mRNA_Ecto-sp9_F_contig9253.17414.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig9253.17414.1
Unique NamemRNA_Ecto-sp9_F_contig9253.17414.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig9253.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB2_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 9.000e-50
Identity = 142/190 (74.74%), Postives = 147/190 (77.37%), Query Frame = 3 
Query:  435 MPHAPAGGPEATVPNENVGKAPTPSPQLXXXXXXRPAVAAAGATEAVVAGAAEREAVEAAAPSSXXXXXLLPPLTYPAXXXXXXXXXXXXXXXXXXXXXXXXAPSFFLARSSDDDGANMFGSAAARAGAGAPEAPAVAGELVSSVPELLILPEPHSLDGGLDGGLPAVPNENDGRAAAPTPSTPLLPPLT 1004
            M HA AGGPEA VPNENVGKAPTPSPQL      RPA AAAGATEAVVA A ER+AVEA APSS XXXX         XXXXXXXXXXXXXXXXXXXXXXXX PS F A SSDDDGAN+FG      G GAP APAV GE+V +VPELLILPEPH+LDGGLDGGLPAV NENDG   APTPS PLLP LT
Sbjct:    1 MSHALAGGPEAIVPNENVGKAPTPSPQLLRPTPTRPAGAAAGATEAVVAEATERDAVEATAPSSSXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXVPSLFPAGSSDDDGANIFGLTPTGTGVGAPNAPAVVGEVVVAVPELLILPEPHTLDGGLDGGLPAVSNENDGTTPAPTPSPPLLPLLT 189
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BLAST of mRNA_Ecto-sp9_F_contig9253.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G697_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 7.610e-42
Identity = 75/88 (85.23%), Postives = 80/88 (90.91%), Query Frame = -1 
Query:  252 LRRRCWCFSNVLVRDGSLWAAGGGMGHGELRQLCNSCRFLSRHQGCFRSSASGGSGTDNIDADIGGATGVDRGRCCRCFICCRSCWKG 515
            L+RRCWCFSNVL+RD SLWAAG G+G+GELRQLCNSC FLSRHQGCFRSS  GGSGTDN+DADIGGATG DRGR CR FICCRSCWKG
Sbjct:  803 LQRRCWCFSNVLIRDDSLWAAGEGLGYGELRQLCNSCLFLSRHQGCFRSSGFGGSGTDNVDADIGGATGGDRGRGCRRFICCRSCWKG 890
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BLAST of mRNA_Ecto-sp9_F_contig9253.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK59_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 1.840e-40
Identity = 81/90 (90.00%), Postives = 84/90 (93.33%), Query Frame = -2 
Query:   71 ILTPTSVELPAWTGDGAAGASSAAAPAGKVVSDCDDAVVGELGTPAPRHASTPPAPADGEPVEVEQGMDPATGTSLPLQAPQQESVGERE 340
            +LTPTSVELPA TGDGAAG SSA APAGKVVSDCDDAVVGELGTPAPRHA+T PAPADGEPV VEQGM+PATGTSLP QAPQQESVGERE
Sbjct:    1 MLTPTSVELPAGTGDGAAGTSSAVAPAGKVVSDCDDAVVGELGTPAPRHAATSPAPADGEPV-VEQGMNPATGTSLPRQAPQQESVGERE 89
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BLAST of mRNA_Ecto-sp9_F_contig9253.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMZ8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.010e-17
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = -2 
Query:  815 HVSGGRSGVDGVGAAALPSFSFGTAGRPPSRPPSSEWGSGKISSSGTDETSSPATAGASGAPAP 1006
            HVSGGRSG DGVGA  +P FSFGTAGRPPSRPPSS WGSGKISSSGT   +SP TAGA GAP P
Sbjct:   75 HVSGGRSGCDGVGAGGVPPFSFGTAGRPPSRPPSSVWGSGKISSSGTATKTSPTTAGAFGAPTP 138
[Close]
BLAST of mRNA_Ecto-sp9_F_contig9253.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G696_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.160e-6
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = -2 
Query:  425 GSCGDGVGAFPTFSFGTVASGPPAGAWGMESF 520
            GSCGDGVGAFP FSFGT ASGPPA AW ME+F
Sbjct:  457 GSCGDGVGAFPAFSFGTTASGPPARAWDMETF 488
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig9253.17414.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
Uncharacterized9.000e-5074.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized7.610e-4285.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.840e-4090.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.010e-1779.69protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized5.160e-684.38protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig9253contigEcto-sp9_F_contig9253:2899..3905 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1009
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.04909-UTR-Ecto-sp9_F_contig9253:2898..33321622931001.04909-UTR-Ecto-sp9_F_contig9253:2898..3332Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9253 2899..3332 +
1692278987.5687406-UTR-Ecto-sp9_F_contig9253:2898..33321692278987.5687406-UTR-Ecto-sp9_F_contig9253:2898..3332Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig9253 2899..3332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931001.0682516-CDS-Ecto-sp9_F_contig9253:3332..39051622931001.0682516-CDS-Ecto-sp9_F_contig9253:3332..3905Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9253 3333..3905 +
1692278987.5802457-CDS-Ecto-sp9_F_contig9253:3332..39051692278987.5802457-CDS-Ecto-sp9_F_contig9253:3332..3905Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig9253 3333..3905 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig9253.17414.1prot_Ecto-sp9_F_contig9253.17414.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig9253 3333..3905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig9253.17414.1

>prot_Ecto-sp9_F_contig9253.17414.1 ID=prot_Ecto-sp9_F_contig9253.17414.1|Name=mRNA_Ecto-sp9_F_contig9253.17414.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=191bp
MPHAPAGGPEATVPNENVGKAPTPSPQLPSPTPTRPAVAAAGATEAVVAG
AAEREAVEAAAPSSSPSPSLLPPLTYPAVAAAATAAAAAAEVAVAVEAAV
AAAPSFFLARSSDDDGANMFGSAAARAGAGAPEAPAVAGELVSSVPELLI
LPEPHSLDGGLDGGLPAVPNENDGRAAAPTPSTPLLPPLTC
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mRNA from alignment at Ecto-sp9_F_contig9253:2899..3905+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig9253.17414.1 ID=mRNA_Ecto-sp9_F_contig9253.17414.1|Name=mRNA_Ecto-sp9_F_contig9253.17414.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1007bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9253:2899..3905+ (Ectocarpus species9 EcSCA_722f female)
CCTGCTGCTGGTCCTCCTCCTCCTTCTCTCTTCTCCTCTTTGTCCCCCTG
GGCCCTTGCTCCTCCTCGCCCTCTCTCTCTCCGACAGACTCCTGCTGCGG
CGCCTGAAGTGGCAAGCTCGTTCCAGTCGCAGGGTCCATACCCTGCTCGA
CCTCCACAGGCTCACCATCTGCTGGGGCCGGCGGAGTCGAAGCGTGCCGG
GGAGCAGGAGTACCTAGCTCACCCACCACAGCATCGTCACAATCACTCAC
AACCTTTCCAGCAGGAGCGGCAGCAGATGAAGCACCGGCAGCACCGTCCC
CTGTCCACGCCGGTAGCTCCACCGATGTCGGCGTCAATATTGTCGGTCCC
GCTCCCGCCGGAGGCGGAGCTCCGAAAACACCCCTGGTGGCGGGAGAGGA
ACCGGCAGCTATTGCAAAGTTGCCGAAGCTCTCCATGCCCCATGCCCCCG
CCGGCGGCCCAGAGGCTACCGTCCCGAACGAGAACGTTGGAAAAGCACCA
ACACCGTCGCCGCAGCTACCGTCACCAACACCCACGCGTCCGGCAGTAGC
AGCAGCGGGAGCAACAGAGGCGGTAGTAGCAGGGGCGGCGGAAAGAGAAG
CCGTAGAGGCGGCAGCCCCGTCCTCATCGCCATCGCCATCACTACTCCCA
CCACTTACATACCCGGCAGTAGCTGCAGCAGCAACAGCAGCGGCGGCGGC
GGCGGAGGTAGCGGTCGCAGTAGAAGCGGCAGTGGCGGCAGCCCCATCCT
TTTTCCTCGCCAGGAGCTCTGACGATGATGGCGCCAACATGTTCGGTTCC
GCTGCCGCCCGAGCCGGAGCGGGAGCTCCTGAAGCACCGGCAGTAGCGGG
AGAGCTTGTTTCGTCTGTTCCGGAGCTGCTGATTTTGCCCGAGCCCCATT
CACTGGATGGCGGCCTGGATGGCGGCCTACCGGCTGTTCCAAACGAGAAT
GACGGAAGAGCAGCAGCACCAACACCATCGACACCACTTCTCCCACCACT
CACATGC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig9253:2899..3905+

>mRNA_Ecto-sp9_F_contig9253.17414.1 ID=mRNA_Ecto-sp9_F_contig9253.17414.1|Name=mRNA_Ecto-sp9_F_contig9253.17414.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp9_F_contig9253:2899..3905+ (Ectocarpus species9 EcSCA_722f female)
ATGCCCCATGCCCCCGCCGGCGGCCCAGAGGCTACCGTCCCGAACGAGAA
CGTTGGAAAAGCACCAACACCGTCGCCGCAGCTACCGTCACCAACACCCA
CGCGTCCGGCAGTAGCAGCAGCGGGAGCAACAGAGGCGGTAGTAGCAGGG
GCGGCGGAAAGAGAAGCCGTAGAGGCGGCAGCCCCGTCCTCATCGCCATC
GCCATCACTACTCCCACCACTTACATACCCGGCAGTAGCTGCAGCAGCAA
CAGCAGCGGCGGCGGCGGCGGAGGTAGCGGTCGCAGTAGAAGCGGCAGTG
GCGGCAGCCCCATCCTTTTTCCTCGCCAGGAGCTCTGACGATGATGGCGC
CAACATGTTCGGTTCCGCTGCCGCCCGAGCCGGAGCGGGAGCTCCTGAAG
CACCGGCAGTAGCGGGAGAGCTTGTTTCGTCTGTTCCGGAGCTGCTGATT
TTGCCCGAGCCCCATTCACTGGATGGCGGCCTGGATGGCGGCCTACCGGC
TGTTCCAAACGAGAATGACGGAAGAGCAGCAGCACCAACACCATCGACAC
CACTTCTCCCACCACTCACATGCATGCCCCATGCCCCCGCCGGCGGCCCA
GAGGCTACCGTCCCGAACGAGAACGTTGGAAAAGCACCAACACCGTCGCC
GCAGCTACCGTCACCAACACCCACGCGTCCGGCAGTAGCAGCAGCGGGAG
CAACAGAGGCGGTAGTAGCAGGGGCGGCGGAAAGAGAAGCCGTAGAGGCG
GCAGCCCCGTCCTCATCGCCATCGCCATCACTACTCCCACCACTTACATA
CCCGGCAGTAGCTGCAGCAGCAACAGCAGCGGCGGCGGCGGCGGAGGTAG
CGGTCGCAGTAGAAGCGGCAGTGGCGGCAGCCCCATCCTTTTTCCTCGCC
AGGAGCTCTGACGATGATGGCGCCAACATGTTCGGTTCCGCTGCCGCCCG
AGCCGGAGCGGGAGCTCCTGAAGCACCGGCAGTAGCGGGAGAGCTTGTTT
CGTCTGTTCCGGAGCTGCTGATTTTGCCCGAGCCCCATTCACTGGATGGC
GGCCTGGATGGCGGCCTACCGGCTGTTCCAAACGAGAATGACGGAAGAGC
AGCAGCACCAACACCATCGACACCACTTCTCCCACCACTCACATGC
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