mRNA_Ecto-sp9_F_contig9568.17685.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9568.17685.1
Unique NamemRNA_Ecto-sp9_F_contig9568.17685.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9568.17685.1 vs.
Match: Protein (O-GlcNAc transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZU9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.370e-10
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 3 
Query:  411 MESPALRCASDARPGVHGGRKGSCQAGENGYVNN 512
            MESP LRCASDARPGVHG  KGSCQAGENGYVNN
Sbjct:    1 MESPTLRCASDARPGVHGDPKGSCQAGENGYVNN 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9568.17685.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Protein6.370e-1091.18O-GlcNAc transferase n=2 Tax=Ectocarpus TaxID=2879... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9568contigEcto-sp9_F_contig9568:1444..1994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size551
Cds size141
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.1760747-UTR-Ecto-sp9_F_contig9568:1443..18531622931042.1760747-UTR-Ecto-sp9_F_contig9568:1443..1853Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9568 1444..1853 +
1692279005.4879687-UTR-Ecto-sp9_F_contig9568:1443..18531692279005.4879687-UTR-Ecto-sp9_F_contig9568:1443..1853Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9568 1444..1853 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931042.196021-CDS-Ecto-sp9_F_contig9568:1853..19941622931042.196021-CDS-Ecto-sp9_F_contig9568:1853..1994Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9568 1854..1994 +
1692279005.5010138-CDS-Ecto-sp9_F_contig9568:1853..19941692279005.5010138-CDS-Ecto-sp9_F_contig9568:1853..1994Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9568 1854..1994 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9568.17685.1prot_Ecto-sp9_F_contig9568.17685.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9568 1854..1994 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9568.17685.1

>prot_Ecto-sp9_F_contig9568.17685.1 ID=prot_Ecto-sp9_F_contig9568.17685.1|Name=mRNA_Ecto-sp9_F_contig9568.17685.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=47bp
MESPALRCASDARPGVHGGRKGSCQAGENGYVNNNNLLFTGSLVQQQ
back to top

mRNA from alignment at Ecto-sp9_F_contig9568:1444..1994+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9568.17685.1 ID=mRNA_Ecto-sp9_F_contig9568.17685.1|Name=mRNA_Ecto-sp9_F_contig9568.17685.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=551bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9568:1444..1994+ (Ectocarpus species9 EcSCA_722f female)
GTTGGTTCGGCAAACAGCTCTATCCCCTTCCCCTTGAAGATCCAAATTTT
CATCTGCTCGTTAGGTGACGGTTACGTTTTCACACACATACGCGAGCGCG
CGGCAAATTTCTTCCATCTCGTGTGGAGCGGTAGCGGCGTGCTACCCACA
GCAGCTTGGGGGTGGGGAGGCACGTCATCGCATACGGGTTGGTAGAGACA
GACGGCTTGCCGCACCCTCTTTAGATGACAAGATTGGCGTCGCAAATATT
CTGTCGTGGTGGGCGGAACCGCAGGGAGAAAGCTGGCGGTCGTGGAAGAG
GAACAGCGGCGGCGGAGGCGTGAGCAGGCAAGGCAGCAGCAACAAGCGCA
GCAACAAGTTGCGTTTTCGTTGTTTCCTCGCCACGCTGAGTCAAAGGTGG
CGGCGAGACGATGGAAAGCCCCGCGTTGCGCTGTGCCTCGGACGCACGGC
CCGGGGTCCATGGTGGTCGCAAGGGGTCGTGCCAGGCGGGGGAGAACGGC
TACGTGAACAACAACAACCTGCTGTTTACTGGATCTCTAGTTCAGCAGCA
G
back to top

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9568:1444..1994+

>mRNA_Ecto-sp9_F_contig9568.17685.1 ID=mRNA_Ecto-sp9_F_contig9568.17685.1|Name=mRNA_Ecto-sp9_F_contig9568.17685.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9568:1444..1994+ (Ectocarpus species9 EcSCA_722f female)
ATGGAAAGCCCCGCGTTGCGCTGTGCCTCGGACGCACGGCCCGGGGTCCA
TGGTGGTCGCAAGGGGTCGTGCCAGGCGGGGGAGAACGGCTACGTGAACA
ACAACAACCTGCTGTTTACTGGATCTCTAGTTCAGCAGCAGATGGAAAGC
CCCGCGTTGCGCTGTGCCTCGGACGCACGGCCCGGGGTCCATGGTGGTCG
CAAGGGGTCGTGCCAGGCGGGGGAGAACGGCTACGTGAACAACAACAACC
TGCTGTTTACTGGATCTCTAGTTCAGCAGCAG
back to top