prot_Ecto-sp9_F_contig9569.17687.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9569.17687.1
Unique Nameprot_Ecto-sp9_F_contig9569.17687.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length38
Homology
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.990e-16
Identity = 38/38 (100.00%), Postives = 38/38 (100.00%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 38
            LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR
Sbjct:  759 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 796          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0F4S6_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 7.970e-8
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 38
            LD  LFLIKHLLTLREQ+ PF   FV+ +Q L+F STR
Sbjct:   12 LDGLLFLIKHLLTLREQIAPFDADFVYNQQSLDFNSTR 49          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY61_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 3.790e-7
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 37
            LD  LFL+KHLL +REQLTPF IQF+  E+KL+F  T
Sbjct:    5 LDGNLFLVKHLLVMREQLTPFDIQFLAVEKKLDFTGT 41          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SLN9_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.240e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    2 DAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 38
            D  LFLIKHLLTLREQLTPF I F   +++L+F STR
Sbjct:   71 DGDLFLIKHLLTLREQLTPFDINFSQLKRRLDFSSTR 107          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 37
            LD  LFL+KHLLTLREQL PF I F+  ++KLNF +T
Sbjct:  817 LDGHLFLVKHLLTLREQLEPFDISFMRNDRKLNFSTT 853          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7M5_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.700e-6
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR 38
            +DA LFL+KHLL LREQL PF I+F   E++L+F STR
Sbjct:  161 MDADLFLVKHLLILREQLVPFDIEFAAIEKRLDFNSTR 198          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GRW2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.160e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 37
            LD  LFLIKHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  526 LDGGLFLIKHLLTLRERITPFDIQFAVTEKNLDFSST 562          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418FKD5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 37
            LD  LFLIKHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  341 LDGGLFLIKHLLTLRERITPFDIQFAVTEKNLDFSST 377          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F0J7_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 37
            LD  LFLIKHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  357 LDGGLFLIKHLLTLRERITPFDIQFAVTEKNLDFSST 393          
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Match: Conserved (oligomeric Golgi complex subunit 3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KLI5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.330e-6
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGST 37
            LD  LFL+KHLLTLRE++TPF IQF   E+ L+F ST
Sbjct:  522 LDGGLFLVKHLLTLRERITPFDIQFAVTEKNLDFSST 558          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9569.17687.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Conserved9.990e-16100.00oligomeric Golgi complex subunit 3 n=1 Tax=Ectocar... [more]
Conserved7.970e-865.79oligomeric Golgi complex subunit 3 (Fragment) n=1 ... [more]
Conserved3.790e-764.86oligomeric Golgi complex subunit 3 (Fragment) n=1 ... [more]
Conserved1.240e-667.57oligomeric Golgi complex subunit 3 n=2 Tax=Rhizoch... [more]
Conserved1.690e-664.86oligomeric Golgi complex subunit 3 n=1 Tax=Tribone... [more]
Conserved1.700e-663.16oligomeric Golgi complex subunit 3 n=1 Tax=Nannoch... [more]
Conserved3.160e-667.57oligomeric Golgi complex subunit 3 n=1 Tax=Aphanom... [more]
Conserved3.180e-667.57oligomeric Golgi complex subunit 3 n=2 Tax=Aphanom... [more]
Conserved3.180e-667.57oligomeric Golgi complex subunit 3 n=1 Tax=Aphanom... [more]
Conserved4.330e-664.86oligomeric Golgi complex subunit 3 n=1 Tax=Aphanom... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007265Conserved oligomeric Golgi complex, subunit 3PANTHERPTHR13302CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3coord: 1..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9569contigEcto-sp9_F_contig9569:3668..3781 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9569.17687.1mRNA_Ecto-sp9_F_contig9569.17687.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9569 3668..3781 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9569.17687.1 ID=prot_Ecto-sp9_F_contig9569.17687.1|Name=mRNA_Ecto-sp9_F_contig9569.17687.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=38bp
LDAQLFLIKHLLTLREQLTPFHIQFVHAEQKLNFGSTR
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007265COG_su3