prot_Ecto-sp9_F_contig9669.17768.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp9_F_contig9669.17768.1
Unique Name	prot_Ecto-sp9_F_contig9669.17768.1
Type	polypeptide
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length	92

Homology

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BLAST of mRNA_Ecto-sp9_F_contig9669.17768.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU63_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.500e-55
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0

Query:    1 MFSLLVGRALEPCRLHGGNAMRVVLGAVRGHKTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLGG 91
            MFSLLVGRA EPCRLHGGN MRVVLGAVRGHKTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLGG
Sbjct:    1 MFSLLVGRAFEPCRLHGGNVMRVVLGAVRGHKTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLGG 91

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BLAST of mRNA_Ecto-sp9_F_contig9669.17768.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQT0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.450e-30
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 0

Query:   34 VSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLGG 91
            VSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLR+LGQTKLILGKQKKKVLWMLGG
Sbjct:   17 VSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRSLGQTKLILGKQKKKVLWMLGG 74

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BLAST of mRNA_Ecto-sp9_F_contig9669.17768.1 vs.
Match: 50S (ribosomal protein L35 n=2 Tax=Firmicutes TaxID=1239 RepID=A0A4V1QUL6_9FIRM)

HSP 1 Score: 50.1 bits (118), Expect = 3.250e-6
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 0

Query:   32 KTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLI 77
            KT S  KKR  +TGSG +KR QSG  H TG KPR R RNL QT  +
Sbjct:    5 KTHSGSKKRFDVTGSGKVKRAQSGKNHKTGDKPRKRKRNLRQTAFV 50

[Close]

BLAST of mRNA_Ecto-sp9_F_contig9669.17768.1 vs.
Match: 50S (ribosomal protein L35 n=2 Tax=Microbacterium TaxID=33882 RepID=A0A367XXF2_9MICO)

HSP 1 Score: 48.5 bits (114), Expect = 1.250e-5
Identity = 29/59 (49.15%), Postives = 35/59 (59.32%), Query Frame = 0

Query:   32 KTVSSVKKRVRITGSGNLKRGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLG 90
            KT S  KKR +ITGSG +K+ QSGMRH    K   R R L Q +L+ G   K V  +LG
Sbjct:    5 KTHSGAKKRFKITGSGKIKKQQSGMRHNLEVKSSRRTRRLNQDQLVSGNDMKTVKKLLG 63

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig9669.17768.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig9669.17768.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
Uncharacterized	1.500e-55	97.80	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Uncharacterized	5.450e-30	98.28	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
50S	3.250e-6	58.70	ribosomal protein L35 n=2 Tax=Firmicutes TaxID=123...	[more]
50S	1.250e-5	49.15	ribosomal protein L35 n=2 Tax=Microbacterium TaxID...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 32..89 e-value: 3.0E-14 score: 53.3
IPR021137	Ribosomal protein L35	PANTHER	PTHR33343	FAMILY NOT NAMED	coord: 31..90
None	No IPR available	GENE3D	2.40.50.530		coord: 32..89 e-value: 3.6E-12 score: 48.7
None	No IPR available	PANTHER	PTHR33343:SF1	50S RIBOSOMAL PROTEIN L35	coord: 31..90
IPR018265	Ribosomal protein L35, conserved site	PROSITE	PS00936	RIBOSOMAL_L35	coord: 32..58
IPR037229	Ribosomal protein L35 superfamily	SUPERFAMILY	143034	L35p-like	coord: 32..89

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig9669	contig	Ecto-sp9_F_contig9669:596..2791 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female	2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig9669.17768.1	mRNA_Ecto-sp9_F_contig9669.17768.1	Ectocarpus species9 EcSCA_722f female	mRNA	Ecto-sp9_F_contig9669 2..2898 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp9_F_contig9669.17768.1 ID=prot_Ecto-sp9_F_contig9669.17768.1|Name=mRNA_Ecto-sp9_F_contig9669.17768.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=92bp
MFSLLVGRALEPCRLHGGNAMRVVLGAVRGHKTVSSVKKRVRITGSGNLK
RGQSGMRHITGPKPRSRLRNLGQTKLILGKQKKKVLWMLGG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR021137	Ribosomal_L35
IPR018265	Ribosomal_L35_CS
IPR037229	Ribosomal_L35_sf