mRNA_Ecto-sp9_F_contig901.17203.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig901.17203.1
Unique NamemRNA_Ecto-sp9_F_contig901.17203.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLR2_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 3.650e-121
Identity = 196/200 (98.00%), Postives = 198/200 (99.00%), Query Frame = 2 
Query:  341 MGNMPVVDVGMRKVRVKRLLSEGGYAHVYKAVDEVNKKDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            MGNMPVVDVG RKVRVKRLLSEGGYAHVYKAVDEVNKKDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKAD EIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKE+Q+ANEDIRRNTT
Sbjct:    1 MGNMPVVDVGTRKVRVKRLLSEGGYAHVYKAVDEVNKKDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADNEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKELQLANEDIRRNTT 200
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL9_9PHAE)

HSP 1 Score: 311 bits (797), Expect = 1.010e-92
Identity = 164/200 (82.00%), Postives = 172/200 (86.00%), Query Frame = 2 
Query:  341 MGNMPVVDVGMRKVRVKRLLSEGGYAHVYKAVDEVNKKDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            MGNMPVVDVG RKVRVKRLLSEG  A+VYKAVDEVNKKDFALKMVRIPR+RSG+ AN EVAEMA VEQS+VRSLPNNHPNIVKFHDAGISK D+EIRYFILSEYCPSNVLKKMSGAADQG+LLPETEVLLIFRDTLMAV                 DNLLVGRDGLIKLCDFGSCSTQHKA+LS KE  IA+EDI RNTT
Sbjct:    1 MGNMPVVDVGTRKVRVKRLLSEGVRANVYKAVDEVNKKDFALKMVRIPRTRSGKPANGEVAEMAFVEQSMVRSLPNNHPNIVKFHDAGISKTDSEIRYFILSEYCPSNVLKKMSGAADQGNLLPETEVLLIFRDTLMAV-----------------DNLLVGRDGLIKLCDFGSCSTQHKAFLSRKEALIAHEDILRNTT 183
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: Kinase-like (domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI7_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.280e-57
Identity = 101/196 (51.53%), Postives = 140/196 (71.43%), Query Frame = 2 
Query:  359 VDVGMRKVRVKRLLSEGGYAHVYKAVDEVNKKDFALKMVRIPRSRSG-QLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAA-DQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            +D+G R V++K  ++EGG  +VYK  DE+  K++ALK+VR+ R R G  + +EE AEMA +EQ+VV+ L   HPNIV+  D G +  D+E+RY ILSE+CP +VL  +S A       LPE +++ I RDTLMA+L++HS+ PPIAHRDLKV+NLL+G DG  KLCDFGSCS  H+A+   ++  +A E+IRR TT
Sbjct:    9 LDLGGRVVKIKCQIAEGGCGYVYKGEDELG-KEYALKIVRVARERGGGPVVDEEAAEMASLEQTVVKRLCP-HPNIVEAFDCGTTWEDSEVRYHILSEFCPRSVLGMLSDARRGPAGHLPERDIMWILRDTLMALLHMHSQSPPIAHRDLKVENLLIGADGRCKLCDFGSCSVTHRAFAGARDAALAKEEIRRRTT 202
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: Kinase-like (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQI3_9STRA)

HSP 1 Score: 184 bits (468), Expect = 5.340e-53
Identity = 88/194 (45.36%), Postives = 138/194 (71.13%), Query Frame = 2 
Query:  359 VDVGMRKVRVKRLLSEGGYAHVYKAVDEVNKKDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGS-LLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNT 937
            + +G + +++K  + +GG+ HVY+  D+   KD+ALK+  +PR R+G +ANEE AE A +EQ++++ +   HPN+++  D+G+ K D EIRY IL EYCP  VL  ++ A    S  LPE +++LI RDTL A+ +LH++ PPIAHRDL+V+NLLV   G ++LC+FGSCS +H+++ + ++I +A E+IRR T
Sbjct:    9 LTIGHQTIKIKGQIGDGGHGHVYRGEDDAG-KDYALKVTWVPRDRNGAVANEEAAETASLEQTILKRICP-HPNVIEVLDSGMLKEDNEIRYHILIEYCPRTVLGHLTEARKAPSNYLPERDIMLILRDTLSALQHLHAQTPPIAHRDLRVENLLVDVRGRVRLCNFGSCSLRHRSFAASRDIALAKEEIRRRT 200
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: AP2-associated (kinase n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8Y9F5_SALSN)

HSP 1 Score: 139 bits (350), Expect = 1.560e-35
Identity = 77/196 (39.29%), Postives = 112/196 (57.14%), Query Frame = 2 
Query:  356 VVDVGMRKVRVKRLLSEGGYAHVYKAVDEVNK-KDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            V+D+G  KV+V+ L++EGG++ VY A D VN  K +ALK +         + N+E ++  V ++  V      HPN+V      +          +L EYC  +++  + G         E +VL IFRD   AV  +H + PPIAHRDLK +NLL+G DGL KLCDFGS ST HK +  P+E+ I  ++IR++TT
Sbjct:   19 VIDIGNFKVQVRNLIAEGGFSCVYLARDAVNGFKQYALKHI---------ICNDEESQELVTKEISVMKTLTGHPNVVTLLAHAVFDMGRTKEALLLMEYCEKSLVNVLEGRG--AGYFEEKQVLTIFRDICTAVFVMHCQTPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKHTT 203
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: Protein (kinase domain-containing protein n=2 Tax=Capsicum TaxID=4071 RepID=A0A2G3DGJ4_CAPCH)

HSP 1 Score: 139 bits (351), Expect = 1.700e-35
Identity = 81/207 (39.13%), Postives = 119/207 (57.49%), Query Frame = 2 
Query:  326 LPKAEMG-NMPVVDVGMRKVRVKRLLSEGGYAHVYKAVDEVN-KKDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            +PK + G     +D+G  KV V+  ++EGG++ VY A D ++  K +ALK + +         +EE  ++ + E SV++SL   HPNIV  H   I          ++ EYC  +++  +           E +VLLIFRD   AV  +H + PPIAHRDLK +NLL+G DGL KLCDFGS ST HK +  P+E+ I  ++IR++TT
Sbjct:    8 MPKEQTGLEGRTIDIGNLKVHVRNAIAEGGFSCVYLARDVLHGSKQYALKHIIVN--------DEESLDLVLKEISVMKSL-KGHPNIVTLHAHAILDVGRTKEALLVMEYCDQSLVSVLENRG--AGFFEEKQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLGADGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKHTT 203
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: Hypothetical (protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YG02_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.750e-35
Identity = 85/203 (41.87%), Postives = 119/203 (58.62%), Query Frame = 2 
Query:  341 MGNMPV-VDVGMRKVRVKRLLSEGGYAHVYKAVDEVN--KKDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            MGN  V + VG R VR+ +LL+EGGY+ +Y+A  E N  +K + LK +R+P+  +      E+  +A  EQ + R L   HPN+V+F    +     +  Y+IL E C  NV + +     Q   L +  VL I RDTL+A+ +LH R  PIAHRD+KV+N+LVG DG  KLCDFGS +T H       +I +  E+I RNTT
Sbjct:    1 MGNSAVTLSVGNRHVRIGKLLAEGGYSFIYEAECEENGGRKCYILKRMRVPKDHA------ELNRIAGHEQKICRQLAP-HPNVVEFFGTHVVDIGRDWDYYILMEACRGNVAELVHAQYRQTRFLSQRNVLSILRDTLVALEFLHERPLPIAHRDIKVENMLVGYDGTYKLCDFGSATTVHHTVTDTAKIPLIAEEISRNTT 196
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ07_9STRA)

HSP 1 Score: 137 bits (345), Expect = 9.080e-35
Identity = 79/214 (36.92%), Postives = 125/214 (58.41%), Query Frame = 2 
Query:  341 MGNMPV-VDVGMRKVRVKRLLSEGGYAHVYKA-VDEVNK------------KDFALKMVRIPRSRSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            MGN  V + +G R VRV +LL+EGG+A +Y+A  D+               K + LK +R+P++      +E++ ++A  EQ + RSL   HPN+V+ +   I     +  Y+IL E C  NV + + G  ++ + L +  VL + RD  +A+ +LH R+PP+AHRD+KV+N+L+G  G+ K+CDFGS +T H       +I +  E+I RNTT
Sbjct:    1 MGNTAVTLSIGGRHVRVGKLLAEGGFAFIYEAETDDTTPGGPGPPGGDSAGKRYILKRMRVPKN------HEDLVKIAQKEQEICRSLAP-HPNVVEIYGTHIMDIGQDWDYYILMEACQGNVAELVLGHYNRTTYLQQDLVLRVLRDVALALEHLHEREPPLAHRDIKVENVLLGPGGVFKVCDFGSGTTTHYTVTDTSKIPLIAEEISRNTT 207
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: AP2-associated (protein kinase 1-like isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CD94B)

HSP 1 Score: 140 bits (353), Expect = 1.140e-33
Identity = 79/197 (40.10%), Postives = 118/197 (59.90%), Query Frame = 2 
Query:  356 VVDVGMRKVRVKRLLSEGGYAHVYKAVDEVN-KKDFALKMVRIPRSRSGQLAN-EEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            V+D+G  KV+V+ +++EGG++ VY A D ++  K +ALK +         + N EE+ E+ + E SV++SL   HPNIV  +   I          +L EYC  +++  +           E ++L+IFRD   AV  +H + PPIAHRDLK +NLL+G DGL KLCDFGS ST HK +  P+E+ I  ++IR++TT
Sbjct:   19 VIDIGNFKVQVRNVIAEGGFSSVYSARDAIHGSKQYALKHI---------ICNDEELLELVMKEISVMKSL-KGHPNIVTLYAHTIFDLGRTKEALLLMEYCEKSLVNVLENRG--AGFFEEKQILVIFRDVCNAVFAMHCQTPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKHTT 203
[Close]
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Match: probable (serine/threonine-protein kinase DDB_G0280111 isoform X1 n=2 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CD099)

HSP 1 Score: 140 bits (352), Expect = 1.580e-33
Identity = 82/208 (39.42%), Postives = 120/208 (57.69%), Query Frame = 2 
Query:  326 LPKAEMG-NMPVVDVGMRKVRVKRLLSEGGYAHVYKAVDEVN-KKDFALKMVRIPRSRSGQLAN-EEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFILSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIAHRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT 940
            +PK + G     +D+G  KV+V+  ++EGG+++VY A D ++  K +ALK +         + N EE  E+ + E SV++SL   HPNIV  H   I          +L EYC  +++  +           E ++L IFRD   AV  +H + PPIAHRDLK +NLL+G DGL KLCDFGS ST HK +  P+E+ I  ++IR++TT
Sbjct:    8 MPKEQNGLEGRTIDIGNFKVQVRNAIAEGGFSYVYLARDAIHVSKQYALKHI---------ICNDEESLELVMKETSVMKSL-KGHPNIVTLHAHTILDMGRTKEALLLMEYCEKSLVNVLESRG--AGFFEEKQILQIFRDVCNAVFAMHCKTPPIAHRDLKAENLLLGSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKHTT 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig901.17203.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.650e-12198.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.010e-9282.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Kinase-like1.280e-5751.53domain-containing protein (Fragment) n=1 Tax=Tribo... [more]
Kinase-like5.340e-5345.36domain-containing protein n=1 Tax=Tribonema minus ... [more]
AP2-associated1.560e-3539.29kinase n=1 Tax=Salvia splendens TaxID=180675 RepID... [more]
Protein1.700e-3539.13kinase domain-containing protein n=2 Tax=Capsicum ... [more]
Hypothetical2.750e-3541.87protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=1... [more]
Hypothetical9.080e-3536.92protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=... [more]
AP2-associated1.140e-3340.10protein kinase 1-like isoform X1 n=2 Tax=Olea euro... [more]
probable1.580e-3339.42serine/threonine-protein kinase DDB_G0280111 isofo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig901contigEcto-sp9_F_contig901:6681..10839 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.6
Seed ortholog evalue4.5e-106
Seed eggNOG ortholog2880.D8LLR2
Preferred nameATMRK1
KEGG koko:K04424,ko:K16799
KEGG Pathwayko04010,ko04341,map04010,map04341
KEGG ModuleM00678
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004485,GO:0004672,GO:0004674,GO:0004712,GO:0004713,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005886,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009791,GO:0009987,GO:0010154,GO:0010344,GO:0016020,GO:0016301,GO:0016310,GO:0016421,GO:0016740,GO:0016772,GO:0016773,GO:0016874,GO:0016885,GO:0018108,GO:0018193,GO:0018212,GO:0019538,GO:0022414,GO:0023052,GO:0031974,GO:0032501,GO:0032502,GO:0035556,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0140096,GO:1901564
EggNOG free text desc.clathrin-coated pit assembly
EggNOG OGsCOG0515@1,KOG0192@2759,KOG1989@1,KOG1989@2759
EC2.7.11.25
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-04_004810.2
Exons6
Model size940
Cds size600
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.7890453-CDS-Ecto-sp9_F_contig901:6680..67221622930965.7890453-CDS-Ecto-sp9_F_contig901:6680..6722Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 6681..6722 -
1692278971.2621405-CDS-Ecto-sp9_F_contig901:6680..67221692278971.2621405-CDS-Ecto-sp9_F_contig901:6680..6722Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 6681..6722 -
1622930965.81056-CDS-Ecto-sp9_F_contig901:7082..71851622930965.81056-CDS-Ecto-sp9_F_contig901:7082..7185Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 7083..7185 -
1692278971.2748013-CDS-Ecto-sp9_F_contig901:7082..71851692278971.2748013-CDS-Ecto-sp9_F_contig901:7082..7185Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 7083..7185 -
1622930965.8257978-CDS-Ecto-sp9_F_contig901:7681..77851622930965.8257978-CDS-Ecto-sp9_F_contig901:7681..7785Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 7682..7785 -
1692278971.284933-CDS-Ecto-sp9_F_contig901:7681..77851692278971.284933-CDS-Ecto-sp9_F_contig901:7681..7785Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 7682..7785 -
1622930965.8530893-CDS-Ecto-sp9_F_contig901:8128..83021622930965.8530893-CDS-Ecto-sp9_F_contig901:8128..8302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 8129..8302 -
1692278971.298323-CDS-Ecto-sp9_F_contig901:8128..83021692278971.298323-CDS-Ecto-sp9_F_contig901:8128..8302Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 8129..8302 -
1622930965.8791788-CDS-Ecto-sp9_F_contig901:8561..86481622930965.8791788-CDS-Ecto-sp9_F_contig901:8561..8648Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 8562..8648 -
1692278971.3090434-CDS-Ecto-sp9_F_contig901:8561..86481692278971.3090434-CDS-Ecto-sp9_F_contig901:8561..8648Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 8562..8648 -
1622930965.8942719-CDS-Ecto-sp9_F_contig901:10409..104991622930965.8942719-CDS-Ecto-sp9_F_contig901:10409..10499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 10410..10499 -
1692278971.3185015-CDS-Ecto-sp9_F_contig901:10409..104991692278971.3185015-CDS-Ecto-sp9_F_contig901:10409..10499Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig901 10410..10499 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930965.9087553-UTR-Ecto-sp9_F_contig901:10499..108391622930965.9087553-UTR-Ecto-sp9_F_contig901:10499..10839Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig901 10500..10839 -
1692278971.328651-UTR-Ecto-sp9_F_contig901:10499..108391692278971.328651-UTR-Ecto-sp9_F_contig901:10499..10839Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig901 10500..10839 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig901.17203.1prot_Ecto-sp9_F_contig901.17203.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig901 6681..10499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig901.17203.1

>prot_Ecto-sp9_F_contig901.17203.1 ID=prot_Ecto-sp9_F_contig901.17203.1|Name=mRNA_Ecto-sp9_F_contig901.17203.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=200bp
MGNMPVVDVGMRKVRVKRLLSEGGYAHVYKAVDEVNKKDFALKMVRIPRS
RSGQLANEEVAEMAVVEQSVVRSLPNNHPNIVKFHDAGISKADTEIRYFI
LSEYCPSNVLKKMSGAADQGSLLPETEVLLIFRDTLMAVLYLHSRDPPIA
HRDLKVDNLLVGRDGLIKLCDFGSCSTQHKAYLSPKEIQIANEDIRRNTT
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mRNA from alignment at Ecto-sp9_F_contig901:6681..10839-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig901.17203.1 ID=mRNA_Ecto-sp9_F_contig901.17203.1|Name=mRNA_Ecto-sp9_F_contig901.17203.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4159bp|location=Sequence derived from alignment at Ecto-sp9_F_contig901:6681..10839- (Ectocarpus species9 EcSCA_722f female)
CTCGCGGGGAAGTGCCGGGGGTCGGGGAAGGGGCGGAAGGACGCACACTA
GATTATACAGGAGGCCCGCCCTGCTTGCTGACAGGCTCGAGCATAAGGTG
GGGCTGCTCGTGGGGCCCGTGCGCTGAAGGGAGACGAGAGAGCGGCTGCC
GTCACGCCAATTTTGGTCGAGGAGCTTCAGCCTTTGTCCGGCGAAGGTCG
GGTGGGAATCCTTTTGGGGGTTCCGCGATTTAGAAGCCCTTCCTTTTCCT
TGCGGGTTGTGACGCTGAGGGGCCAAGAGGACAAAAGTTGGGAAGAGAAG
CGCACATCTTGTCGGCGTACGCCGTCTGCCCAAGGCCGAGATGGGAAATA
TGCCTGTCGTGGACGTGGGCATGAGGAAGGTTAGGGTGAAGCGCTTGCTT
TCGGAGGGCGGCTACGCTCACGTGTACAAGGTAAGCGCTGCCCGTGACGA
TTTTTTCCGCAATCCCCTTATACTGCCGTCGTTGTTGTTGGTGGTGGTGG
TGTCGGCGGTGCTCTTGTTGCGGCTTGTAGCATATGCCAGCTGCTCATTG
TGCTTAGGTGAAGGCGTTCTCCATGCTCTTCACCCTTCTCTTGTCACCGA
AATCAATATATAGACGCCAGCGCCACCAAGTAGCAGCAGGCTGCCTGCAG
GAGTCACCGTGCAAGTATTCAGAGTTGGGATCGACGCCCGATACGATCGA
AAAGGATGGCACCAGGCCGTGTCGGCGTGCCCGCGGGCGCTCTTCTCATA
TAACCAAACACCCAGTGCTGCGAATATGGATTCTCCGTCGAAAACAAGAA
CGACAACGTTCAGTCCGTTGTTGATTCCTTCTCCGACTCGAACAGGATGG
TGTTTTTTTCTGGATACGTACATAAGATGGGTAAAAATATGATGTATGAA
GGACGTCCTACTGTTTCTCCGCAAACTTGCTGGCATGGTGCTCGAATCGC
ATGAGGCGATGACACTTTTCATAGTCAGGAAAGCCTGCCGCCCTCTCTCG
CTTTTTGGTCATGGCTGTCGAACGAGTTGTATTGTTGGTTGCTTGGTCGC
CGGAGAGCTGGCTCTACATTACTGTCAGATACTTTTTGTGGAGAGGATGG
AATGCGGTACATGCAACTGGTGTGGATAGTTCTGAACCGTGTCCTGTTGC
TTCTATTTTATGTAGGAGCAAACGCGAAATAATGTTTGGTCACCAGCTAC
GCCGGTCCTTTTCAAAAAGGGGTCACGCCGCTTCTCATGGCCGCTCGTGT
GTTTAGATGTGAAAGAACAGCCGTGTGGTGAAGACTACGTACCTACAACT
TATGCGACGGCGTCAGCCTTCCCGGTGGGAAGGCCACCGATGTATACCAT
GTATAGAAACACACACATATGTGCTGTCTCGTGCGGGGTCTATCGCCCCG
GGTTATTGTAACTGCGGAAGTGCAGAGCCGTGAGTACACAGATGATTGAG
GGGAGAAGAGAGAGAGGATGCTGATCCCTTGTCGTGTTGATGGTTGAAAG
AAAACCAAGCAAGCGCCACAAGGGAAGAGGGAGGAAAGTAGCTCCGGTGT
TTGTGCCTTCCTCCTGTTTTGACCCCCGTCGAGTAAGGCATGAGGGGTGG
ATAGTTGGAGGTCACACCTGCTGTTTGGTGTGAACACGATTGAGTCTATC
AGAGAGGAACGTGCGCTGCAGACGGGGCACAATACACAACACTGCTGTGT
TGCCTTGTGGGCCTTCACCTGCCGATGTTTTTATGGACACGCCGACTTGT
GGGCTGCCCTCTACAGCAACGCCAACCAGCAGTAGCGTTATCGCTATCGG
CACCAACCTCGCCGTTGGTTGATAGGGGCCATTCGACATGCATTGGGTAT
CAATTTGACAAGCGTGCGGTACAGAGTAGACGTCGTACTTTTATCTGTTT
GGCGCCTGTGGCGCGACTAGTTGTTGTCTCGTAATGTTGGCACGCACACA
GTTTTCGGGTGTAAATTACATCCTCCCCATTGGCTGCAATGAGTATTCTC
TTTTGGTGATTTGTCTTGCTCTCGTGACGGTCGCGTGTGGTGTACCTGCT
GTTTTTTTGGTGTGTTAACTGCAGTGTTGTTTCTCTCCTCTGGCCTCTTA
TCGGTGGATGCGGTGCCTTTTTTTATTCTCCCCCTTTGCTGTGATTGCCT
TCGTCTCTCGCGCCCCAAACCCCCCCTGCCGCCTATGATAGGCGGTGGAC
GAAGTTAACAAGAAGGACTTTGCGCTTAAGATGGTGCGCATTCCGCGGTC
ACGTTCGGGGCAGCTGGCGAACGAAGAGGTGAGGCCGGCTAGATATGTCT
ACCGTCGTTAAACTCTGATGAAGGTTATGGCCGTGCGTATGGTATGAAGC
AAGGTATGGCGAGTGCTTGGTGTACGATTGCGACATGGCCGCACGGGGCC
TCCCCGGGCATTGACAAATGGATGAATTGGATCCCGGCATTAACAAGCGG
ATGAATTGGATCCCCCTCGCCGTTCCGCGCTAAAATTATATGCAGTGCTT
ATATCGGTTTCCGTGTGTTTTTGATCCCGTTGTACAGGTTGCCGAGATGG
CGGTGGTTGAGCAGTCGGTGGTCCGTTCTCTGCCCAACAACCACCCCAAC
ATCGTCAAGTTTCACGACGCCGGCATCAGCAAGGCCGACACCGAGATCCG
CTACTTCATCCTCTCGGAGTACTGCCCGAGCAACGTGCTCAAGAAGATGA
GCGGGGCTGCGGTGAGTCTTAGCCCCCTGCCTATGGTAGAGGTTCTTTCT
GTTTGTGGTTTCAAGCCGGAGAACTTGGGCTACATGTGGAGCCCTGAGTG
GAGTGCGTCAACGTTATGATCGTACTACATGACCGTGACTTTCGTGCTTA
CGCCCAAGCCGTTTTATTCCCGAGATGTTTCGAAGGAAAGTGGATGTCTC
TCATTGAGAAGGTCATTGAGAAGGTACGCCTATGAGCGTGAATTCGCCCA
TGGAAAATGATTGTAGTTGTGCCTTCACCGGAAAAAAAATGTGTTTGTGT
GTCATGATATTAACCCCCCTCCCTGCCCCTCGTGCGCCATCTATGCATCC
CCAGGACCAAGGCAGCCTCTTGCCGGAAACGGAAGTGCTGCTGATCTTTC
GAGATACTCTCATGGCGGTGCTGTACCTGCACAGCCGAGATCCACCGATC
GCGCACAGGCGAGTTTCCACCGCTTGTTTTCATGTTGTACGATTTCGATT
GGTCGATGTGGGCATGGGAACGTGCTTTAATTCCCAGATTTTGGTAAGGA
GTTTCGTGGGGTGGGGGCTTCTTGGCAATCGATCGATTAACGCGTGGGAA
AAGGTGGGGCGTTGGACCACTAAGTTGCCGGACGAGGCACCAGTGAAGCC
GTGCGGCAGCCCTGTTTTTGTCGGCAAGCCTCAACGCGACTGAAGCGTTG
GTTGCACGCCCCCCTTCTCCGTTTTTGTCTGGACGATAATCCGGTTAGTT
GGCACCATTTTTATTTTTCCGCTGCAGCCTCTTCCGCTCCTGGCCCCCCC
ACCTGCCATCACGCCCGTGTCTGGGGCCGTGCCGCGCCCGACTCGTTTCG
CTTCTGTGTTTCTTTCTTTTTCTTTTCGCTGTTATTGCGCGAATCGCCGC
TGAAGCTGGTCAATGTTTGCAATGTTTGGTTGCTTTGCTTTGCTGGTTCT
GCAGAGATTTGAAGGTGGACAACCTCCTCGTCGGGCGGGACGGCCTCATC
AAGCTCTGCGACTTCGGCAGCTGCAGCACGCAACACAAGGCCTATCTCTC
CCCGAAGGTTCGTGGATTGGAGTGTGCCACACACCTTTCGGAGACCGCGT
GAGGGTGTGTGGGTAGGATTGACGGGTGTCGGCCACGTTGCCACGGCATT
CTCGACGTACCTGCTCTCCTATCTTCATCACTTTCTCTGCTCTCGTCTAT
GTGTGTGCGTGATTGCGCTTCTCTCCTGAAGCTCGTCTGTGAGAGACTCT
TGTTGAGTTTATTTTTCTTCTTACAAATTGAAACGAAAACGCATCTCCGA
TACGCAGATAAGATAAGAGTCCAGAACTAACAATTACAGCAACGAATTCG
TAGTGGTATGCATGTGACCTATCGTGTGTTTGTTCCTTGTCTTCGACTGC
ACCGCGCCGAGAAACAGGAAATCCAGATAGCCAACGAAGACATCCGCAGG
AACACGACC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig901:6681..10839-

>mRNA_Ecto-sp9_F_contig901.17203.1 ID=mRNA_Ecto-sp9_F_contig901.17203.1|Name=mRNA_Ecto-sp9_F_contig901.17203.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1200bp|location=Sequence derived from alignment at Ecto-sp9_F_contig901:6681..10839- (Ectocarpus species9 EcSCA_722f female)
ATGGGAAATATGCCTGTCGTGGACGTGGGCATGAGGAAGGTTAGGGTGAA
GCGCTTGCTTTCGGAGGGCGGCTACGCTCACGTGTACAAGATGGGAAATA
TGCCTGTCGTGGACGTGGGCATGAGGAAGGTTAGGGTGAAGCGCTTGCTT
TCGGAGGGCGGCTACGCTCACGTGTACAAGGCGGTGGACGAAGTTAACAA
GAAGGACTTTGCGCTTAAGATGGTGCGCATTCCGCGGTCACGTTCGGGGC
AGCTGGCGAACGAAGAGGCGGTGGACGAAGTTAACAAGAAGGACTTTGCG
CTTAAGATGGTGCGCATTCCGCGGTCACGTTCGGGGCAGCTGGCGAACGA
AGAGGTTGCCGAGATGGCGGTGGTTGAGCAGTCGGTGGTCCGTTCTCTGC
CCAACAACCACCCCAACATCGTCAAGTTTCACGACGCCGGCATCAGCAAG
GCCGACACCGAGATCCGCTACTTCATCCTCTCGGAGTACTGCCCGAGCAA
CGTGCTCAAGAAGATGAGCGGGGCTGCGGTTGCCGAGATGGCGGTGGTTG
AGCAGTCGGTGGTCCGTTCTCTGCCCAACAACCACCCCAACATCGTCAAG
TTTCACGACGCCGGCATCAGCAAGGCCGACACCGAGATCCGCTACTTCAT
CCTCTCGGAGTACTGCCCGAGCAACGTGCTCAAGAAGATGAGCGGGGCTG
CGGACCAAGGCAGCCTCTTGCCGGAAACGGAAGTGCTGCTGATCTTTCGA
GATACTCTCATGGCGGTGCTGTACCTGCACAGCCGAGATCCACCGATCGC
GCACAGGACCAAGGCAGCCTCTTGCCGGAAACGGAAGTGCTGCTGATCTT
TCGAGATACTCTCATGGCGGTGCTGTACCTGCACAGCCGAGATCCACCGA
TCGCGCACAGAGATTTGAAGGTGGACAACCTCCTCGTCGGGCGGGACGGC
CTCATCAAGCTCTGCGACTTCGGCAGCTGCAGCACGCAACACAAGGCCTA
TCTCTCCCCGAAGAGATTTGAAGGTGGACAACCTCCTCGTCGGGCGGGAC
GGCCTCATCAAGCTCTGCGACTTCGGCAGCTGCAGCACGCAACACAAGGC
CTATCTCTCCCCGAAGGAAATCCAGATAGCCAACGAAGACATCCGCAGGA
ACACGACCGAAATCCAGATAGCCAACGAAGACATCCGCAGGAACACGACC
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