prot_Ecto-sp9_F_contig9493.17627.1 (polypeptide) Ectocarpus species9 EcSCA_722f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp9_F_contig9493.17627.1
Unique Nameprot_Ecto-sp9_F_contig9493.17627.1
Typepolypeptide
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Sequence length371
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9493.17627.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ78_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 7.450e-85
Identity = 262/294 (89.12%), Postives = 262/294 (89.12%), Query Frame = 0 
Query:    1 MRDHARNTHPAVRQAKLLRYVVGPWARRNAAAAXXXXXXXXXXA--VGEGVDGVGGDRHPGVNAGKTGXXXXXXXXXXXXXXXXXXXXDGTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFSQLEVLCQPLHLFLCDARNGNSNNGGVGSSGTRDRYSDAAIGSGTVVNRTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGGARARWCEVRQFLEALCRAGAVDDESTGAALAVLEREGRFCASSSSPVSAPAPAPSSH 292
            MRDHARNTHPAVRQAKLLRYVVGPWARRNAAAAXXXXXXXXXX   VGEGVDGVGGDRHPGVNAGKTG                    DGTK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFF QLEVLCQPLHLFLCDAR GNSNNG VGSSGTRDRYSDAAIGSGTVVNRTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RNGG RARWCEVRQFLEALCRAG VDDE TGAALAVLEREGRFCASSS PVSAPAPAPSSH
Sbjct:    1 MRDHARNTHPAVRQAKLLRYVVGPWARRNAAAAXXXXXXXXXXXXXVGEGVDGVGGDRHPGVNAGKTGGGGSGSNNVDPNTMNGGTP-DGTKNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFCQLEVLCQPLHLFLCDARIGNSNNGRVGSSGTRDRYSDAAIGSGTVVNRTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRNGGPRARWCEVRQFLEALCRAGEVDDECTGAALAVLEREGRFCASSSCPVSAPAPAPSSH 293
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9493.17627.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L3_9PHAE)

HSP 1 Score: 226 bits (575), Expect = 2.600e-65
Identity = 228/293 (77.82%), Postives = 228/293 (77.82%), Query Frame = 0 
Query:    1 MRDHARNTHPAVRQAKLLRYVVGPWARRNAAAAXXXXXXXXXXAVGEGVDGVGGDRHPGVNAGKTGXXXXXXXXXXXXXXXXXXXXDGTKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-FFSQLEVLCQPLHLFLCDARNGNSNNGGVGSSGTRDRYSDAAIGSGTVVNRTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNGGARARWCEVRQFLEALCRAGAVDDESTGAALAVLEREGRFCASSSSPVSAPAPAPSSH 292
            MRDHARN HPAVRQAKLLRYVVGPWARRNAAAAXXXXXXXXX  VGEGVDGVGGDR PG NAG    XXXXXXX            DGTK      XXXXXXXXXXXXXXXXXXXXXXXX FFSQLEVLCQPLHLFLCDARNGNSNNGGVGSSG RDRYSDAAIGSGTVVNRTGG  XXXXXXXXXXXXXXX        XXXXXXXXXXXXXX X X       XXXXXXX NGGARARWCE      ALCRA  VDDE TGAALAVLEREGRFCASSSSP S      SSH
Sbjct:  143 MRDHARNAHPAVRQAKLLRYVVGPWARRNAAAAXXXXXXXXX--VGEGVDGVGGDRCPGTNAGNX--XXXXXXXNVDPNTTNRGTADGTKDNRKHPXXXXXXXXXXXXXXXXXXXXXXXXRFFSQLEVLCQPLHLFLCDARNGNSNNGGVGSSGMRDRYSDAAIGSGTVVNRTGGAGXXXXXXXXXXXXXXXRPRGAAKGXXXXXXXXXXXXXXSXTXRGPTGGHXXXXXXXXNGGARARWCE------ALCRAAEVDDECTGAALAVLEREGRFCASSSSPASXXXXXXSSH 425
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9493.17627.1 vs.
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized7.450e-8589.12protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.600e-6577.82protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..29
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 42..46
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..46
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 47..370
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 30..41

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9493contigEcto-sp9_F_contig9493:109..3248 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus species9 EcSCA_722f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9493.17627.1mRNA_Ecto-sp9_F_contig9493.17627.1Ectocarpus species9 EcSCA_722f femalemRNAEcto-sp9_F_contig9493 76..4454 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp9_F_contig9493.17627.1 ID=prot_Ecto-sp9_F_contig9493.17627.1|Name=mRNA_Ecto-sp9_F_contig9493.17627.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=371bp
MRDHARNTHPAVRQAKLLRYVVGPWARRNAAAAAAAAAAAAAGAVGEGVD
GVGGDRHPGVNAGKTGGGGSGSSNNVGPNTTNSGTPDGTKNNRKHPPPPR
NTKRTTTTTNAAVVVDHHRRFFSQLEVLCQPLHLFLCDARNGNSNNGGVG
SSGTRDRYSDAAIGSGTVVNRTGGAGGGGSATSKAGSGSGGRPRGAAKGT
TGGGGGSGGGRAASGRGRGSAGGHGTGGRGSRNGGARARWCEVRQFLEAL
CRAGAVDDESTGAALAVLEREGRFCASSSSPVSAPAPAPSSHHAVMVAAA
APISGGGGREGFGGAPPPRLTWTSGGLRLRFGRFFSSKASTVRLGRRLWR
WREGWTALFPSTSFWPACSR*
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