mRNA_Ecto-sp9_F_contig8959.17148.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPZ2_ECTSI) HSP 1 Score: 510 bits (1313), Expect = 3.360e-175 Identity = 252/257 (98.05%), Postives = 254/257 (98.83%), Query Frame = 3
Query: 3 RVHLDEFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 773
RVHLDEFT MAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQ+LGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPI+RPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQD IMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF
Sbjct: 103 RVHLDEFTTMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQKLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIIRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDGFIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 359
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY50_9STRA) HSP 1 Score: 184 bits (467), Expect = 2.770e-49 Identity = 101/252 (40.08%), Postives = 146/252 (57.94%), Query Frame = 3
Query: 18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVK-QDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPV 770
E++ +A SY+A AN +F V D + FQ Q VP++L+ PP G + +Y +D+ + + AED+A ++ +TG IVR ++ LV L V AA +PI+ L ++ ++RNK LWL SL +YT ISG +YDIIRNPAPF + Q I++FHPQ+N QFV EGFI G + L C LS I+L PK++++ R A+ +C + F+ LF VMSLY+SKN WY +
Sbjct: 93 EYSVLASSYRAHVANAGA--RNPPTFFTVVDVDGARATFQNYAFQQVPQLLYIPPY--SGQESKYVVDKKRAFGFTSKPTAEDLATWLHTQTGDRVHIVRSTTRAVLTLVLLAVGAACLARPIIHRLPTIINLLRNKMLWLLVSLGMYTCSISGMIYDIIRNPAPFFMNHQTGQIVFFHPQANSQFVVEGFIIGGLNLGCALSVIVLATYVPKIKHTQNRSTAIGICTMAFVCLFYTVMSLYRSKNKWYMRI 340
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXZ8_HETAK) HSP 1 Score: 167 bits (422), Expect = 6.520e-43 Identity = 94/254 (37.01%), Postives = 138/254 (54.33%), Query Frame = 3
Query: 12 LDEFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPF-MVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPV 770
LD F A SY+A +T+ G +++F D + FQR +TVP++ PP+ A Y D S +AE ARFV+ + GV F IVR ++ L LL A++PIL+ + LR++R K +W+ L +YT ISG +YDIIRNP P+ M Q I +FHPQSN QFVAEGFI G + + ++ IL+V + ++ + V +C +F++L ++SLY+ KN WY V
Sbjct: 90 LDAFKEAAASYKATLG---DTMRGDEIFFIAVDIDSAKNTFQRFQFKTVPQVFVIPPSTAGLP--AYTADPSASFLPDAHPEAEKFARFVERQLGVKFQIVRSNTRALMTLFALLGAMVAAVRPILNRIDFFLRLVRKKAIWMVVCLGLYTTSISGMIYDIIRNPPPYYMNHQTGQINFFHPQSNQQFVAEGFIIGFLNVGAAIALILMVTQMKRFKDPQNKSTFVGICYAVFVILLYTIISLYRVKNRWYMRV 338
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB15_9STRA) HSP 1 Score: 159 bits (403), Expect = 1.420e-41 Identity = 85/221 (38.46%), Postives = 130/221 (58.82%), Query Frame = 3
Query: 102 VADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVK-QDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWY 761
VAD N+ FQ LQ+VP++ HF P A G + Q+ M + AED+A+FV +KTG + I R + + L+ LL+ A++ ++N+ +LRV+R+ LWL SLLVYTF ISG ++DIIR+P PF++ Q ++F PQ N Q+V EGFI GI+ L G+++V +AP+++ RQ +F +LF+ +++Y KN WY
Sbjct: 2 VADVDLNRKVFQGYELQSVPQVAHFAPEAAPGAGAGWP--QADMMPVTKLFTAEDIAQFVGDKTGFRYTIYRSQFAARMALLALLLFLVGALRTAITNVALVLRVVRSPTLWLVVSLLVYTFSISGAIFDIIRSPPPFVISAQTRKPVYFSPQPNSQYVVEGFIVGILNLTTAFCGMVVVAIAPRIKARALRQTVTLAAAALFGLLFALSVTIYTWKNRWY 220
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTC6_PYTOL) HSP 1 Score: 147 bits (372), Expect = 8.860e-36 Identity = 90/255 (35.29%), Postives = 138/255 (54.12%), Query Frame = 3
Query: 18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQ-------HMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWY 761
EF +AESY +A+ +T +G+DVY+ + DF +NQ F G + P I + P E D G+ A + + +++ G+ +AE + +FVK+KTG F I R + + ++ +L V +++K ILSNL +L +R + LW+ SLL Y +SG VY IIR P + ++ I +FHP QFV EG I G +M ILL A L+N R A+ +C FL ++ +++S Y KN WY
Sbjct: 95 EFHTLAESYVSAKQVKVDTRDGLDVYYGIVDFDENQQVFGLHGFTSAPHIGYIGPDRTE-DTGKRAPSKVEIPTHDMYNVYQDGK-QAESIIKFVKQKTGFEFEIQRSKAFLYAVVGAVLSVFLISVKIILSNLNLVLDKLRRRRLWMTVSLLFYGLSVSGMVYCIIREPPAYTTERGGKIKFFHPAGRSQFVVEGLIVGAYDVMAAGFVILLSQWAVYLKNPVLRYSALMICMSGFLFMYRQMISAYMFKNRWY 347
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XXY0_HETAK) HSP 1 Score: 144 bits (362), Expect = 1.740e-34 Identity = 94/255 (36.86%), Postives = 137/255 (53.73%), Query Frame = 3
Query: 12 LDEFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPF-MVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLV-HVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKN---MWY 761
LD F A SY+A +T+ G +++F D + FQR +TVP++ PP+ A Y D S +AE ARFV+ + GV F IVR ++ L LL A++PIL+ + LR++R K +W+ L +YT ISG +YDIIRNP P+ M Q I +FHPQSN QFVAEGFI G + + ++ IL+V V P L +S + ++ V ++ +M + SL+ S N +WY
Sbjct: 90 LDAFKEAAASYKATLG---DTMRGDEIFFIAVDIDSAKNTFQRFQFKTVPQVFVIPPSTAGLP--AYTADPSASFLPDAHPEAEKFARFVERQLGVKFQIVRSNTRALMTLFALLGAMVAAVRPILNRIDFFLRLVRKKAIWMVVCLGLYTTSISGMIYDIIRNPPPYYMNHQTGQINFFHPQSNQQFVAEGFIIGFLNVGAAIALILMVTQVTPHLPSS-HSLLSSSVSFLVHIM-DTHFPSLHTSLNIVDLWY 337
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RX65_9ARCH) HSP 1 Score: 137 bits (346), Expect = 1.500e-32 Identity = 86/259 (33.20%), Postives = 137/259 (52.90%), Query Frame = 3
Query: 18 EFTAMAESY-QAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQS-----QHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVK-QDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 773
E +A SY + A+A E ++F D+ +Q F +VP + + P+ G G +D S + AE +A FV+++ GV+ I R + + +V + AL ++P++S + +LR++RN LW SL VYT ISG ++DIIR P + V Q +++F+P S QFVAEGF+ G + ++C LS IL VA +L+++ +R AV C ++F++ F V +LY KN WY F
Sbjct: 65 ELQLLASSYMKQAQARREEPR----IFFVRLDYEASQKTFAAYDAASVPVVFYIAPSSGLGGTG--GVDGSPPSARDRYQVPPDPSAEGLAGFVRDRAGVAVDIQRSKLLAYVFIVVAFSLLALLVRPLISFMPRILRLLRNSALWAVVSLGVYTCAISGLIFDIIRTPPLYHVNGQTGQLLFFYPHSGSQFVAEGFVIGGLNVLCALSLILASGVALRLKDAQHRTAAVLACLLVFIVSFRSVRALYVMKNNWYGARF 317
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5K1_9STRA) HSP 1 Score: 137 bits (345), Expect = 3.190e-32 Identity = 83/258 (32.17%), Postives = 133/258 (51.55%), Query Frame = 3
Query: 18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGR-----YAIDQSQHMHMAGQVKAED-MARFVKEKTGVSFPIVRPEPPVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYRPVF 773
EFT +AES AA+ + G+D++F V DF QNQ + G + P++++ P E D G+ + +Q + Q K+ D M +VK+KTGV ++R + I ++++ L ++ + +N ++ +R K +WLA S L Y +SG VY IIR P F +++ I +FHPQ QFV EG I G L + I++ A ++N R V + C FL+ + +++S Y KN WY F
Sbjct: 84 EFTVLAESVLAAQEPARD---GLDIFFGVVDFDQNQGAYGIHGFTSAPQLIYIGPDRTE-DAGKNLPTKIELPANQIYSVYTQGKSADAMINYVKDKTGVDAAVIRSKLFAYAIAASVMLILGLIVRSVYTNFDLVMNRLRRKRVWLAISFLFYGLSVSGMVYCIIREPPAFSQERNGKITFFHPQGRQQFVVEGLIVGGYDLTAAICVIVMSQFAVTIKNGPLRYVILSACLAGFLVAYRQMVSAYAFKNPWYESWF 337
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYS9_PYTIN) HSP 1 Score: 134 bits (337), Expect = 4.500e-29 Identity = 92/257 (35.80%), Postives = 133/257 (51.75%), Query Frame = 3
Query: 18 EFTAMAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAI--------DQSQHMHMAGQVKAEDMARFVKEKTGVSFPIVRPEP----PVMIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKN 752
EF +AESY A + + T +G+DVYF V DF QNQ F G + P I + P E D G+ A D H+ Q AE++ FV +KTG F I R + +++ LV LL++A K +L+NL +L +R K LW+ SLL Y +SG VY IIR P + +++ I +FHP QFV EG I G + +M ILL A L+ R A+ C F++++ ++++ Y SKN
Sbjct: 101 EFHTLAESYLAGKQASVTTRDGLDVYFGVVDFDQNQQVFGVYGFTSAPHIGYVGPDRNE-DTGKRAPSKVTFPAEDMYNIYHLGKQ--AENIVGFVTQKTGADFVIQRSKAFLYGLIVVTLVSLLIIA----KIVLANLDKVLARLRRKRLWMTVSLLFYGLSVSGMVYCIIREPPAYTTERNGKIKYFHPGGRSQFVVEGLIIGGLDVMAAGFVILLSQWAIYLQRPYLRYPAILACMAGFVVMYRQMIAAYISKN 350
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G8I4_9STRA) HSP 1 Score: 114 bits (284), Expect = 6.830e-24 Identity = 77/253 (30.43%), Postives = 120/253 (47.43%), Query Frame = 3
Query: 30 MAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPPALAEGDDGRYAIDQSQHMHMAGQVK-------AEDMARFVKEKTGVSFPIVRPEPPV-MIILVGLLVVAALAIKPILSNLGALLRVIRNKYLWLATSLLVYTFGISGGVYDIIRNPAPFMVKQDASIMWFHPQSNVQFVAEGFITGIMTLMCGLSGILLVHVAPKLRNSGYRQVAVCVCGVIFLMLFSKVMSLYKSKNMWYR 764
+ +S+ A + +G+ ++F ADF FQ + TVP I + P L E D A+ + + + A+D+ FV KTG ++ + + M++ GL V+ + N +L IR K LW+ SLL Y +SG VY IIRNPAP+ + Q I +FHP QFV EG I G + +M IL+ A L+ R A C F++++ +++ Y +KN WY+
Sbjct: 101 IVKSHSLAAQTELSSHDGLPIFFMEADFDSCSDIFQIHDVTTVPFIFYIAPNLDE--DTNEALPKKMEIRKRDMLSFGTSGRPADDLREFVARKTGFEIVLLESKTTLYMLVASGLAVIFVVGFIAA-RNTDFILSRIRRKALWMTVSLLFYGLSVSGMVYCIIRNPAPYHMTQKG-IQYFHPDGRSQFVYEGLIVGGLDIMAAFWIILMSQWAIYLKKPYVRLPATIFCAAGFIIMYKAMITCYSAKNRWYK 349 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8959.17148.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8959.17148.1 >prot_Ecto-sp9_F_contig8959.17148.1 ID=prot_Ecto-sp9_F_contig8959.17148.1|Name=mRNA_Ecto-sp9_F_contig8959.17148.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=249bp MAESYQAARANTPETLNGVDVYFFVADFGQNQLPFQRLGLQTVPKILHFPback to top mRNA from alignment at Ecto-sp9_F_contig8959:683..5035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8959.17148.1 ID=mRNA_Ecto-sp9_F_contig8959.17148.1|Name=mRNA_Ecto-sp9_F_contig8959.17148.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=4353bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8959:683..5035+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8959:683..5035+ >mRNA_Ecto-sp9_F_contig8959.17148.1 ID=mRNA_Ecto-sp9_F_contig8959.17148.1|Name=mRNA_Ecto-sp9_F_contig8959.17148.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1494bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8959:683..5035+ (Ectocarpus species9 EcSCA_722f female)back to top |