mRNA_Ecto-sp9_F_contig8931.17119.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8931.17119.1
Unique NamemRNA_Ecto-sp9_F_contig8931.17119.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Cytochrome (P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ4_ECTSI)

HSP 1 Score: 195 bits (495), Expect = 4.940e-62
Identity = 92/93 (98.92%), Postives = 93/93 (100.00%), Query Frame = 1
Query:    1 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKV 279
            LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDP+FMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKV
Sbjct:   77 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPSFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKV 169          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ84_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 6.350e-58
Identity = 92/94 (97.87%), Postives = 94/94 (100.00%), Query Frame = 1
Query:    1 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVN 282
            LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDP+FMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKV+
Sbjct:   77 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPSFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVS 170          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Cytochrome (P450 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7R3_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.840e-32
Identity = 48/93 (51.61%), Postives = 68/93 (73.12%), Query Frame = 1
Query:    1 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKV 279
            +P+LG A+ L    PWD +T W   YG +Y+F++FG   VVL+DP +++E+M TK+S +HKD+ FAY+PF+ L G GIVTSDGPKW  QR ++
Sbjct:   37 IPILGQAINLVTTPPWDLLTSWVSRYGPLYRFNMFGTQVVVLADPHYIREIMNTKLSYFHKDLVFAYKPFMPLFGDGIVTSDGPKWFHQRRQL 129          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Cytochrome (P450 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY07_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 1.970e-25
Identity = 45/90 (50.00%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    1 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQR 270
            LP  G A  + +G+PWDTM  WA+EYG+I +F LFG+  V ++DP  +K V++TK+S + KD ++ Y+PF+ LLG GIVTS+G  W +QR
Sbjct:   33 LPFFGHAFIMMKGSPWDTMAEWAREYGTICRFHLFGSEAVCIADPQALKTVLQTKLSSFKKDTEWTYKPFMVLLGNGIVTSEGQSWHRQR 122          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0F8_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.280e-25
Identity = 46/76 (60.53%), Postives = 61/76 (80.26%), Query Frame = 1
Query:   55 MTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVN 282
            MT WAQ YG IY+F LFG   V ++DP+ +K V+ T++SK+HKD DF YRPF+SLLGTG+VTS+GP WR+QR+ V+
Sbjct:    1 MTEWAQTYGPIYQFHLFGKRCVGVADPSLLKTVLNTEMSKFHKDRDFTYRPFMSLLGTGLVTSEGPLWRRQRSLVS 76          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Hypothetical (protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UBF2_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 5.170e-23
Identity = 44/94 (46.81%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVN 282
            LP+LG  + L    PWD  T+W  E   I +F++FG   VV+++P F+K + ++ I  Y KD+ F Y+PFL LLGTG+VTS+G  WRKQR  V+
Sbjct:   55 LPILGHGITLLRQTPWDLFTKWVVEISPIIRFNIFGEQFVVVAEPKFLKSIWQSNIRAYTKDMTFTYKPFLPLLGTGLVTSEGELWRKQRLLVS 148          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Hypothetical (protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1I6B7_9EUGL)

HSP 1 Score: 100 bits (250), Expect = 6.690e-23
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1
Query:    1 LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVN 282
            LP+ G AL LA   PWD M  W +  GS  +F++F    VV++DPA +K V +T +  Y KD DFAY PFL LLG+G+VTS+G  W+KQR  V+
Sbjct:   47 LPLFGQALTLATHTPWDVMQTWYENKGSPVRFTVFNKQMVVIADPADLKSVWQTNLKAYSKDRDFAYGPFLPLLGSGLVTSEGELWKKQRLMVS 140          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5M9T4_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.280e-23
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 LPVLGPALK--LAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVNE 285
            LP LG  L   LA   PWD M RW + +G IY+F L G   V +S PA +++V++T ++   KDVDFAY+PFLS+LGTGIVTS+G +W +QR  V +
Sbjct:  107 LPFLGNLLDFTLAGLTPWDLMVRWHRVHGPIYRFILLGRDCVSVSSPAMLRQVLQTNVAGVKKDVDFAYKPFLSILGTGIVTSEGKEWLRQRLSVGK 203          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Uncharacterized (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5T7_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.010e-21
Identity = 41/90 (45.56%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   13 GPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVN 282
            G  L+L    PWD M +W +  G IY+F+LFG   VV++DP  ++EV++T +  + KD+ F Y+PF+ LLGTG+VTS+G  W  QR  V+
Sbjct:   14 GQVLELIRLPPWDLMVQWMERLGPIYRFTLFGESCVVVADPRLLREVLQTSMKAFQKDLGFTYKPFMPLLGTGLVTSEGQLWYTQRAMVS 103          
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Match: Cytochrome (P450 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6THW0_CHLSO)

HSP 1 Score: 95.1 bits (235), Expect = 8.430e-21
Identity = 43/91 (47.25%), Postives = 63/91 (69.23%), Query Frame = 1
Query:    1 LPVLGPALKLAEG-APWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKEVMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQR 270
            LP+LG AL LA    PW+ M  WA++ G + +FS+     ++++DPA  K V +T    Y KD+DF+Y+PFLS+LGTG+VT++G  W+KQR
Sbjct:   74 LPLLGHALSLATAYCPWEKMLEWARQKGPLTRFSILYRTGLIVNDPAGAKRVFQTGQRLYDKDLDFSYKPFLSILGTGLVTANGAHWQKQR 164          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8931.17119.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Cytochrome4.940e-6298.92P450 n=1 Tax=Ectocarpus siliculosus TaxID=2880 Rep... [more]
Uncharacterized6.350e-5897.87protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Cytochrome2.840e-3251.61P450 (Fragment) n=1 Tax=Tribonema minus TaxID=3033... [more]
Cytochrome1.970e-2550.00P450 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY... [more]
Hypothetical7.280e-2560.53protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Hypothetical5.170e-2346.81protein n=1 Tax=Picocystis salinarum TaxID=88271 R... [more]
Hypothetical6.690e-2350.00protein n=1 Tax=Eutreptiella gymnastica TaxID=7302... [more]
Hypothetical8.280e-2350.52protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Uncharacterized2.010e-2145.56protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Cytochrome8.430e-2147.25P450 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8931contigEcto-sp9_F_contig8931:3085..3710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score92.4
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog554065.XP_005844153.1
KEGG koko:K20660
EggNOG free text desc.Cytochrome P450
EggNOG OGs34GV8@3041,37MXW@33090,COG2124@1,KOG0157@2759
COG Functional cat.IQ
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00199
Hectar predicted targeting categoryother localisation
Exons2
Model size288
Cds size288
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930951.4653528-CDS-Ecto-sp9_F_contig8931:3084..32491622930951.4653528-CDS-Ecto-sp9_F_contig8931:3084..3249Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8931 3085..3249 +
1692278964.0467865-CDS-Ecto-sp9_F_contig8931:3084..32491692278964.0467865-CDS-Ecto-sp9_F_contig8931:3084..3249Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8931 3085..3249 +
1622930951.480469-CDS-Ecto-sp9_F_contig8931:3587..37101622930951.480469-CDS-Ecto-sp9_F_contig8931:3587..3710Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8931 3588..3710 +
1692278964.0608418-CDS-Ecto-sp9_F_contig8931:3587..37101692278964.0608418-CDS-Ecto-sp9_F_contig8931:3587..3710Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8931 3588..3710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8931.17119.1prot_Ecto-sp9_F_contig8931.17119.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8931 3085..3710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8931.17119.1

>prot_Ecto-sp9_F_contig8931.17119.1 ID=prot_Ecto-sp9_F_contig8931.17119.1|Name=mRNA_Ecto-sp9_F_contig8931.17119.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=96bp
LPVLGPALKLAEGAPWDTMTRWAQEYGSIYKFSLFGNVNVVLSDPAFMKE
VMRTKISKYHKDVDFAYRPFLSLLGTGIVTSDGPKWRKQRNKVNE*
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mRNA from alignment at Ecto-sp9_F_contig8931:3085..3710+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8931.17119.1 ID=mRNA_Ecto-sp9_F_contig8931.17119.1|Name=mRNA_Ecto-sp9_F_contig8931.17119.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=626bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8931:3085..3710+ (Ectocarpus species9 EcSCA_722f female)
TTGCCGGTGCTTGGACCTGCCCTCAAGCTAGCCGAGGGGGCCCCGTGGGA TACGATGACACGGTGGGCGCAGGAGTACGGCAGCATCTACAAGTTCTCCC TGTTCGGCAACGTCAACGTCGTGTTGTCGGACCCGGCCTTCATGAAGGAG GTCATGCGGACTAAGGTGAAGACGAAAGCTCGACAGCGGCTGTTTGACAA AGAGATTCACTGGTCATGGCTACGGTTCCAAGTGTGTGGGAGACCGGGTG CACATGGCTTAATCTTCCATCTTGCTGTGGTTCGGCCATGAAACCAACAA ACACTGGCTAGTCGGCTATTGTCACCATCGCCGTGTGTTGGTTTCATGGC CCTACAGTCGCGTGGTATATTCTAGTATCTGCCGTTCTCTTTCGTGTGGC ACAAGCTCTTCGCAATACTGTTGTACTTTTACAATGATTCCGCAGACGAT CCCACGGTGCACACCCCCCGTTCTCGTCCCGCACCACATTTTCCCAAGAG CAGATATCCAAGTACCACAAGGACGTCGACTTCGCCTACCGCCCATTCCT TTCCCTTCTCGGAACCGGCATCGTCACGTCAGATGGACCCAAGTGGCGCA AGCAGCGCAACAAGGTGAACGAATAG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8931:3085..3710+

>mRNA_Ecto-sp9_F_contig8931.17119.1 ID=mRNA_Ecto-sp9_F_contig8931.17119.1|Name=mRNA_Ecto-sp9_F_contig8931.17119.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=576bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8931:3085..3710+ (Ectocarpus species9 EcSCA_722f female)
TTGCCGGTGCTTGGACCTGCCCTCAAGCTAGCCGAGGGGGCCCCGTGGGA
TACGATGACACGGTGGGCGCAGGAGTACGGCAGCATCTACAAGTTCTCCC
TGTTCGGCAACGTCAACGTCGTGTTGTCGGACCCGGCCTTCATGAAGGAG
GTCATGCGGACTAAGTTGCCGGTGCTTGGACCTGCCCTCAAGCTAGCCGA
GGGGGCCCCGTGGGATACGATGACACGGTGGGCGCAGGAGTACGGCAGCA
TCTACAAGTTCTCCCTGTTCGGCAACGTCAACGTCGTGTTGTCGGACCCG
GCCTTCATGAAGGAGGTCATGCGGACTAAGATATCCAAGTACCACAAGGA
CGTCGACTTCGCCTACCGCCCATTCCTTTCCCTTCTCGGAACCGGCATCG
TCACGTCAGATGGACCCAAGTGGCGCAAGCAGCGCAACAAGGTGAACGAA
TAGATATCCAAGTACCACAAGGACGTCGACTTCGCCTACCGCCCATTCCT
TTCCCTTCTCGGAACCGGCATCGTCACGTCAGATGGACCCAAGTGGCGCA
AGCAGCGCAACAAGGTGAACGAATAG
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