mRNA_Ecto-sp9_F_contig9640.17751.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9640.17751.1
Unique NamemRNA_Ecto-sp9_F_contig9640.17751.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM4_9PHAE)

HSP 1 Score: 494 bits (1273), Expect = 5.390e-175
Identity = 242/246 (98.37%), Postives = 245/246 (99.59%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +FVKGNICSSDMVTYVLREE IDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTG+NKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDK+TEFGDDRVFNDLRYTINSDKLAALGWKE
Sbjct:   77 KFVKGNICSSDMVTYVLREENIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGSNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKVTEFGDDRVFNDLRYTINSDKLAALGWKE 322          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB01_ECTSI)

HSP 1 Score: 495 bits (1274), Expect = 6.040e-175
Identity = 243/246 (98.78%), Postives = 245/246 (99.59%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +FVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTG+NKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDK TEFGDDRVFNDLRYTINSDKLAALGWKE
Sbjct:   77 KFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGSNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKATEFGDDRVFNDLRYTINSDKLAALGWKE 322          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Dtdp-glucose (4,6-dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V8_9STRA)

HSP 1 Score: 383 bits (984), Expect = 1.830e-130
Identity = 193/278 (69.42%), Postives = 219/278 (78.78%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIF-------------------------------ELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +FVKGNICSSDMVTYVLREEK+DTI+HFAAQTHVDNSFGNSF FT NNI GTHVLLESAK +G ++RF+HVSTDEVYGEGEH++EPMFED+VLEPTNPYAATKAGAEFIAKAY+RSF LP+IITRGNNVYGPHQYPEK+IPKFINQL+RG+ LT+HG G N RNFL+V DVA AF+ ILH G  G IYNIGG+NEHSVLKVA+DL+ IF                               E P  D   +T F +DR FNDLRYT+NSDKL +LGW+E
Sbjct:   83 KFVKGNICSSDMVTYVLREEKVDTIIHFAAQTHVDNSFGNSFTFTHNNIMGTHVLLESAKTLGTVRRFIHVSTDEVYGEGEHNEEPMFEDHVLEPTNPYAATKAGAEFIAKAYYRSFKLPIIITRGNNVYGPHQYPEKMIPKFINQLLRGRPLTVHGDGRNTRNFLYVQDVARAFDVILHKGEVGRIYNIGGSNEHSVLKVAKDLLAIFGEDATKLNAPDAAAAAXXXXXXXXXXXEANGESPPTDTKAMT-FVEDRAFNDLRYTVNSDKLKSLGWRE 359          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Rhamnose (biosynthetic enzyme expressed n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPP3_9STRA)

HSP 1 Score: 373 bits (958), Expect = 1.420e-126
Identity = 182/246 (73.98%), Postives = 209/246 (84.96%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +FVKGNICSSD+V YVL EE+IDTI+HFAAQTHVDNSFGNSF FTQNNI GTHVLLESAK   IKRF+HVSTDEVYGEG  DQEPMFED VLEPTNPYAATKAGAEFIAK+Y RSFNLP+IITRGNNVYGPHQYPEKLIPKF+N LMR + +T+HG G N RNFL+V DVA AFE ILH GV G IYNIGGT+E + ++VA+DL+R+     E+ +K+ +F +DR FNDLRYT+NS+ L  LGW+E
Sbjct:  117 KFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYVEDVARAFEVILHRGVTGKIYNIGGTHEKANIEVAKDLIRLMGHGKEE-EKMLQFVEDRAFNDLRYTVNSEALKQLGWRE 361          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKW6_9STRA)

HSP 1 Score: 358 bits (919), Expect = 4.070e-121
Identity = 180/246 (73.17%), Postives = 204/246 (82.93%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +FVKGNICS+DMV YVL EEKIDTI+HFAAQTHVDNSFGNSFQFTQNNI+GTHVLLESAK  GIKRF+HVSTDEVYGEG   ++PM E++VLEPTNPYAATKAGAEF+ K+Y RSF+LPVIITRGNNVYGPHQYPEK+IPKFINQL RG+ +T+HGTG N RNFL+V DVA AFE IL  G  G IYNIGGTNE S + VA+ L+    + S+  + +  F  DRVFNDLRYTIN  KLA LGW E
Sbjct:   68 KFVKGNICSADMVNYVLTEEKIDTIIHFAAQTHVDNSFGNSFQFTQNNIFGTHVLLESAKIHGIKRFIHVSTDEVYGEGGETEDPMKEEHVLEPTNPYAATKAGAEFLVKSYHRSFDLPVIITRGNNVYGPHQYPEKIIPKFINQLQRGRAVTLHGTGQNTRNFLYVEDVARAFEVILFKGQVGQIYNIGGTNEISNVDVAKMLIDYMGM-SDRTEALMTFVPDRVFNDLRYTINCAKLAELGWVE 312          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZP8_9STRA)

HSP 1 Score: 355 bits (911), Expect = 4.950e-120
Identity = 173/246 (70.33%), Postives = 202/246 (82.11%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +F+KGNICSSD++ +VL  EKIDTILHFAAQTHVDNSFGNSFQFTQNNI GTHVLLESAK   IKRF+HVSTDEVYGE   +Q+ M E+ VLEPTNPYAATKAGAEF+ K+Y RSF LPVIITRGNNVYGPHQYPEK++PKFINQLMRG+K+T+HG G NKRNFL+V DVA AFE IL  G+ G IYNIGG+ E + + VAR L+++    +ED  ++  F +DR+FND RY INS KL  LGWKE
Sbjct:   76 KFIKGNICSSDLINFVLSSEKIDTILHFAAQTHVDNSFGNSFQFTQNNIMGTHVLLESAKLANIKRFIHVSTDEVYGEQLPNQDAMLEEQVLEPTNPYAATKAGAEFLVKSYHRSFGLPVIITRGNNVYGPHQYPEKMVPKFINQLMRGRKVTLHGNGMNKRNFLYVEDVARAFEIILFKGIVGMIYNIGGSYERTNIDVARSLIKLAGFSNED--EMMTFVEDRIFNDFRYHINSSKLIELGWKE 319          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV33_9STRA)

HSP 1 Score: 353 bits (907), Expect = 2.070e-119
Identity = 175/248 (70.56%), Postives = 200/248 (80.65%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFVHVSTDEVYGEG-EHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +FVKG+I S+D+V YVLRE  IDT++HFAAQTHVDNSFGNSFQFT NNI GTHVLLE AK  G I RF+HVSTDEVYGEG + D +PMFED VLEPTNPYAATKAGAEF+AK+Y RSFN+P+IITRGNNVYGPHQYPEKLIPKF NQLMRG+ +T+HG G N RNFLHV DVA AF  ILH G  G +YN+GG NE SV +VA +L+ I   P +D + +  +  DR FNDLRYTINSDKL  LGW E
Sbjct:   69 KFVKGDILSADIVNYVLRENAIDTVMHFAAQTHVDNSFGNSFQFTSNNIMGTHVLLECAKNCGSITRFIHVSTDEVYGEGKDFDAKPMFEDEVLEPTNPYAATKAGAEFMAKSYHRSFNMPIIITRGNNVYGPHQYPEKLIPKFANQLMRGRAVTVHGDGRNTRNFLHVTDVADAFITILHKGSVGEVYNVGGNNERSVKEVAEELIAIL-CPGQDKETLISYVPDRFFNDLRYTINSDKLIELGWTE 315          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3X2_AURAN)

HSP 1 Score: 351 bits (901), Expect = 7.060e-119
Identity = 173/247 (70.04%), Postives = 203/247 (82.19%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEH-DQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +FVKG+ICS+D+V +VL  E++DTI+HFAAQTHVDNSFGNSFQFT+NNI GTHVLLE+AK   IKRFVHVSTDEVYGEGE+ + EPM ED+VLEPTNPYAATKA AEF+ K+Y RSF LP+IITRGNNVYGPHQ+PEKLIPKF+NQL RG+ +T+HGTG N RNFL+V DVA AF+ ILH    G IYNIGG NE S L VA++L+RI  L   +   IT F  DR FNDLRYTI++ +LA LGWKE
Sbjct:   50 KFVKGDICSADLVNFVLETEEVDTIMHFAAQTHVDNSFGNSFQFTRNNIMGTHVLLEAAKVHSIKRFVHVSTDEVYGEGENMETEPMIEDHVLEPTNPYAATKAAAEFLVKSYHRSFQLPIIITRGNNVYGPHQFPEKLIPKFVNQLARGRPVTLHGTGANTRNFLYVEDVARAFDCILHKAAVGKIYNIGGCNERSNLSVAKELIRIMGLSDNESSLIT-FVPDRAFNDLRYTIDNSELAKLGWKE 295          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRE1_9STRA)

HSP 1 Score: 352 bits (903), Expect = 2.830e-118
Identity = 176/245 (71.84%), Postives = 197/245 (80.41%), Query Frame = 1
Query:    4 FVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            FVKGNICS D+V YVL    IDTI+HFAAQ+HVDNSFGNSFQFTQNNIYGTHVLLESAK  GI+RF+HVSTDEVYGEG   Q+PM E+ VLEPTNPYAATKA AEFI K+Y RSFNLPVIITRGNNVYGPHQYPEKLIPKF NQL+RG+ +T+HG G N RNFL V DVA AFE IL  G  G IYNIGG+NE S L+VA+ L+        +G+ I+ +  DR FNDLRYTINS KL +LGWKE
Sbjct:  100 FVKGNICSPDLVNYVLEAHSIDTIMHFAAQSHVDNSFGNSFQFTQNNIYGTHVLLESAKIYGIERFIHVSTDEVYGEGSDGQDPMTEEQVLEPTNPYAATKAAAEFIVKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFTNQLLRGRAVTLHGDGQNTRNFLFVTDVARAFEAILFKGAIGQIYNIGGSNEISNLEVAKSLIAHLGCSDREGELIS-YVPDRCFNDLRYTINSAKLHSLGWKE 343          
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Putative (dTDP-glucose 4,6-dehydratase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCB2_9STRA)

HSP 1 Score: 347 bits (891), Expect = 5.200e-117
Identity = 173/248 (69.76%), Postives = 203/248 (81.85%), Query Frame = 1
Query:    1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFVHVSTDEVYGEGEH-DQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
            +F+KG+I ++D+VTY L EE IDTI+HFAAQTHVDNSFGNS  FTQ+NIYGTHVLLE AK    IKRF+HVSTDEVYGEGE  + +PM E+++LEPTNPYAATKAGAEF+ K+YFRSF LP +ITRGNNVYGPHQ+PEKLIPKF NQLM GKKLT+HG GTN RNFL+V DVA AFE ILH G+ G +YNIGG NE S +KVA+ L++IF L  ++ + IT +  DR FNDLRYTINS KL  LGW E
Sbjct:   65 KFIKGDIATADLVTYALLEENIDTIMHFAAQTHVDNSFGNSLAFTQSNIYGTHVLLECAKNCPTIKRFIHVSTDEVYGEGEDFETDPMTEEHILEPTNPYAATKAGAEFLVKSYFRSFKLPCLITRGNNVYGPHQFPEKLIPKFTNQLMSGKKLTLHGDGTNTRNFLYVTDVAAAFETILHKGLPGHVYNIGGDNEVSNVKVAKTLLKIFGLEDKEDEYIT-YVPDRQFNDLRYTINSSKLHELGWTE 311          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
NAD(P)-bd_dom5.390e-17598.37domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
NAD(P)-bd_dom6.040e-17598.78domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Dtdp-glucose1.830e-13069.424,6-dehydratase n=1 Tax=Tribonema minus TaxID=3033... [more]
Rhamnose1.420e-12673.98biosynthetic enzyme expressed n=3 Tax=Monodopsidac... [more]
Hypothetical4.070e-12173.17protein n=1 Tax=Florenciella parvula TaxID=236787 ... [more]
Hypothetical4.950e-12070.33protein n=1 Tax=Chromulina nebulosa TaxID=96789 Re... [more]
Hypothetical2.070e-11970.56protein n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
NAD(P)-bd_dom7.060e-11970.04domain-containing protein (Fragment) n=1 Tax=Aureo... [more]
Hypothetical2.830e-11871.84protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Putative5.200e-11769.76dTDP-glucose 4,6-dehydratase n=1 Tax=Fragilariopsi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9640contigEcto-sp9_F_contig9640:113..4057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score498.0
Seed ortholog evalue2.4e-138
Seed eggNOG ortholog2880.D8LB01
Preferred nameGAL102
KEGG rclassRC00402
KEGG koko:K01710,ko:K12450
KEGG ReactionR00293,R06513
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01130,map00520,map00521,map00523,map00525,map01055,map01130
KEGG ModuleM00793
GOsGO:0003674,GO:0003824,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008460,GO:0009225,GO:0009987,GO:0016829,GO:0016835,GO:0016836,GO:0034641,GO:0044237,GO:0044238,GO:0044281,GO:0046483,GO:0055086,GO:0071704,GO:1901135,GO:1901360
EggNOG free text desc.dTDP-glucose 4,6-dehydratase activity
EggNOG OGsCOG1088@1,KOG0747@2759
EC4.2.1.46,4.2.1.76
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiondTDP-glucose 4,6-dehydratase
Ec32 orthologEc-27_005770.1
Exons5
Model size738
Cds size738
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9640.17751.1prot_Ecto-sp9_F_contig9640.17751.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9640 113..4057 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931052.4301276-CDS-Ecto-sp9_F_contig9640:112..2331622931052.4301276-CDS-Ecto-sp9_F_contig9640:112..233Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 113..233 -
1692279010.455552-CDS-Ecto-sp9_F_contig9640:112..2331692279010.455552-CDS-Ecto-sp9_F_contig9640:112..233Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 113..233 -
1622931052.4450727-CDS-Ecto-sp9_F_contig9640:533..6741622931052.4450727-CDS-Ecto-sp9_F_contig9640:533..674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 534..674 -
1692279010.4722078-CDS-Ecto-sp9_F_contig9640:533..6741692279010.4722078-CDS-Ecto-sp9_F_contig9640:533..674Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 534..674 -
1622931052.461999-CDS-Ecto-sp9_F_contig9640:1276..14111622931052.461999-CDS-Ecto-sp9_F_contig9640:1276..1411Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 1277..1411 -
1692279010.483874-CDS-Ecto-sp9_F_contig9640:1276..14111692279010.483874-CDS-Ecto-sp9_F_contig9640:1276..1411Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 1277..1411 -
1622931052.4944127-CDS-Ecto-sp9_F_contig9640:2402..25601622931052.4944127-CDS-Ecto-sp9_F_contig9640:2402..2560Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 2403..2560 -
1692279010.4948688-CDS-Ecto-sp9_F_contig9640:2402..25601692279010.4948688-CDS-Ecto-sp9_F_contig9640:2402..2560Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 2403..2560 -
1622931052.5132585-CDS-Ecto-sp9_F_contig9640:3874..40571622931052.5132585-CDS-Ecto-sp9_F_contig9640:3874..4057Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 3875..4057 -
1692279010.506868-CDS-Ecto-sp9_F_contig9640:3874..40571692279010.506868-CDS-Ecto-sp9_F_contig9640:3874..4057Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9640 3875..4057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9640.17751.1

>prot_Ecto-sp9_F_contig9640.17751.1 ID=prot_Ecto-sp9_F_contig9640.17751.1|Name=mRNA_Ecto-sp9_F_contig9640.17751.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=246bp
QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIY
GTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAA
TKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGK
KLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKV
ARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE
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mRNA from alignment at Ecto-sp9_F_contig9640:113..4057-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9640.17751.1 ID=mRNA_Ecto-sp9_F_contig9640.17751.1|Name=mRNA_Ecto-sp9_F_contig9640.17751.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3945bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9640:113..4057- (Ectocarpus species9 EcSCA_722f female)
CAGTTCGTGAAGGGGAACATCTGCTCGTCGGACATGGTCACGTACGTCCT GCGGGAAGAGAAGATCGACACGATCCTGCACTTCGCGGCGCAGACCCACG TGGACAACTCCTTCGGGAACTCCTTCCAGTTCACCCAGAACAACATCTAC GGCACGCACGTCCTCCTCGAGAGCGCCAAGAAGGTTGGTTTGGTTTCCAC CGCCGTTCTCGATGCCTTGCTTCGTCCTCATATGCCCTGCCAAAAACCAG GAAAATAATCATCAACACCACCCAATACCGTCATACTTCCTAAAAGAGCA ACAAACACGTTTTTCTGCCGTGGACCCACGAGGCGTTCGGCGTGGCCGGT GGGATTTTTTGTGCCTGGTGTCGACATGCACGGGTAGGTGCCTCGTCCGC AGTAGCAGAACCGACCGCTCTCTTATTCTGTGATGAAGAAGCCCCCACTC ACGGCGTCGAGAGGCGAATTTTAGGATTTGCGTGCAACACGAAGTTTCTG CACGCTTGTGCAATGCGGCGCCAACACCGCGTGGAGCGCATCCGGCAGGT GTCCGGCAAATTCCTCATCAGAGTGCCACGGTTTTCTCGCAGCCCTGCAG CTGGTAGCGGCACAGAGAAAGAGTGAAAGCACAAAACCTACGTACAGGGT TTCCCATTGACGCGTGGATGCGCCCCTCTCTTTCTGCGCGCTCGAGTGTT GGAGGACTCCTCGTTTGCGGGGATCTCTCATCGAGACTCCGGTTCCTAAC CTGTCTGTGTGCCCCCCTGAGGGGAATAAACGTCTTTGGCAACCGAGGCC CTGTTTGTTTGTGTGCTTGTCGCCATTTCTCGTCACTCGTGAACTTCGCC TTGTCTTTTTTTGTCCGTGCCGAGCCTGGTCTTTCATCGCTAAAAACATA GAGCGGTTCATCCTCATCTGTCTCTTGTTAACTGATGGAGTTACGTAGAG TTTTTTTTTGTTTTTTCAGTGTCGACATTATCCAAAGCACCTATTCCTAC AAACACTTGTTCCGGCGTAACCACATCATCGAGCTGCCCCTGCACACAAC CACAGATGTCGTGTTGGTGGAGCGTTGTGCGTGTCGGCTTTTTTTGTCTT AACAAACCCACATTCTTGCAGTCGGCTTTTTTCTTAACAAAACCCACGAT CTTGGTAGACACCTTTAGTCTTGACATAACCCACATTCTTGCAATCGGCT TTTTGTCTTAACACAACAAACGATCTTGGTAGACACCTTTAGTCTTAACA TAACCCACATTCTTGCAGTCGGCTTTTCTCTTAACAAAACCCACGGTCTT GGTAGACACCTTTAGTCTTAACATAACCCACATTCTTGCAATCGGCTTTT TGTCTCAACACAACAAACGATCTTGGTAGTCACCTTTGCACAACCCACCG TCTTGGTAGTCGGCTTTTGTCTTAACGTAACCCATCTCCTTGTATCTGCC GAAAACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGGTG GGCATCAAGCGATTCGTGCACGTGTCCACCGATGAGGTCTACGGTGAAGG CGAGCACGACCAGGAGCCCATGTTCGAGGACAACGTACTAGAGCCCACTA ACCCTTACGCCGCCACCAAGGCCGGGGCGGAGTTCATCGCGAAGGCGTAC TTCAGGTGACAAGAAACGAGCGCCCTCCCCGCGGGCGGGGGGTGTTGTAC TCATGAAAAACGGGTGCCGTAGACGGTAGACCATTGAACCGCGCATCCCT ACAATGCCGGGGCGGAACGACATACCATGTGTGGCGGGGGTTGTACTCAT GAAAAACGCCGCGTGCGGTAGACGGTAGACCATTGAACCTCGCATCCCTA CAATGCCGGGACGGAACGAGAATGCCGTGTGTTCGCCGGCCCAGGCTGCG TTTCAAAATGATGAACCAGAAGCTGGCCATCATTCTTGCGTTTATTTTTG TGGGGGGGGCACTGGTGGTCATGTTTGTTTTTTTGGTCGTGTCACATGTA GGCCTCGCATGCCGCCGGGGCAGAGGACGTGGACGGGGGTGGGGGTGGGG AGAAAAGGAGCGACCATGGCGTGAAGCGAAGCTTTGGGTGTACTGGGGGG ACAGAATATTCCGTCTGACATCGGTGGTTTGCGTGTGCCCGCCCTGCCGT TTTTCTCGTCTGAACGGCTTCATATCTCAACGGCTTGTTCATCTCAACTT TGACCGCGAAAACGCCCGCCGGAGCAGAGAGCGCGCTCGTTTCCCCGACG GCCACAGAAACACGACACCGACGGGGAAGAGAAAAAAACATGTCGTTCGA GGCAGGCAGAACGTTGTTCCTCTTCCCGGCGGAGAAAATAATCTACTCTG CAAAACGGTCCTGCGATACATGTAGAGTTGTTTCCCTCCCGCTGGACACC TGTTTCGCCACCCTCTTGTCTTATTTGTTAGGACAAGAAAAAATACGTCG TGTGGTCTACCGGCTCGCTCTTTTTGACCCTAAGGAGGATGCGGTGGTTT CACATGGGGTTGTGAACTGGAAGCTTTAATTTCTTCCACCTTCTACCCGC TGTTTAGTATTGCTTGAGCCTCTTTGTGCCACCGGTAGTAACTGCCCGCT TCTGACTTTTTGTTTTTAATGTGTACGTGTGCGTCAAATATTCAAGGTCG TTCAACTTGCCGGTGATCATCACGCGAGGGAACAACGTGTACGGACCGCA CCAGTACCCTGAGAAGCTCATCCCCAAGTTCATCAACCAGCTCATGAGGG GCAAGAAGCTCACCATCCACGGCACAGGTACGTTTTTTCGTTTTTTTCGT TTTTTTTTGTTGATTGTTTTTCACTTTGGTCTACCTTGGTTTCATCTATG AACAACACCATGTTCCGTTTAGACTCAGACTTGCGGAATGGGGGGTACGA TGTGTTTGGTTATCGCCCGCTACCGTCCCAATAGTTTTCCTCGACAAGCT TACGGGGCGGCATCGGGGGCAAGCGTGGCCGTGGATGCTGGCCGCGTGAA CAAGCGGTCTCCGCCAAGAACACGTGATTGTCGTTGTCTGCATTGTGTCT TTCAAAGCATGCACGTTTTGCTTCTGCGTACCCCCCACAATGACACACTG CTGTTGTCTCCCCATTATTGTGTATGTACCACGGCTTCGAAAGTACTTAC TTTGTTTTCTGCGCGCACCCCAACGGAGACACTGCCGTTTCACCAAATCA TGTGTGCATATGTACCATTGCTTCTGCGTACCTCCCACAATGACACTGCT GTTTTCCTAAATTATAGGAGTATGTACCAGGGGTTCGTAAATTTGCGAAT ATTTTACTTTCTGCGCGCCCCCCTAACAGAGAGAGACACTGCCGTTTTGC CAAATTATGTGTGCATGCTGCTGTGCCAGGGAGCAACAAGCGGAACTTTC TCCACGTTGCCGACGTCGCGACGGCCTTCGAGAAGATCCTTCACGCGGGG GTGGAGGGAAGCATCTACAACATAGGGGGCACGAACGAGCACTCGGTCTT GAAAGTCGCCAGGGACCTCATGAGGTGTGCGCGTGTGTGTTTTATGTTCG TCCCATCTCTTCTGGCGCCAATCAACACGCCTTTCGCTGTATATATCTGA CGTGTATGCATATGAGGGAACCACTCTTTTTGATACACGCTGGCTTCCTA CTCTTGCGTCGATCTCGTCGCTCGCAGGTATCTGTCTCCCCGACTCGAAC GATATTTTGATGCTTTTCAGGTTCAGAGTGGTGCGTAGATATCACGGCGC GGGGCGATGCGGATTGTCGTCGAATCTCGCTGCTCGTGGTGGTGTTGACC CCTTCTTTTTTTTTTCGACGGCAGGATCTTCGAACTGCCTTCGGAAGATG GGGACAAGATCACCGAGTTTGGGGATGACAGGGTTTTCAACGACCTGCGG TACACGATCAACAGCGACAAACTCGCCGCGCTGGGGTGGAAAGAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9640:113..4057-

>mRNA_Ecto-sp9_F_contig9640.17751.1 ID=mRNA_Ecto-sp9_F_contig9640.17751.1|Name=mRNA_Ecto-sp9_F_contig9640.17751.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1476bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9640:113..4057- (Ectocarpus species9 EcSCA_722f female)
CAGTTCGTGAAGGGGAACATCTGCTCGTCGGACATGGTCACGTACGTCCT
GCGGGAAGAGAAGATCGACACGATCCTGCACTTCGCGGCGCAGACCCACG
TGGACAACTCCTTCGGGAACTCCTTCCAGTTCACCCAGAACAACATCTAC
GGCACGCACGTCCTCCTCGAGAGCGCCAAGAAGCAGTTCGTGAAGGGGAA
CATCTGCTCGTCGGACATGGTCACGTACGTCCTGCGGGAAGAGAAGATCG
ACACGATCCTGCACTTCGCGGCGCAGACCCACGTGGACAACTCCTTCGGG
AACTCCTTCCAGTTCACCCAGAACAACATCTACGGCACGCACGTCCTCCT
CGAGAGCGCCAAGAAGGTGGGCATCAAGCGATTCGTGCACGTGTCCACCG
ATGAGGTCTACGGTGAAGGCGAGCACGACCAGGAGCCCATGTTCGAGGAC
AACGTACTAGAGCCCACTAACCCTTACGCCGCCACCAAGGCCGGGGCGGA
GTTCATCGCGAAGGCGTACTTCAGGTGGGCATCAAGCGATTCGTGCACGT
GTCCACCGATGAGGTCTACGGTGAAGGCGAGCACGACCAGGAGCCCATGT
TCGAGGACAACGTACTAGAGCCCACTAACCCTTACGCCGCCACCAAGGCC
GGGGCGGAGTTCATCGCGAAGGCGTACTTCAGGTCGTTCAACTTGCCGGT
GATCATCACGCGAGGGAACAACGTGTACGGACCGCACCAGTACCCTGAGA
AGCTCATCCCCAAGTTCATCAACCAGCTCATGAGGGGCAAGAAGCTCACC
ATCCACGGCACAGGTACGTCGTTCAACTTGCCGGTGATCATCACGCGAGG
GAACAACGTGTACGGACCGCACCAGTACCCTGAGAAGCTCATCCCCAAGT
TCATCAACCAGCTCATGAGGGGCAAGAAGCTCACCATCCACGGCACAGGT
ACCAACAAGCGGAACTTTCTCCACGTTGCCGACGTCGCGACGGCCTTCGA
GAAGATCCTTCACGCGGGGGTGGAGGGAAGCATCTACAACATAGGGGGCA
CGAACGAGCACTCGGTCTTGAAAGTCGCCAGGGACCTCATGAGCAACAAG
CGGAACTTTCTCCACGTTGCCGACGTCGCGACGGCCTTCGAGAAGATCCT
TCACGCGGGGGTGGAGGGAAGCATCTACAACATAGGGGGCACGAACGAGC
ACTCGGTCTTGAAAGTCGCCAGGGACCTCATGAGGATCTTCGAACTGCCT
TCGGAAGATGGGGACAAGATCACCGAGTTTGGGGATGACAGGGTTTTCAA
CGACCTGCGGTACACGATCAACAGCGACAAACTCGCCGCGCTGGGGTGGA
AAGAGGATCTTCGAACTGCCTTCGGAAGATGGGGACAAGATCACCGAGTT
TGGGGATGACAGGGTTTTCAACGACCTGCGGTACACGATCAACAGCGACA
AACTCGCCGCGCTGGGGTGGAAAGAG
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