mRNA_Ecto-sp9_F_contig9640.17751.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQM4_9PHAE) HSP 1 Score: 494 bits (1273), Expect = 5.390e-175 Identity = 242/246 (98.37%), Postives = 245/246 (99.59%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+FVKGNICSSDMVTYVLREE IDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTG+NKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDK+TEFGDDRVFNDLRYTINSDKLAALGWKE
Sbjct: 77 KFVKGNICSSDMVTYVLREENIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGSNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKVTEFGDDRVFNDLRYTINSDKLAALGWKE 322
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB01_ECTSI) HSP 1 Score: 495 bits (1274), Expect = 6.040e-175 Identity = 243/246 (98.78%), Postives = 245/246 (99.59%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+FVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTG+NKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDK TEFGDDRVFNDLRYTINSDKLAALGWKE
Sbjct: 77 KFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGSNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKATEFGDDRVFNDLRYTINSDKLAALGWKE 322
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Dtdp-glucose (4,6-dehydratase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V8_9STRA) HSP 1 Score: 383 bits (984), Expect = 1.830e-130 Identity = 193/278 (69.42%), Postives = 219/278 (78.78%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIF-------------------------------ELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+FVKGNICSSDMVTYVLREEK+DTI+HFAAQTHVDNSFGNSF FT NNI GTHVLLESAK +G ++RF+HVSTDEVYGEGEH++EPMFED+VLEPTNPYAATKAGAEFIAKAY+RSF LP+IITRGNNVYGPHQYPEK+IPKFINQL+RG+ LT+HG G N RNFL+V DVA AF+ ILH G G IYNIGG+NEHSVLKVA+DL+ IF E P D +T F +DR FNDLRYT+NSDKL +LGW+E
Sbjct: 83 KFVKGNICSSDMVTYVLREEKVDTIIHFAAQTHVDNSFGNSFTFTHNNIMGTHVLLESAKTLGTVRRFIHVSTDEVYGEGEHNEEPMFEDHVLEPTNPYAATKAGAEFIAKAYYRSFKLPIIITRGNNVYGPHQYPEKMIPKFINQLLRGRPLTVHGDGRNTRNFLYVQDVARAFDVILHKGEVGRIYNIGGSNEHSVLKVAKDLLAIFGEDATKLNAPDAAAAAXXXXXXXXXXXEANGESPPTDTKAMT-FVEDRAFNDLRYTVNSDKLKSLGWRE 359
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Rhamnose (biosynthetic enzyme expressed n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPP3_9STRA) HSP 1 Score: 373 bits (958), Expect = 1.420e-126 Identity = 182/246 (73.98%), Postives = 209/246 (84.96%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+FVKGNICSSD+V YVL EE+IDTI+HFAAQTHVDNSFGNSF FTQNNI GTHVLLESAK IKRF+HVSTDEVYGEG DQEPMFED VLEPTNPYAATKAGAEFIAK+Y RSFNLP+IITRGNNVYGPHQYPEKLIPKF+N LMR + +T+HG G N RNFL+V DVA AFE ILH GV G IYNIGGT+E + ++VA+DL+R+ E+ +K+ +F +DR FNDLRYT+NS+ L LGW+E
Sbjct: 117 KFVKGNICSSDLVNYVLEEEEIDTIMHFAAQTHVDNSFGNSFSFTQNNILGTHVLLESAKVHNIKRFIHVSTDEVYGEGAADQEPMFEDQVLEPTNPYAATKAGAEFIAKSYSRSFNLPLIITRGNNVYGPHQYPEKLIPKFVNLLMRDRPVTLHGNGLNTRNFLYVEDVARAFEVILHRGVTGKIYNIGGTHEKANIEVAKDLIRLMGHGKEE-EKMLQFVEDRAFNDLRYTVNSEALKQLGWRE 361
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CKW6_9STRA) HSP 1 Score: 358 bits (919), Expect = 4.070e-121 Identity = 180/246 (73.17%), Postives = 204/246 (82.93%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+FVKGNICS+DMV YVL EEKIDTI+HFAAQTHVDNSFGNSFQFTQNNI+GTHVLLESAK GIKRF+HVSTDEVYGEG ++PM E++VLEPTNPYAATKAGAEF+ K+Y RSF+LPVIITRGNNVYGPHQYPEK+IPKFINQL RG+ +T+HGTG N RNFL+V DVA AFE IL G G IYNIGGTNE S + VA+ L+ + S+ + + F DRVFNDLRYTIN KLA LGW E
Sbjct: 68 KFVKGNICSADMVNYVLTEEKIDTIIHFAAQTHVDNSFGNSFQFTQNNIFGTHVLLESAKIHGIKRFIHVSTDEVYGEGGETEDPMKEEHVLEPTNPYAATKAGAEFLVKSYHRSFDLPVIITRGNNVYGPHQYPEKIIPKFINQLQRGRAVTLHGTGQNTRNFLYVEDVARAFEVILFKGQVGQIYNIGGTNEISNVDVAKMLIDYMGM-SDRTEALMTFVPDRVFNDLRYTINCAKLAELGWVE 312
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZP8_9STRA) HSP 1 Score: 355 bits (911), Expect = 4.950e-120 Identity = 173/246 (70.33%), Postives = 202/246 (82.11%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+F+KGNICSSD++ +VL EKIDTILHFAAQTHVDNSFGNSFQFTQNNI GTHVLLESAK IKRF+HVSTDEVYGE +Q+ M E+ VLEPTNPYAATKAGAEF+ K+Y RSF LPVIITRGNNVYGPHQYPEK++PKFINQLMRG+K+T+HG G NKRNFL+V DVA AFE IL G+ G IYNIGG+ E + + VAR L+++ +ED ++ F +DR+FND RY INS KL LGWKE
Sbjct: 76 KFIKGNICSSDLINFVLSSEKIDTILHFAAQTHVDNSFGNSFQFTQNNIMGTHVLLESAKLANIKRFIHVSTDEVYGEQLPNQDAMLEEQVLEPTNPYAATKAGAEFLVKSYHRSFGLPVIITRGNNVYGPHQYPEKMVPKFINQLMRGRKVTLHGNGMNKRNFLYVEDVARAFEIILFKGIVGMIYNIGGSYERTNIDVARSLIKLAGFSNED--EMMTFVEDRIFNDFRYHINSSKLIELGWKE 319
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TV33_9STRA) HSP 1 Score: 353 bits (907), Expect = 2.070e-119 Identity = 175/248 (70.56%), Postives = 200/248 (80.65%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFVHVSTDEVYGEG-EHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+FVKG+I S+D+V YVLRE IDT++HFAAQTHVDNSFGNSFQFT NNI GTHVLLE AK G I RF+HVSTDEVYGEG + D +PMFED VLEPTNPYAATKAGAEF+AK+Y RSFN+P+IITRGNNVYGPHQYPEKLIPKF NQLMRG+ +T+HG G N RNFLHV DVA AF ILH G G +YN+GG NE SV +VA +L+ I P +D + + + DR FNDLRYTINSDKL LGW E
Sbjct: 69 KFVKGDILSADIVNYVLRENAIDTVMHFAAQTHVDNSFGNSFQFTSNNIMGTHVLLECAKNCGSITRFIHVSTDEVYGEGKDFDAKPMFEDEVLEPTNPYAATKAGAEFMAKSYHRSFNMPIIITRGNNVYGPHQYPEKLIPKFANQLMRGRAVTVHGDGRNTRNFLHVTDVADAFITILHKGSVGEVYNVGGNNERSVKEVAEELIAIL-CPGQDKETLISYVPDRFFNDLRYTINSDKLIELGWTE 315
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: NAD(P)-bd_dom (domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y3X2_AURAN) HSP 1 Score: 351 bits (901), Expect = 7.060e-119 Identity = 173/247 (70.04%), Postives = 203/247 (82.19%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEH-DQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+FVKG+ICS+D+V +VL E++DTI+HFAAQTHVDNSFGNSFQFT+NNI GTHVLLE+AK IKRFVHVSTDEVYGEGE+ + EPM ED+VLEPTNPYAATKA AEF+ K+Y RSF LP+IITRGNNVYGPHQ+PEKLIPKF+NQL RG+ +T+HGTG N RNFL+V DVA AF+ ILH G IYNIGG NE S L VA++L+RI L + IT F DR FNDLRYTI++ +LA LGWKE
Sbjct: 50 KFVKGDICSADLVNFVLETEEVDTIMHFAAQTHVDNSFGNSFQFTRNNIMGTHVLLEAAKVHSIKRFVHVSTDEVYGEGENMETEPMIEDHVLEPTNPYAATKAAAEFLVKSYHRSFQLPIIITRGNNVYGPHQFPEKLIPKFVNQLARGRPVTLHGTGANTRNFLYVEDVARAFDCILHKAAVGKIYNIGGCNERSNLSVAKELIRIMGLSDNESSLIT-FVPDRAFNDLRYTIDNSELAKLGWKE 295
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRE1_9STRA) HSP 1 Score: 352 bits (903), Expect = 2.830e-118 Identity = 176/245 (71.84%), Postives = 197/245 (80.41%), Query Frame = 1
Query: 4 FVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVGIKRFVHVSTDEVYGEGEHDQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
FVKGNICS D+V YVL IDTI+HFAAQ+HVDNSFGNSFQFTQNNIYGTHVLLESAK GI+RF+HVSTDEVYGEG Q+PM E+ VLEPTNPYAATKA AEFI K+Y RSFNLPVIITRGNNVYGPHQYPEKLIPKF NQL+RG+ +T+HG G N RNFL V DVA AFE IL G G IYNIGG+NE S L+VA+ L+ +G+ I+ + DR FNDLRYTINS KL +LGWKE
Sbjct: 100 FVKGNICSPDLVNYVLEAHSIDTIMHFAAQSHVDNSFGNSFQFTQNNIYGTHVLLESAKIYGIERFIHVSTDEVYGEGSDGQDPMTEEQVLEPTNPYAATKAAAEFIVKSYHRSFNLPVIITRGNNVYGPHQYPEKLIPKFTNQLLRGRAVTLHGDGQNTRNFLFVTDVARAFEAILFKGAIGQIYNIGGSNEISNLEVAKSLIAHLGCSDREGELIS-YVPDRCFNDLRYTINSAKLHSLGWKE 343
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Match: Putative (dTDP-glucose 4,6-dehydratase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FCB2_9STRA) HSP 1 Score: 347 bits (891), Expect = 5.200e-117 Identity = 173/248 (69.76%), Postives = 203/248 (81.85%), Query Frame = 1
Query: 1 QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYGTHVLLESAKKVG-IKRFVHVSTDEVYGEGEH-DQEPMFEDNVLEPTNPYAATKAGAEFIAKAYFRSFNLPVIITRGNNVYGPHQYPEKLIPKFINQLMRGKKLTIHGTGTNKRNFLHVADVATAFEKILHAGVEGSIYNIGGTNEHSVLKVARDLMRIFELPSEDGDKITEFGDDRVFNDLRYTINSDKLAALGWKE 738
+F+KG+I ++D+VTY L EE IDTI+HFAAQTHVDNSFGNS FTQ+NIYGTHVLLE AK IKRF+HVSTDEVYGEGE + +PM E+++LEPTNPYAATKAGAEF+ K+YFRSF LP +ITRGNNVYGPHQ+PEKLIPKF NQLM GKKLT+HG GTN RNFL+V DVA AFE ILH G+ G +YNIGG NE S +KVA+ L++IF L ++ + IT + DR FNDLRYTINS KL LGW E
Sbjct: 65 KFIKGDIATADLVTYALLEENIDTIMHFAAQTHVDNSFGNSLAFTQSNIYGTHVLLECAKNCPTIKRFIHVSTDEVYGEGEDFETDPMTEEHILEPTNPYAATKAGAEFLVKSYFRSFKLPCLITRGNNVYGPHQFPEKLIPKFTNQLMSGKKLTLHGDGTNTRNFLYVTDVAAAFETILHKGLPGHVYNIGGDNEVSNVKVAKTLLKIFGLEDKEDEYIT-YVPDRQFNDLRYTINSSKLHELGWTE 311 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9640.17751.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig9640.17751.1 >prot_Ecto-sp9_F_contig9640.17751.1 ID=prot_Ecto-sp9_F_contig9640.17751.1|Name=mRNA_Ecto-sp9_F_contig9640.17751.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=246bp QFVKGNICSSDMVTYVLREEKIDTILHFAAQTHVDNSFGNSFQFTQNNIYback to top mRNA from alignment at Ecto-sp9_F_contig9640:113..4057- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig9640.17751.1 ID=mRNA_Ecto-sp9_F_contig9640.17751.1|Name=mRNA_Ecto-sp9_F_contig9640.17751.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3945bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9640:113..4057- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9640:113..4057- >mRNA_Ecto-sp9_F_contig9640.17751.1 ID=mRNA_Ecto-sp9_F_contig9640.17751.1|Name=mRNA_Ecto-sp9_F_contig9640.17751.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1476bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9640:113..4057- (Ectocarpus species9 EcSCA_722f female)back to top |