mRNA_Ecto-sp9_F_contig10137.174.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp9_F_contig10137.174.1
Unique Name	mRNA_Ecto-sp9_F_contig10137.174.1
Type	mRNA
Organism	Ectocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)

Homology

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BLAST of mRNA_Ecto-sp9_F_contig10137.174.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX0_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 3.590e-63
Identity = 119/121 (98.35%), Postives = 121/121 (100.00%), Query Frame = 1

Query:   97 MDAAAIEQMGSGTQSDDDDMMSSGGRGIDGDDTAAWDGGEGRDFGDEDEEHGTAGNGRRGGDADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDH 459
            MDAAAIEQMGSGTQSDDDDMMSSGGRG+DGDDTA+WDGGEGRDFGDEDEEHGTAGNGRRGGDADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDH
Sbjct:    1 MDAAAIEQMGSGTQSDDDDMMSSGGRGVDGDDTASWDGGEGRDFGDEDEEHGTAGNGRRGGDADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDH 121

[Close]

BLAST of mRNA_Ecto-sp9_F_contig10137.174.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV9_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 7.550e-52
Identity = 108/126 (85.71%), Postives = 113/126 (89.68%), Query Frame = 1

Query:   85 VDINMDAAAIEQMGSGTQSDDDDMMSSGGRG-IDGDDTAAWDGGEGRDFGDEDEEHGTAGNGRRGGDADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDH 459
            ++INMDAAAIEQMGSGTQSD            I+GD+TAAWDGGEG DFGDEDEEHGTAGNGRRGG+ADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDH
Sbjct:    1 MEINMDAAAIEQMGSGTQSDXXXXXXXXXXXXIEGDNTAAWDGGEGHDFGDEDEEHGTAGNGRRGGNADGGEGDGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVRLDH 126

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp9_F_contig10137.174.1 vs.

BLAST of mRNA_Ecto-sp9_F_contig10137.174.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
Uncharacterized	3.590e-63	98.35	protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ...	[more]
Uncharacterized	7.550e-52	85.71	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp9_F_contig10137	contig	Ecto-sp9_F_contig10137:3371..4473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	227.3
Seed ortholog evalue	5e-57
Seed eggNOG ortholog	2880.D7FGX0
Preferred name	NOL6
KEGG ko	ko:K08018,ko:K14544
KEGG Pathway	ko03008,ko04010,ko04015,ko04530,map03008,map04010,map04015,map04530
GOs	GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000462,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030628,GO:0030684,GO:0030686,GO:0031503,GO:0031974,GO:0031981,GO:0032040,GO:0032545,GO:0032991,GO:0033036,GO:0034456,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0036002,GO:0042254,GO:0042274,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0089701,GO:0090304,GO:0097064,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.	tRNA export from nucleus
EggNOG OGs	KOG2054@1,KOG2054@2759
COG Functional cat.	J
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03009
Hectar predicted targeting category	mitochondrion
Exons	2
Model size	462
Cds size	459
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928207.6723723-CDS-Ecto-sp9_F_contig10137:3370..3608	1622928207.6723723-CDS-Ecto-sp9_F_contig10137:3370..3608	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10137 3371..3608 +
1692277795.2927606-CDS-Ecto-sp9_F_contig10137:3370..3608	1692277795.2927606-CDS-Ecto-sp9_F_contig10137:3370..3608	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10137 3371..3608 +
1622928207.6849785-CDS-Ecto-sp9_F_contig10137:4251..4472	1622928207.6849785-CDS-Ecto-sp9_F_contig10137:4251..4472	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10137 4252..4472 +
1692277795.304324-CDS-Ecto-sp9_F_contig10137:4251..4472	1692277795.304324-CDS-Ecto-sp9_F_contig10137:4251..4472	Ectocarpus species9 EcSCA_722f female	CDS	Ecto-sp9_F_contig10137 4252..4472 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp9_F_contig10137.174.1	prot_Ecto-sp9_F_contig10137.174.1	Ectocarpus species9 EcSCA_722f female	polypeptide	Ecto-sp9_F_contig10137 3371..4472 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp9_F_contig10137:3371..4473+
coding sequence from alignment at Ecto-sp9_F_contig10137:3371..4473+

protein sequence of mRNA_Ecto-sp9_F_contig10137.174.1

>prot_Ecto-sp9_F_contig10137.174.1 ID=prot_Ecto-sp9_F_contig10137.174.1|Name=mRNA_Ecto-sp9_F_contig10137.174.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=153bp
CSLWVSSRITLRVRRTTCGLVAAAAATGVDINMDAAAIEQMGSGTQSDDD
DMMSSGGRGIDGDDTAAWDGGEGRDFGDEDEEHGTAGNGRRGGDADGGEG
DGAPPQKRARDAKYAIPTMEEASLLRETEGKLFEGNLLRLEVEELLGEVR
LDH

mRNA from alignment at Ecto-sp9_F_contig10137:3371..4473+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp9_F_contig10137.174.1 ID=mRNA_Ecto-sp9_F_contig10137.174.1|Name=mRNA_Ecto-sp9_F_contig10137.174.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1103bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10137:3371..4473+ (Ectocarpus species9 EcSCA_722f female)
TGCAGCCTGTGGGTGTCATCGAGGATAACCCTTAGAGTACGTCGAACAAC
CTGCGGTCTTGTTGCAGCGGCGGCGGCTACGGGCGTGGACATAAACATGG
ATGCGGCTGCTATTGAACAGATGGGCAGCGGAACGCAGAGCGATGACGAT
GACATGATGTCGTCGGGTGGTAGAGGGATCGATGGCGACGACACCGCTGC
CTGGGACGGAGGAGAAGGACGTGATTTCGGAGACGAAGGTACCACAACAG
CTCCACGCTAAGCTGTAAGCTACGAAATTGTTGTGGGTGGCGAGCAATGT
CGTTGTGTGTCGTAAGCGGGACTCGCTGCGGTTGCTGCCTATTGTCGACA
CCGGCTCTTTTTTTCGCGGCCCAGAGCCGCCGTCTCCATCACCATCCTCA
GCGTTGCGGCGGAGGGAGAGAGGGAGAGCAGCAGTACAGCCAAACGTAGA
GACGCTGTGGTTTCGGATGTCGCCTAAGTTATGACGATGTGGGTATAAAA
CCGGCAATGGTGTAGCGTTTGTGTGTAATGCAGCAGTTATGCGTGAGGGA
AACACCAACATTTCACAGCCTCGCCGTGTCCGGGCGGACACAGCTTGAAT
TCCCGTGTATTGGCGGCGATCAAGCACACCGCCAGGTAGCGCCATCCTCG
CTCTGGCATGCGGAGGAGGAGCGCAACCTCTGCCCACCGGTGCACCTTCC
TCAGAGCCTGGGCACTGATGCCACTGAATCGACGTTTTGCTCTCCCGTCT
ACTATCATACGGACGTGGAAATGTAAATATTGTCGGTCCTCTGCTGCGAG
AACAACCGCGATCGTCCTTGTCACGGCGCTGCCATTCTGAACCAATCAAT
CATTTGCGTCGAACGTTGCCTTGTGGAACAGACGAGGAGCACGGCACCGC
AGGCAACGGCAGACGTGGGGGCGACGCTGACGGCGGCGAAGGCGATGGGG
CACCCCCGCAGAAGAGGGCGCGGGACGCCAAGTACGCGATCCCCACCATG
GAGGAGGCGTCCCTGTTGAGGGAGACAGAGGGGAAGCTGTTCGAGGGCAA
CCTCTTGAGGCTGGAGGTGGAGGAGCTGCTGGGAGAGGTCAGGCTGGATC
ACG

Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10137:3371..4473+

>mRNA_Ecto-sp9_F_contig10137.174.1 ID=mRNA_Ecto-sp9_F_contig10137.174.1|Name=mRNA_Ecto-sp9_F_contig10137.174.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10137:3371..4473+ (Ectocarpus species9 EcSCA_722f female)
TGCAGCCTGTGGGTGTCATCGAGGATAACCCTTAGAGTACGTCGAACAAC
CTGCGGTCTTGTTGCAGCGGCGGCGGCTACGGGCGTGGACATAAACATGG
ATGCGGCTGCTATTGAACAGATGGGCAGCGGAACGCAGAGCGATGACGAT
GACATGATGTCGTCGGGTGGTAGAGGGATCGATGGCGACGACACCGCTGC
CTGGGACGGAGGAGAAGGACGTGATTTCGGAGACGAAGTGCAGCCTGTGG
GTGTCATCGAGGATAACCCTTAGAGTACGTCGAACAACCTGCGGTCTTGT
TGCAGCGGCGGCGGCTACGGGCGTGGACATAAACATGGATGCGGCTGCTA
TTGAACAGATGGGCAGCGGAACGCAGAGCGATGACGATGACATGATGTCG
TCGGGTGGTAGAGGGATCGATGGCGACGACACCGCTGCCTGGGACGGAGG
AGAAGGACGTGATTTCGGAGACGAAGACGAGGAGCACGGCACCGCAGGCA
ACGGCAGACGTGGGGGCGACGCTGACGGCGGCGAAGGCGATGGGGCACCC
CCGCAGAAGAGGGCGCGGGACGCCAAGTACGCGATCCCCACCATGGAGGA
GGCGTCCCTGTTGAGGGAGACAGAGGGGAAGCTGTTCGAGGGCAACCTCT
TGAGGCTGGAGGTGGAGGAGCTGCTGGGAGAGGTCAGGCTGGATCACACG
AGGAGCACGGCACCGCAGGCAACGGCAGACGTGGGGGCGACGCTGACGGC
GGCGAAGGCGATGGGGCACCCCCGCAGAAGAGGGCGCGGGACGCCAAGTA
CGCGATCCCCACCATGGAGGAGGCGTCCCTGTTGAGGGAGACAGAGGGGA
AGCTGTTCGAGGGCAACCTCTTGAGGCTGGAGGTGGAGGAGCTGCTGGGA
GAGGTCAGGCTGGATCAC