mRNA_Ecto-sp9_F_contig908.17265.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig908.17265.1
Unique NamemRNA_Ecto-sp9_F_contig908.17265.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig908.17265.1 vs.
Match: HECT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 4.990e-41
Identity = 83/86 (96.51%), Postives = 84/86 (97.67%), Query Frame = 1 
Query:    1 AEGQAGGGELSDLIRMVSTIESQVGSLEEAMDPRGSLTELAGAYGRQVYESLGSMLGQARAATSEVAERVQTLSGQEDVEVPQEVR 258
            AEGQ+G GELSDLIRMVSTIESQVGSLEEAMDPRGSLTELAGAYGRQVYESLGSMLGQARAATSEVAERVQTLSGQEDVEVP EVR
Sbjct:   41 AEGQSGAGELSDLIRMVSTIESQVGSLEEAMDPRGSLTELAGAYGRQVYESLGSMLGQARAATSEVAERVQTLSGQEDVEVPLEVR 126
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BLAST of mRNA_Ecto-sp9_F_contig908.17265.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC8_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 8.960e-33
Identity = 69/75 (92.00%), Postives = 69/75 (92.00%), Query Frame = 1 
Query:    1 AEGQAGGGELSDLIRMVSTIESQVGSLEEAMDPRGSLTELAGAYGRQVYESLGSMLGQARAATSEVAERVQTLSG 225
            AEGQAGGGELSDLIR VSTIESQVGSLEEAMDPRGSLTELAGAYGRQ YESLGSMLGQAR ATSEVAERVQ   G
Sbjct:   41 AEGQAGGGELSDLIRTVSTIESQVGSLEEAMDPRGSLTELAGAYGRQGYESLGSMLGQARTATSEVAERVQASGG 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig908.17265.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
HECT4.990e-4196.51domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized8.960e-3392.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig908contigEcto-sp9_F_contig908:419..3198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.5
Seed ortholog evalue3e-27
Seed eggNOG ortholog2880.D7FWC8
KEGG koko:K20877
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsCOG5021@1,KOG0941@2759
EC2.7.11.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHECT
Ec32 orthologEc-25_000920.1
Exons4
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig908.17265.1prot_Ecto-sp9_F_contig908.17265.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig908 421..3198 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930975.9227078-CDS-Ecto-sp9_F_contig908:420..4651622930975.9227078-CDS-Ecto-sp9_F_contig908:420..465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 421..465 -
1692278975.8426373-CDS-Ecto-sp9_F_contig908:420..4651692278975.8426373-CDS-Ecto-sp9_F_contig908:420..465Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 421..465 -
1622930975.9430723-CDS-Ecto-sp9_F_contig908:1081..11531622930975.9430723-CDS-Ecto-sp9_F_contig908:1081..1153Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 1082..1153 -
1692278975.854574-CDS-Ecto-sp9_F_contig908:1081..11531692278975.854574-CDS-Ecto-sp9_F_contig908:1081..1153Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 1082..1153 -
1622930975.9625635-CDS-Ecto-sp9_F_contig908:1828..19001622930975.9625635-CDS-Ecto-sp9_F_contig908:1828..1900Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 1829..1900 -
1692278975.8647058-CDS-Ecto-sp9_F_contig908:1828..19001692278975.8647058-CDS-Ecto-sp9_F_contig908:1828..1900Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 1829..1900 -
1622930975.9780042-CDS-Ecto-sp9_F_contig908:3129..31981622930975.9780042-CDS-Ecto-sp9_F_contig908:3129..3198Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 3130..3198 -
1692278975.8742385-CDS-Ecto-sp9_F_contig908:3129..31981692278975.8742385-CDS-Ecto-sp9_F_contig908:3129..3198Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig908 3130..3198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig908.17265.1

>prot_Ecto-sp9_F_contig908.17265.1 ID=prot_Ecto-sp9_F_contig908.17265.1|Name=mRNA_Ecto-sp9_F_contig908.17265.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=86bp
AEGQAGGGELSDLIRMVSTIESQVGSLEEAMDPRGSLTELAGAYGRQVYE
SLGSMLGQARAATSEVAERVQTLSGQEDVEVPQEVR
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mRNA from alignment at Ecto-sp9_F_contig908:419..3198-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig908.17265.1 ID=mRNA_Ecto-sp9_F_contig908.17265.1|Name=mRNA_Ecto-sp9_F_contig908.17265.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2780bp|location=Sequence derived from alignment at Ecto-sp9_F_contig908:419..3198- (Ectocarpus species9 EcSCA_722f female)
GCGGAAGGGCAGGCCGGCGGCGGGGAGCTTTCCGACCTCATTAGGATGGT
CTCGACCATCGAGTCCCAGGTGCGGGTGGCATAAACGCACCGACGTGTGC
AGCCTCCTGATAGGAGACAGGCCGTTGTTACAAATGCTGCATAACAACGT
GTTCGGCTGGATCAGGGCTTCGTCATACCCGCAATGCGTTGACCGTAACA
GTCGCTTGAGTTCAACATTACGGAGTCAGTGCTGTTTTTGGCCTTTTTCC
GGGCCTCTGTTTGGAGCCCGATGGAGGAAGAAAACTGTCTTTGGTAACTT
GTACCATAACGTGAGATTGGGGGCGTGTCTACGATTGTGAGTGCCATTTG
TGTTCTTAGATGGTATTTCTTCGGAACACCGTCGGCTGAGTTGGTCGAGC
AGCAATAGCGTCAGCGCTAGCCGCAAGAAACCACCGAACGATTAGGATCA
TAGTGGGCGGTATGTCGGCGGGGTGAGCAGGGAGCGTCCGGATTCAGCGT
GGTGGCACACGAAGAGGACCGAACTACAATACCGCTGGTTGCAAGACCTA
CCGCACCCTTTGGACCGATTTTCAAAGCCTGAGAACTCTGCAGTAACAGC
AGTGACGGTGCCGAAAACGGGGGCCATGGAACAATCCCGTCGAGAGCGCT
CGAAAACGTGTCGTTTGATGTGAGCGTCCTCTTCGTCGCAGAGAATACTC
GAGCTCTATCAATCGGTCCAGGGGGTGTGTTATCTTACGTCATGCCACCT
ACGGTAGACTCCGCGGCTTTCGAAGGTTGCCGGCCGCACCCGCGGGCCGG
CGACGGCGGCGGGGTACCCAAGGATTGTCGACCAACCCATCACATGCTGA
CGGAGGCTGATAGAAATCGGTTTTAGTGGCGATTCGGCGCCTTATTCTCC
AAACCAAAGGGGTTCGCCCGCCGCCGGAACCCCGCTCCGCCTGTTATTGG
CACTTGTGCAGCCGAAAGTGTCTTCTCTTCCCCCTTGTCTGGCGCGTTGC
CAGCCCTGTGCTAGATGGGTTTCGTCTCTTGTGGTGTTTGGGAACAAACC
CCTCGCATGTGGGCGAACGCGGAAGTGTTTTCTAGAACTTAGTTTGCTAT
TGACAGCCGGTGGGCGGTTGTAGTTTAGCGGTGAAACGAGGAGAAACAAC
GGAAAATAATAAGGACCATGCAAGAGAGGACGGTTCCCGCTTTTTCACAA
GTACATGTTTGTGATGTGTGTCTTTCGATAAATCTTGAGCCACCGAGATG
AACACGGCATCCCTCGCACCTGTGTTGTTGTTGTTGTTGTTGCGTCAGGT
GGGGTCGTTAGAGGAAGCCATGGATCCTCGGGGATCACTGACCGAGCTTG
CGGGGGCCTACGGCCGACAGGTGAGGGTGCGGTACCCCCAGGACACGGGA
TCATTCCTGAGACACGACTGTCTCTGCCTCTGTCTGTCTGTCTGTCTGTC
TGTCTGTCTGTCTGTCTGTCCTCTCTCTCTTGTTTCTCTCTCTTGCCTTT
TTTTCTTGCTATGTAATCCCAGTTGTTGCCGGTGCTTTGCAGCTACAATT
TCCAGCTACAGTAGATCGTCTCACCGTCTTTCCTTTCTCGACCGAAGAGC
AGCTCAAGCCCCGACCCCTTCATTATTTTTCTTGGAAGAGAAGAAGGTTG
AACAGCAGCAGGATGTGCGTTGTTGTTTTGCTGGTCTCTCTTTGTCGTGA
GTGAGACCATCACGGGGGATGCCACGGTAACCGCGGCCTGCGTTTCATGT
TTCCAAGTGTCTTAAGGACCAAAGTTTGCTTTCCAATACGAACGGAACGT
GGTTTGACACCCGTGTAGGAGTTCTTCCCACACCACCCTGGTCTTCGGCA
CTACCCTCGGAACTCGTGATCTCGCTGGATGTTTCGTAAGCCACCATTGG
CAAGGATTTTGCTCCGGAGATCGATGTGCGAGATCGTTTTCTGCCGTGCT
GTTCGAGAGGAGCACGTTGTACAAGTCGACCCTAATAAAATCGGGCTTGG
TAGGTGGTATATAAGCTGACGTGATGATGACGTTATATCCGGCAGGTGTA
CGAGTCCCTGGGGTCCATGCTGGGGCAGGCTCGAGCAGCGACGTCCGAAG
TGGCGGAGAGGGTTCAGGTGGGGGGTTGTTGTTATCGTCGTCGTCGCCGT
TGTTGTGGTTGTCGTTGTTGTTTTGTGTTGGTATTGGTGTTGTTGTTGCT
GTTGGTGTGGGTTGTTTGTAACGGTCGTCGTCCATTTTTCTATCCCCTCC
CCCTCTACTCTCGTACCTGGTATCCATCTAACCCTCATGTCCATGGCCAC
ACTCGTTGCACTGGTCACACCGCACACGACATGTGTCAGAGAATCAGAAA
AAAGCCCTTCCTAGTTCGTCCAAATCTGTGGAAAGAGGATCTCGGCATGC
ATATGTCATCCTACCTTTACACATATAGCGTGGAGGGTATGTACCCAAAT
ATCACTGCGACTTCCCGGAACCCCTTCGTAGTCTTCTTCGACTACATGTA
TGTATCCGGTTTAACGTGGCCCATCCATCTCCTCTTCGATTCTTCATTGT
ATGGAGTACGTCCCTCCCTTTTTGGGGTATGTAGCTGGCGCGTGACCACA
GAAGGGGTCCGCTTCAGCTGGACCCCAGCGGGGATGTTTGGAAGGATTGT
CAATACCTTGGTAACCTCTGTCGTGTCTGTTGCCATGTTGTATTGAGCGG
GATCGATCTGTTCGTCGCCGTTGCCGTTCCCAGACGCTCTCGGGACAGGA
GGACGTCGAGGTGCCACAAGAAGTTCGCCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig908:419..3198-

>mRNA_Ecto-sp9_F_contig908.17265.1 ID=mRNA_Ecto-sp9_F_contig908.17265.1|Name=mRNA_Ecto-sp9_F_contig908.17265.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp9_F_contig908:419..3198- (Ectocarpus species9 EcSCA_722f female)
GCGGAAGGGCAGGCCGGCGGCGGGGAGCTTTCCGACCTCATTAGGATGGT
CTCGACCATCGAGTCCCAGGCGGAAGGGCAGGCCGGCGGCGGGGAGCTTT
CCGACCTCATTAGGATGGTCTCGACCATCGAGTCCCAGGTGGGGTCGTTA
GAGGAAGCCATGGATCCTCGGGGATCACTGACCGAGCTTGCGGGGGCCTA
CGGCCGACAGGTGGGGTCGTTAGAGGAAGCCATGGATCCTCGGGGATCAC
TGACCGAGCTTGCGGGGGCCTACGGCCGACAGGTGTACGAGTCCCTGGGG
TCCATGCTGGGGCAGGCTCGAGCAGCGACGTCCGAAGTGGCGGAGAGGGT
TCAGGTGTACGAGTCCCTGGGGTCCATGCTGGGGCAGGCTCGAGCAGCGA
CGTCCGAAGTGGCGGAGAGGGTTCAGACGCTCTCGGGACAGGAGGACGTC
GAGGTGCCACAAGAAGTTCGCACGCTCTCGGGACAGGAGGACGTCGAGGT
GCCACAAGAAGTTCGC
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