mRNA_Ecto-sp9_F_contig936.17522.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig936.17522.1
Unique NamemRNA_Ecto-sp9_F_contig936.17522.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig936.17522.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN3_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 3.190e-56
Identity = 154/187 (82.35%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:    1 RDLVAGGTWLGVSRSGKFATVTNVSSTWEHMLEVVALGGWANKAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSVWSSSLGWLYALCAAAGLVTVASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCARLSKVSRMGKG 561
            RDLVAGGTWLGVSRSGKFAT+TNVSSTWE++LE V LGGWANK A V XXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXXXXXXXXXXXX       VSSLGLSRPAGSS+ SSSLGWLYALCAAAGLVT ASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYC+RLSK  R   G
Sbjct:   56 RDLVAGGTWLGVSRSGKFATLTNVSSTWENVLEDVTLGGWANKVAAVAXXXXXXXXXXXXXXXXXRAGHENGISXXXXXXXXXXXXXXXXXXXXXXXX-------VSSLGLSRPAGSSLSSSSLGWLYALCAAAGLVTAASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCSRLSKERRRYAG 235
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BLAST of mRNA_Ecto-sp9_F_contig936.17522.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS5_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.840e-51
Identity = 163/187 (87.17%), Postives = 164/187 (87.70%), Query Frame = 1 
Query:    1 RDLVAGGTWLGVSRSGKFATVTNVSSTWEHMLEVVALGGWANKAATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSSLGLSRPAGSSVWSSSLGWLYALCAAAGLVTVASVPLAVAVARAKARKSRGGLVADFLKGDEDAETYCARLSKVSRMGKG 561
            RDLVAGGTWLGVSRSGKFAT+TNV STWE MLEVVALGGWANKAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       SLG S PAGSS  SS LGWLYALCAAAGLVT ASVPLAVAVAR KARKSRGGLVADFLKGDEDAETYCARLSK  R   G
Sbjct:   64 RDLVAGGTWLGVSRSGKFATLTNVFSTWESMLEVVALGGWANKAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP------SLGFSTPAGSSSSSSLLGWLYALCAAAGLVTAASVPLAVAVARIKARKSRGGLVADFLKGDEDAETYCARLSKERRRFAG 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig936.17522.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized3.190e-5682.35protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.840e-5187.17protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig936contigEcto-sp9_F_contig936:41..619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNRDE protein domains
Ec32 orthologEc-27_003340.2
Exons1
Model size581
Cds size579
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931015.8664243-CDS-Ecto-sp9_F_contig936:40..6191622931015.8664243-CDS-Ecto-sp9_F_contig936:40..619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig936 41..619 -
1692278993.8698893-CDS-Ecto-sp9_F_contig936:40..6191692278993.8698893-CDS-Ecto-sp9_F_contig936:40..619Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig936 41..619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig936.17522.1prot_Ecto-sp9_F_contig936.17522.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig936 41..619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig936.17522.1

>prot_Ecto-sp9_F_contig936.17522.1 ID=prot_Ecto-sp9_F_contig936.17522.1|Name=mRNA_Ecto-sp9_F_contig936.17522.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=193bp
RDLVAGGTWLGVSRSGKFATVTNVSSTWEHMLEVVALGGWANKAATVAAA
AAAAAAAAILRARAGHEHGSSSSDATSGSSGGGGDGGGGGDGGGGGWGAA
AAAAVVSSLGLSRPAGSSVWSSSLGWLYALCAAAGLVTVASVPLAVAVAR
AKARKSRGGLVADFLKGDEDAETYCARLSKVSRMGKGVPKWS*
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mRNA from alignment at Ecto-sp9_F_contig936:41..619-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig936.17522.1 ID=mRNA_Ecto-sp9_F_contig936.17522.1|Name=mRNA_Ecto-sp9_F_contig936.17522.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=579bp|location=Sequence derived from alignment at Ecto-sp9_F_contig936:41..619- (Ectocarpus species9 EcSCA_722f female)
CGCGATCTGGTCGCAGGTGGGACCTGGCTGGGCGTGAGCCGCTCCGGAAA
GTTCGCCACCGTGACTAACGTCTCCTCGACCTGGGAGCACATGCTCGAGG
TCGTGGCCCTGGGAGGGTGGGCCAACAAGGCGGCGACCGTCGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCGGCCATCCTTCGCGCACGGGCTGGCCACGA
GCACGGGAGCAGCAGTAGTGATGCTACTAGCGGCAGCAGCGGCGGCGGCG
GCGACGGCGGCGGCGGCGGCGACGGCGGCGGCGGCGGCTGGGGTGCCGCT
GCTGCTGCTGCTGTGGTGTCGAGCTTGGGCTTGTCTAGACCGGCGGGCTC
CTCCGTGTGGTCGTCGTCGCTCGGCTGGCTGTACGCGCTGTGCGCGGCGG
CGGGGCTGGTCACGGTCGCCTCGGTGCCCCTGGCGGTGGCGGTGGCGAGG
GCCAAGGCCCGGAAGAGCCGGGGCGGCCTCGTGGCCGACTTCTTGAAGGG
CGACGAGGACGCCGAGACATACTGCGCACGACTATCCAAGGTGAGTAGGA
TGGGGAAGGGGGTGCCGAAGTGGAGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig936:41..619-

>mRNA_Ecto-sp9_F_contig936.17522.1 ID=mRNA_Ecto-sp9_F_contig936.17522.1|Name=mRNA_Ecto-sp9_F_contig936.17522.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1158bp|location=Sequence derived from alignment at Ecto-sp9_F_contig936:41..619- (Ectocarpus species9 EcSCA_722f female)
CGCGATCTGGTCGCAGGTGGGACCTGGCTGGGCGTGAGCCGCTCCGGAAA
GTTCGCCACCGTGACTAACGTCTCCTCGACCTGGGAGCACATGCTCGAGG
TCGTGGCCCTGGGAGGGTGGGCCAACAAGGCGGCGACCGTCGCCGCCGCC
GCCGCCGCCGCCGCCGCCGCGGCCATCCTTCGCGCACGGGCTGGCCACGA
GCACGGGAGCAGCAGTAGTGATGCTACTAGCGGCAGCAGCGGCGGCGGCG
GCGACGGCGGCGGCGGCGGCGACGGCGGCGGCGGCGGCTGGGGTGCCGCT
GCTGCTGCTGCTGTGGTGTCGAGCTTGGGCTTGTCTAGACCGGCGGGCTC
CTCCGTGTGGTCGTCGTCGCTCGGCTGGCTGTACGCGCTGTGCGCGGCGG
CGGGGCTGGTCACGGTCGCCTCGGTGCCCCTGGCGGTGGCGGTGGCGAGG
GCCAAGGCCCGGAAGAGCCGGGGCGGCCTCGTGGCCGACTTCTTGAAGGG
CGACGAGGACGCCGAGACATACTGCGCACGACTATCCAAGGTGAGTAGGA
TGGGGAAGGGGGTGCCGAAGTGGAGTTGACGCGATCTGGTCGCAGGTGGG
ACCTGGCTGGGCGTGAGCCGCTCCGGAAAGTTCGCCACCGTGACTAACGT
CTCCTCGACCTGGGAGCACATGCTCGAGGTCGTGGCCCTGGGAGGGTGGG
CCAACAAGGCGGCGACCGTCGCCGCCGCCGCCGCCGCCGCCGCCGCCGCG
GCCATCCTTCGCGCACGGGCTGGCCACGAGCACGGGAGCAGCAGTAGTGA
TGCTACTAGCGGCAGCAGCGGCGGCGGCGGCGACGGCGGCGGCGGCGGCG
ACGGCGGCGGCGGCGGCTGGGGTGCCGCTGCTGCTGCTGCTGTGGTGTCG
AGCTTGGGCTTGTCTAGACCGGCGGGCTCCTCCGTGTGGTCGTCGTCGCT
CGGCTGGCTGTACGCGCTGTGCGCGGCGGCGGGGCTGGTCACGGTCGCCT
CGGTGCCCCTGGCGGTGGCGGTGGCGAGGGCCAAGGCCCGGAAGAGCCGG
GGCGGCCTCGTGGCCGACTTCTTGAAGGGCGACGAGGACGCCGAGACATA
CTGCGCACGACTATCCAAGGTGAGTAGGATGGGGAAGGGGGTGCCGAAGT
GGAGTTGA
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