mRNA_Ecto-sp9_F_contig936.17524.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G1_ECTSI) HSP 1 Score: 543 bits (1400), Expect = 2.010e-178 Identity = 624/647 (96.45%), Postives = 628/647 (97.06%), Query Frame = 1
Query: 388 FRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALAQRVEGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXXEMRDVGLAPTFFAYISAMSALKVAGQWKEALSLLDEMVKGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNVLIDACARGGNHWEAARLLKKTKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALGLLDEMRKSXXXXXXXXXXXXXXSCAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG 2328
FRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALA EGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXX MR VGLAPTFFAYISAMSA+KVAGQWKEALSLLDEM KGRLISDVFSFYNVVDAYGKDGQLARTLVQT+ANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFN+LIDACARGG+HW AARLL K KSLGLRPNSLSYNPIIHSCRGGTDEEWRLAL L XXXXXXXXXXXXXX AKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG
Sbjct: 4 FRRKIRVRKVSKRIARTTRHNSFISTAKVRGARGQWREVLRLLDKMAEDGIPLNSYAYNSALSSIAKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALALGGEGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXXXMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLARTLVQTSANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNILIDACARGGSHWAAARLLTKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLXXXXXXXXXXXXXXXXXXXXXXXAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG 650
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN1_9PHAE) HSP 1 Score: 480 bits (1236), Expect = 1.610e-156 Identity = 330/409 (80.68%), Postives = 335/409 (81.91%), Query Frame = 1
Query: 1159 ALAQRVEGVPMSTTMYNFGIXXXXXXXXXXXXXXXXXRMKSNPATPPDAQTXXXXXXXXXXXXXXXXXXXXXXEMRDVGLAPTFFAYISAMSALKVAGQWKEALSLLDEMVKGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAEDPDELVKRMENNGVELDVMSFNVLIDACAR-------------------GGNHWEAARLLKKTKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALGLLDEMRKSXXXXXXXXXXXXXXSCAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLNPIPTSDVYLGGSPGTPEGGEVG 2328
ALAQR EGVPMSTTMYNFGI RMKSNPATPPDAQT EMR VGLAPTFFAYISAMSA+KVAGQWKEALSLLDEM KGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAE+PDELVKRMENNGVELDVMSFN+LIDACAR GG+HW AARLLKK KSLGLRPNSLSYNPIIHSCRGGTDEEWRLAL L XXXXXXXXXXXXXX AKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLL+PIPTSDVYLGGS GTPEGGEVG
Sbjct: 76 ALAQRGEGVPMSTTMYNFGIDAGVALLE---------RMKSNPATPPDAQTYAYLIDACAKDANLEDALAYLTEMRAVGLAPTFFAYISAMSAIKVAGQWKEALSLLDEMAKGRLISDVFSFYNVVDAYGKDGQLARTLVQTNANPTEIAADSENEMRSDADLNAWRAEEPDELVKRMENNGVELDVMSFNILIDACARYTAHRVPLPLPMSHVPFRKGGSHWAAARLLKKMKSLGLRPNSLSYNPIIHSCRGGTDEEWRLALDLXXXXXXXXXXXXXXXXXXXXXXXAKAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVRADPTLEANQRTYTSAINCFQQFQGGQSVASLASTLAGQSSREEMLLDPIPTSDVYLGGSSGTPEGGEVG 475
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNM6_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 3.950e-20 Identity = 45/51 (88.24%), Postives = 49/51 (96.08%), Query Frame = 2
Query: 2699 QQGDWADEDEPEEEPEALTSPAGASIVEMLKRHHRDGTDPPEWLMSIVLDS 2851
QQG WADED+PEEEPEAL+SPAGASIVEMLK+HHRDGTDPPEWLMSIVL +
Sbjct: 72 QQGGWADEDKPEEEPEALSSPAGASIVEMLKQHHRDGTDPPEWLMSIVLPA 122
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U3_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.760e-18 Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = 2
Query: 2678 PHCAGREQQGDWADEDEPE-EEPEALTSPAGASIVEMLKRHHRDGTDPPEWLMSIVLDS 2851
P AGREQQG WADE+EPE EEPE LTSPAGA IVEMLK+HHRDGT+PPEWLMSIVL +
Sbjct: 251 PPAAGREQQGRWADEEEPEDEEPEVLTSPAGAPIVEMLKQHHRDGTEPPEWLMSIVLPA 309
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV32_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 4.000e-18 Identity = 46/59 (77.97%), Postives = 51/59 (86.44%), Query Frame = 2
Query: 2678 PHCAGREQQGDWADEDEPE-EEPEALTSPAGASIVEMLKRHHRDGTDPPEWLMSIVLDS 2851
P AGREQQG WADE+EPE EEPE LTSPA A IVEMLK+HHRDGT+PPEWLMS+VL +
Sbjct: 116 PPAAGREQQGRWADEEEPEDEEPEVLTSPAVAPIVEMLKQHHRDGTEPPEWLMSVVLPA 174
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K518_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 2.230e-13 Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = -2
Query: 2690 YNGHEPFRRVGPIAVVPFQHLHDGCASRRCKSLGLLL-GFVLVCPIPLLLPA 2842
YNGHEPF R GPI VV FQHLH+GC SR CK+LGLL+ F+L+ P PLLLPA
Sbjct: 21 YNGHEPFGRFGPITVVLFQHLHNGCDSRICKNLGLLIFWFLLIGPTPLLLPA 72
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S7_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 1.260e-9 Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 2
Query: 2732 EEEPEALTSPAGASIVEMLKRHHRDGTDPPEWLMSIVLDS 2851
EEEPE +SPAGASIVEMLK HHRDGTDPPEWLMSI L +
Sbjct: 135 EEEPEVFSSPAGASIVEMLK-HHRDGTDPPEWLMSIALPA 173
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYU6_9PHAE) HSP 1 Score: 68.9 bits (167), Expect = 1.130e-8 Identity = 32/47 (68.09%), Postives = 35/47 (74.47%), Query Frame = 2
Query: 2711 WADEDEPEEEPEALTSPAGASIVEMLKRHHRDGTDPPEWLMSIVLDS 2851
W D E L SPAGASIVEMLKRHHRDGTDPPEWLMS++L +
Sbjct: 270 WVDXXXXXXXSEVLLSPAGASIVEMLKRHHRDGTDPPEWLMSLLLPA 316 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig936.17524.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig936.17524.1 >prot_Ecto-sp9_F_contig936.17524.1 ID=prot_Ecto-sp9_F_contig936.17524.1|Name=mRNA_Ecto-sp9_F_contig936.17524.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=756bp MMEPASHPCFRINSRFAPLCFIPTTHRARPRPNEPWRLSRRKHRLGCSAAback to top mRNA from alignment at Ecto-sp9_F_contig936:15777..25433- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig936.17524.1 ID=mRNA_Ecto-sp9_F_contig936.17524.1|Name=mRNA_Ecto-sp9_F_contig936.17524.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=9657bp|location=Sequence derived from alignment at Ecto-sp9_F_contig936:15777..25433- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig936:15777..25433- >mRNA_Ecto-sp9_F_contig936.17524.1 ID=mRNA_Ecto-sp9_F_contig936.17524.1|Name=mRNA_Ecto-sp9_F_contig936.17524.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=4536bp|location=Sequence derived from alignment at Ecto-sp9_F_contig936:15777..25433- (Ectocarpus species9 EcSCA_722f female)back to top |