mRNA_Ecto-sp9_F_contig9471.17617.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9471.17617.1
Unique NamemRNA_Ecto-sp9_F_contig9471.17617.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9471.17617.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9471contigEcto-sp9_F_contig9471:3919..4630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size590
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931030.506948-CDS-Ecto-sp9_F_contig9471:3919..41251622931030.506948-CDS-Ecto-sp9_F_contig9471:3919..4125Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9471 3920..4125 -
1692279000.6191342-CDS-Ecto-sp9_F_contig9471:3919..41251692279000.6191342-CDS-Ecto-sp9_F_contig9471:3919..4125Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9471 3920..4125 -
1622931030.5265367-CDS-Ecto-sp9_F_contig9471:4248..46301622931030.5265367-CDS-Ecto-sp9_F_contig9471:4248..4630Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9471 4249..4630 -
1692279000.6303225-CDS-Ecto-sp9_F_contig9471:4248..46301692279000.6303225-CDS-Ecto-sp9_F_contig9471:4248..4630Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9471 4249..4630 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9471.17617.1prot_Ecto-sp9_F_contig9471.17617.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9471 3920..4630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9471.17617.1

>prot_Ecto-sp9_F_contig9471.17617.1 ID=prot_Ecto-sp9_F_contig9471.17617.1|Name=mRNA_Ecto-sp9_F_contig9471.17617.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=196bp
VNGTTAPGCSVVVAAAGEIETIEGPGVAAGRGVAVTAAIAGEVVNGTPVS
GSVVPAAAGGIEAIEGSRVPAGRGVAVTAAIAGVEVNGTTAPGCSVVVDA
AGGTETTEGSVVLAAIAGAEVNGTTASGCSVVVAAAGGIETIEGAIVAAG
RGVAVTTAIPGAEVNGTTAPGCSVVVAAAGGIETIEGSGVAAGRGV
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mRNA from alignment at Ecto-sp9_F_contig9471:3919..4630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9471.17617.1 ID=mRNA_Ecto-sp9_F_contig9471.17617.1|Name=mRNA_Ecto-sp9_F_contig9471.17617.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=712bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9471:3919..4630- (Ectocarpus species9 EcSCA_722f female)
GTCAATGGCACAACGGCTCCAGGCTGTTCGGTGGTGGTTGCTGCTGCTGG
AGAGATAGAAACGATCGAAGGTCCCGGGGTTGCAGCAGGAAGGGGGGTAG
CGGTTACCGCGGCTATAGCGGGAGAAGTAGTCAACGGCACACCGGTCTCG
GGCTCTGTGGTGCCTGCTGCTGCTGGAGGGATAGAAGCGATTGAAGGTTC
AAGGGTTCCAGCAGGAAGGGGGGTAGCGGTTACAGCAGCTATAGCGGGAG
TAGAAGTCAATGGCACAACGGCTCCAGGTTGTTCGGTGGTGGTTGATGCT
GCTGGAGGAACAGAAACTACTGAAGGTTCGGTGGTTCTAGCGGCTATAGC
GGGAGCAGAAGTCAACGGCACAACGGCTTCAGGCTGTTCGGTGGTGGTTG
CTGCTGGAGGGATAGAAACGAGTGAAGGTTCCAAAGTTGCAGCAGGAAGG
GGGGTACGGGTTGCAGCGGCTACACCAGGGGCAGAAGTCAACATCACAAC
TCCAGGCTGTTCGGTAGTGGTTGCTGCCGCTGGAGGGATAGAAACGATTG
AAGGTGCCATAGTTGCAGCAGGAAGGGGGGTAGCGGTTACAACGGCTATT
CCAGGGGCAGAAGTCAATGGCACAACGGCTCCAGGCTGTTCGGTGGTGGT
TGCTGCTGCTGGAGGGATAGAAACGATCGAAGGTTCCGGGGTTGCAGCAG
GAAGGGGGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9471:3919..4630-

>mRNA_Ecto-sp9_F_contig9471.17617.1 ID=mRNA_Ecto-sp9_F_contig9471.17617.1|Name=mRNA_Ecto-sp9_F_contig9471.17617.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1176bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9471:3919..4630- (Ectocarpus species9 EcSCA_722f female)
GTCAATGGCACAACGGCTCCAGGCTGTTCGGTGGTGGTTGCTGCTGCTGG
AGAGATAGAAACGATCGAAGGTCCCGGGGTTGCAGCAGGAAGGGGGGTAG
CGGTTACCGCGGCTATAGCGGGAGAAGTAGTCAACGGCACACCGGTCTCG
GGCTCTGTGGTGCCTGCTGCTGCTGGAGGGATAGAAGCGATTGAAGGTTC
AAGGGTTCCAGCAGGAAGGGGGGTAGCGGTTACAGCAGCTATAGCGGGAG
TAGAAGTCAATGGCACAACGGCTCCAGGTTGTTCGGTGGTGGTTGATGCT
GCTGGAGGAACAGAAACTACTGAAGGTTCGGTGGTTCTAGCGGCTATAGC
GGGAGCAGAAGTCAACGGCACAACGGCTTCAGGTCAATGGCACAACGGCT
CCAGGCTGTTCGGTGGTGGTTGCTGCTGCTGGAGAGATAGAAACGATCGA
AGGTCCCGGGGTTGCAGCAGGAAGGGGGGTAGCGGTTACCGCGGCTATAG
CGGGAGAAGTAGTCAACGGCACACCGGTCTCGGGCTCTGTGGTGCCTGCT
GCTGCTGGAGGGATAGAAGCGATTGAAGGTTCAAGGGTTCCAGCAGGAAG
GGGGGTAGCGGTTACAGCAGCTATAGCGGGAGTAGAAGTCAATGGCACAA
CGGCTCCAGGTTGTTCGGTGGTGGTTGATGCTGCTGGAGGAACAGAAACT
ACTGAAGGTTCGGTGGTTCTAGCGGCTATAGCGGGAGCAGAAGTCAACGG
CACAACGGCTTCAGGCTGTTCGGTAGTGGTTGCTGCCGCTGGAGGGATAG
AAACGATTGAAGGTGCCATAGTTGCAGCAGGAAGGGGGGTAGCGGTTACA
ACGGCTATTCCAGGGGCAGAAGTCAATGGCACAACGGCTCCAGGCTGTTC
GGTGGTGGTTGCTGCTGCTGGAGGGATAGAAACGATCGAAGGTTCCGGGG
TTGCAGCAGGAAGGGGGGTAGCTGTTCGGTAGTGGTTGCTGCCGCTGGAG
GGATAGAAACGATTGAAGGTGCCATAGTTGCAGCAGGAAGGGGGGTAGCG
GTTACAACGGCTATTCCAGGGGCAGAAGTCAATGGCACAACGGCTCCAGG
CTGTTCGGTGGTGGTTGCTGCTGCTGGAGGGATAGAAACGATCGAAGGTT
CCGGGGTTGCAGCAGGAAGGGGGGTA
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