mRNA_Ecto-sp9_F_contig921.17385.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig921.17385.1
Unique NamemRNA_Ecto-sp9_F_contig921.17385.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Smr (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G092_ECTSI)

HSP 1 Score: 157 bits (397), Expect = 3.620e-48
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGRWG 228
            MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFA+LSEHSTG WG
Sbjct:   52 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAKLSEHSTGGWG 127          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 3.930e-43
Identity = 74/76 (97.37%), Postives = 74/76 (97.37%), Query Frame = 1
Query:    1 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGRWG 228
            MGALA RGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTG WG
Sbjct:  579 MGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGGWG 654          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR71_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.790e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LAE GL  +R++TG GHHSKGP N ARLLPAVE F    GY ++ V D+  GHVG + V
Sbjct:  943 LAEDGLELIRIVTGAGHHSKGPQNTARLLPAVEQFLRSEGYEYKSVVDRK-GHVGMLQV 1000          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.960e-12
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LAE GL +VR++TGTGHHS+GP N ARLLPAVE+F    GY    V D+  G+VG + V
Sbjct:  481 LAEDGLDTVRIVTGTGHHSRGPQNTARLLPAVEHFLRTEGYESESVADRK-GYVGMLQV 538          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW3_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 8.440e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ GL S+ ++TG+GHHSKGPT  ARLLPAVE F    GY F  V D+  G+VG + V
Sbjct:  466 LADDGLESIYLVTGSGHHSKGPTGNARLLPAVEQFLTAEGYRFSPVADRR-GYVGMLMV 523          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV24_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 1.160e-10
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ GL ++ ++TG+GHHSKGP   ARLLPA+E F    GY F  VPD   G+VG + V
Sbjct:  554 LADEGLETIYLVTGSGHHSKGPQGNARLLPAIEQFLAAEGYQFSSVPD-GRGYVGMLLV 611          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB56_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.600e-9
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+  + V+TG+GHHSKGP   ARLLPAVE F    GY F  V D   G VG + V
Sbjct:  535 LADEGVDEIYVVTGSGHHSKGPHGNARLLPAVERFLAAEGYQFTPVAD-GAGFVGMLLV 592          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Membrane (metallo-endopeptidase 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKZ9_PHYNI)

HSP 1 Score: 60.8 bits (146), Expect = 4.450e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY +  V D++ G VG + V
Sbjct:  281 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGMLLV 338          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: NEDD4-binding (protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C524_PHYNI)

HSP 1 Score: 60.8 bits (146), Expect = 4.910e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY +  V D++ G VG + V
Sbjct:  511 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGMLLV 568          
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Match: Uncharacterized (protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT)

HSP 1 Score: 60.5 bits (145), Expect = 6.730e-9
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY +  V D S G VG + V
Sbjct:  535 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGS-GFVGMLLV 592          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig921.17385.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
Smr3.620e-4897.37domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized3.930e-4397.37protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.790e-1257.63protein n=1 Tax=Albugo candida TaxID=65357 RepID=A... [more]
Uncharacterized6.960e-1257.63protein AlNc14C400G11359 n=1 Tax=Albugo laibachii ... [more]
Uncharacterized8.440e-1155.93protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
Uncharacterized1.160e-1052.54protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized3.600e-952.54protein n=2 Tax=Peronospora effusa TaxID=542832 Re... [more]
Membrane4.450e-950.85metallo-endopeptidase 1 n=1 Tax=Phytophthora nicot... [more]
NEDD4-binding4.910e-950.85protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0... [more]
Uncharacterized6.730e-952.54protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig921contigEcto-sp9_F_contig921:10002..10701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog653948.CCA26658
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_000370.1
Exons2
Model size231
Cds size231
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930995.36205-CDS-Ecto-sp9_F_contig921:10001..101481622930995.36205-CDS-Ecto-sp9_F_contig921:10001..10148Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig921 10002..10148 -
1692278985.0591502-CDS-Ecto-sp9_F_contig921:10001..101481692278985.0591502-CDS-Ecto-sp9_F_contig921:10001..10148Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig921 10002..10148 -
1622930995.3834648-CDS-Ecto-sp9_F_contig921:10617..107011622930995.3834648-CDS-Ecto-sp9_F_contig921:10617..10701Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig921 10618..10701 -
1692278985.0701442-CDS-Ecto-sp9_F_contig921:10617..107011692278985.0701442-CDS-Ecto-sp9_F_contig921:10617..10701Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig921 10618..10701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig921.17385.1prot_Ecto-sp9_F_contig921.17385.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig921 10002..10701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig921.17385.1

>prot_Ecto-sp9_F_contig921.17385.1 ID=prot_Ecto-sp9_F_contig921.17385.1|Name=mRNA_Ecto-sp9_F_contig921.17385.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=77bp
MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVP
DQSTGHVGAIDVQFAELSEHSTGRWG*
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mRNA from alignment at Ecto-sp9_F_contig921:10002..10701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig921.17385.1 ID=mRNA_Ecto-sp9_F_contig921.17385.1|Name=mRNA_Ecto-sp9_F_contig921.17385.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=700bp|location=Sequence derived from alignment at Ecto-sp9_F_contig921:10002..10701- (Ectocarpus species9 EcSCA_722f female)
ATGGGAGCGTTGGCGGAGAGGGGGCTGTGCAGCGTGAGAGTCCTGACCGG CACGGGACATCACAGCAAGGGACCCACCAACAAGGTAAAACACCAGGCTT GTGTCACTGGTGAGAGGAACTCTCCGGTCGCAGTCGGAAGTCGAATCGTG CGCTTCGTGCAGCAGGTGGTTTTCTGCCGGTGGTCGCGTGTGCCCGCTTT CGCTTGGTTGCTTTCTATTTTTCGAGGACAAATCTGCACGTGCGTCTCGG ACGGCGAAAGCGTTTTGATTTCCTGTGGGGTATCCCAGCATCAACTACAT TGGTTGTAGTCCAGGATTGTTGACACTGCACCCGTCCGTAGTTTGTGTTC GTACGGTTCGAGTTTTATTCAGCTCACTTTCTGCATTGCCAATTTCTCAA GTGATGATGCCGTACTACGGTATGTTGTCCATCCGGAACACCTCACGAGT GCTTCGACATCGAACAGCATTCGCTGATGAGTGCGGACATGATCACGCCC CCCTTCACCCGGCCGTGCGTGCATGCACTGCCGCACTTGAAACACGTAAC CAGGCGCGTCTTTTGCCAGCGGTGGAAAACTTTTGCTTGATTCGCGGTTA TCTCTTCAGAAAGGTACCGGATCAAAGCACCGGCCACGTCGGGGCGATCG ACGTCCAATTCGCGGAACTATCGGAACACTCGACAGGAAGATGGGGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig921:10002..10701-

>mRNA_Ecto-sp9_F_contig921.17385.1 ID=mRNA_Ecto-sp9_F_contig921.17385.1|Name=mRNA_Ecto-sp9_F_contig921.17385.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp9_F_contig921:10002..10701- (Ectocarpus species9 EcSCA_722f female)
ATGGGAGCGTTGGCGGAGAGGGGGCTGTGCAGCGTGAGAGTCCTGACCGG
CACGGGACATCACAGCAAGGGACCCACCAACAAGATGGGAGCGTTGGCGG
AGAGGGGGCTGTGCAGCGTGAGAGTCCTGACCGGCACGGGACATCACAGC
AAGGGACCCACCAACAAGGCGCGTCTTTTGCCAGCGGTGGAAAACTTTTG
CTTGATTCGCGGTTATCTCTTCAGAAAGGTACCGGATCAAAGCACCGGCC
ACGTCGGGGCGATCGACGTCCAATTCGCGGAACTATCGGAACACTCGACA
GGAAGATGGGGTTAAGCGCGTCTTTTGCCAGCGGTGGAAAACTTTTGCTT
GATTCGCGGTTATCTCTTCAGAAAGGTACCGGATCAAAGCACCGGCCACG
TCGGGGCGATCGACGTCCAATTCGCGGAACTATCGGAACACTCGACAGGA
AGATGGGGTTAA
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