:0071482,GO:0071493,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097458,GO:0098542,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:0104004,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990403,GO:1990904,GO:2000112
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0197@1,KOG0857@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931061.3163424-CDS-Ecto-sp9_F_contig9709:2664..28291622931061.3163424-CDS-Ecto-sp9_F_contig9709:2664..2829Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9709 2665..2829 +
1692279014.538304-CDS-Ecto-sp9_F_contig9709:2664..28291692279014.538304-CDS-Ecto-sp9_F_contig9709:2664..2829Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9709 2665..2829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9709.17814.1prot_Ecto-sp9_F_contig9709.17814.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9709 2665..2829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9709.17814.1

>prot_Ecto-sp9_F_contig9709.17814.1 ID=prot_Ecto-sp9_F_contig9709.17814.1|Name=mRNA_Ecto-sp9_F_contig9709.17814.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=55bp
PARCYRFQKNKPFIKSRYCRGVPDPKIRIYEVGNKKASVDDFPMVVHLVR
EKRAE
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mRNA from alignment at Ecto-sp9_F_contig9709:2665..2829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9709.17814.1 ID=mRNA_Ecto-sp9_F_contig9709.17814.1|Name=mRNA_Ecto-sp9_F_contig9709.17814.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=165bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9709:2665..2829+ (Ectocarpus species9 EcSCA_722f female)
CCGGCTCGTTGCTACCGCTTCCAGAAGAACAAGCCGTTCATCAAATCGCG
GTACTGCCGCGGTGTGCCTGACCCGAAGATTCGCATCTACGAGGTCGGAA
ACAAGAAGGCGTCGGTCGATGACTTCCCGATGGTGGTCCACTTGGTGAGA
GAGAAGAGAGCCGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9709:2665..2829+

>mRNA_Ecto-sp9_F_contig9709.17814.1 ID=mRNA_Ecto-sp9_F_contig9709.17814.1|Name=mRNA_Ecto-sp9_F_contig9709.17814.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=330bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9709:2665..2829+ (Ectocarpus species9 EcSCA_722f female)
CCGGCTCGTTGCTACCGCTTCCAGAAGAACAAGCCGTTCATCAAATCGCG
GTACTGCCGCGGTGTGCCTGACCCGAAGATTCGCATCTACGAGGTCGGAA
ACAAGAAGGCGTCGGTCGATGACTTCCCGATGGTGGTCCACTTGGTGAGA
GAGAAGAGAGCCGAGCCGGCTCGTTGCTACCGCTTCCAGAAGAACAAGCC
GTTCATCAAATCGCGGTACTGCCGCGGTGTGCCTGACCCGAAGATTCGCA
TCTACGAGGTCGGAAACAAGAAGGCGTCGGTCGATGACTTCCCGATGGTG
GTCCACTTGGTGAGAGAGAAGAGAGCCGAG
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