mRNA_Ecto-sp9_F_contig8905.17092.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig8905.17092.1
Unique NamemRNA_Ecto-sp9_F_contig8905.17092.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8905.17092.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig8905contigEcto-sp9_F_contig8905:1568..4927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size439
Cds size435
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig8905.17092.1prot_Ecto-sp9_F_contig8905.17092.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig8905 1570..4927 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930947.5928528-CDS-Ecto-sp9_F_contig8905:1569..18091622930947.5928528-CDS-Ecto-sp9_F_contig8905:1569..1809Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8905 1570..1809 -
1692278962.2164211-CDS-Ecto-sp9_F_contig8905:1569..18091692278962.2164211-CDS-Ecto-sp9_F_contig8905:1569..1809Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8905 1570..1809 -
1622930947.6154752-CDS-Ecto-sp9_F_contig8905:2929..30811622930947.6154752-CDS-Ecto-sp9_F_contig8905:2929..3081Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8905 2930..3081 -
1692278962.2273884-CDS-Ecto-sp9_F_contig8905:2929..30811692278962.2273884-CDS-Ecto-sp9_F_contig8905:2929..3081Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8905 2930..3081 -
1622930947.6327133-CDS-Ecto-sp9_F_contig8905:4884..49271622930947.6327133-CDS-Ecto-sp9_F_contig8905:4884..4927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8905 4885..4927 -
1692278962.2382536-CDS-Ecto-sp9_F_contig8905:4884..49271692278962.2382536-CDS-Ecto-sp9_F_contig8905:4884..4927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig8905 4885..4927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig8905.17092.1

>prot_Ecto-sp9_F_contig8905.17092.1 ID=prot_Ecto-sp9_F_contig8905.17092.1|Name=mRNA_Ecto-sp9_F_contig8905.17092.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=145bp
ARTWRSWLRAWSGRGAPGISSARGGRRNPAPSHRSLRWRLRQRVPRPRVP
RRNGGARKEDRNGARPVKATPHAEPPRDPARRARRGLRSGSRAGRRCLAG
ERAPLAAVGRGHRRRGRLQWGSTRLVSLCPGVPVPGVPFGSPRVS
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mRNA from alignment at Ecto-sp9_F_contig8905:1568..4927-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig8905.17092.1 ID=mRNA_Ecto-sp9_F_contig8905.17092.1|Name=mRNA_Ecto-sp9_F_contig8905.17092.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3360bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8905:1568..4927- (Ectocarpus species9 EcSCA_722f female)
GCGCGGACATGGAGGAGCTGGTTGCGGGCATGGTCCGGGCGAGGTGAGGG
ATCGGTGGCTTGTGCGTTTCTGATCGATCAGGTGGAAGAAAGGTACGCCG
ACTTTGTTTTTGTGCGTTTGCCGCTGTGTACCCCTCCAACCGCCACGTGT
CGGCCGCTCGCTGTCTTTTCTTAACACGGCGCTGGCGTTGTGCGCCCGTG
TCGATGTGGCTACAACTGAAGGACTGTTTTTTCTTCAGTAGCAGTGCCCT
TACCAGCAGGGAAGTATCCGTACCTGTATATATACAGAAGTAGAGAACAT
TAGCTCAAGCTCAAGCGCGGCCCTCAGGCCTCACAGCGACGCCTGAGAGC
GAAGCGACGAGATTAGGCCTACTCTCAAGCCGACACGATAGCGTGACATC
GCGGCTCGCGCCGCAGAGGGCGCCGCCCGTCCTCCCTCTCCGCGGAGCCC
GCGTGACGCCCTCTCTCCGCGAGACGCCCCCGCCAAAGGCGCCGGGTGCC
GAGCACCGGACGAGCTGCCGGCGCCGGCGGAACCGCTCCAAGCCACGTGT
TAGCACCTGCAATGGCACCTTGGACCTCTTCAAGCGAGGCTGTCAGTAAA
CGCTGCTGTGATGCTGAGGCTGTCAGTAAGCGCTGCTGTGAGGCTGTGAT
TGGGCAGAACGTTTCTGTCGGTGTATTTTCGGGAATCACAGAAATGGGAA
AGTCAGAACAATGTCTTATGATAGCACAACAAGCAAACACGTATCTCTAC
CTCTTGTGTACTTCTTACGAAATGGTACATAGGCACTTGCTACAACCATC
GTGTGTTAGGGACTGCTGCTGTGTAACACTGCTACAGAGCAGTACACGTT
GCAATGTGCGGGCGACCAAAAGTGGGCATACATCTCTTCCAACAATGTGA
AGAAATGGCAACTGGCCGGATTCCGAGATTCGCGCGTGAATCTCGGAACT
CGGAATATCTATTATTATGCTGTGTTGTTTTTCTGGGGAAAACGGTGATG
TGTGTGCGAAACATACTACTGCAGCTGCTGTTTGAGCCACACAGCGATAG
CTATAGGTGTTCGCCAAAGTTACATGCGGACGACGGATAGGCTGGCACAC
ATGGTCGCGATGTCGTGTTAATGTGTACGCCCGGCTTCAACGCGTAGCAA
TAAGTTCAAAGAGCAATATACATGTGTTTGCAACAACAACAGGACTTCAG
CGCTTTCTTCCGACTTCGAAGCTGCATCTTAGTTCTTCTCTGCTGCACAC
TACCTCAGCCACCGCCCGTCCCACTTGGTTTTGCGTTTGAAGCCTGCAAC
TGCCCTCACATTTACCATTTCATATGCACAAATGCACTCTCAGACGGGGA
ACGAGGGGGGCGGCAGCCGGCAGCCCCCTGCGTCCCCGGCCCTTGCTTTT
TTTCACGTTCTGCGGGGCACCATGCTCCTGAAAACGATGGTATCCTTAAA
GCGAGGACGACTGTTCTTACATCTTGCACGCCGTGTCAGGGCGGTAATGT
GGACATGCATGACTGATCAAATTTTGGCCCATGCGTGTCCAGGTTTCGCC
TAAAGGAAAGAGTACAACACACGGCGGGTGCCCGAGTAGGTGCCCATTGC
AAAGCTAGCAAGACACTTCGTGTAACTACTTCTAGTTAAGGGACATTTTC
TGCACTGCTGTCGAGACGATGCATTGATTGGCGGCGCGATCTGCATTATC
TTCCAAGTGTCCGAATAATTCTGCTGCCGTACTTGGATACCGGCTCCTGA
CTAGTACGGCACCCGTGGAGTCGTGTTCGTTTTTGCGCCGATGTTTTGCG
GTGATGGATGACACCCTTGCCGCCGCCGCCGCCGCCCCATGTGCAGGAGC
GCCAGGAATCAGCTCCGCGAGAGGGGGAAGACGAAATCCGGCTCCCAGTC
ATCGGTCTCTACGGTGGCGTCTACGACAAAGAGTACCAAGGCCAAGGGTC
CCAAGGAGGAACGGGGGGGCAAGAAAGGAAGATCGGAACGGAGCTCGGGT
AAGCTTAGATATGGGAGGATGAAGGGGGGGGGGGGCGTACTCTTATGTTT
TACGGGCCTTATAATAGCGGTTAGACCATTGACCACGCGTCCTCGAGAGG
ACAGAGCATTGTTCCCACAGGGCCGAACACCGATGGCCGATCGTTCCTTC
CTGCTTTGCCAAAGGTGGCTCAAAAATGTTTTCCCTAGCCTATCTATCCT
ATCGATATCACTTCCCGAATCTTCAACCCACTTACTATGTCCCAGTACAG
CTACCGTCCTCTCCTCTCTATTCCATGCCTCAAACATCTCCCTGTGTCTT
CCTTCTACTTTTCCCAGCTCAGTCATGTACACTTCCATCTCCTTGTACAA
CGGACATTCCGTAACTACATGAACCCGGTCTTCGCACTCGTAACCGACAT
TTAACTTGTCGTCTTCATCGTCTACCTCCCTATATCTTCTTCTACATTCT
CAAAGGCAATGTCCCCGGGCCTGAATTTAACCTTCAGCTTGTCCGGTCCA
TGTAGGTACTCCTTGAACCGTTTTCCTTCGTTCAACATTCCGTACACATC
TAGACTCCTTATACTTGTTTTTTTTAGTGATACCCTGTTCTTCTCTCGCG
GCAAAAGCAACAGAGGTCTTCTTGAACCCCTCTAGACCTTCCGTTTCCAG
CGTATCACCTTCGTCAATTTCGAACTCCTTCCGTGCGTCCTCTGCAACCT
TGACCCACTCCGTGGGTTGTTTACCCATCTTGTTGTTTGCCCACTTTGCG
TCCCACCTTATCCTCGTTAACCTCTCCTCTCCCATCCCGTACATGCGATA
CTTATTGGATCCCCAGTTCTGCCCTGTCCTCGTTGCTTACCATGATGGCA
CCCCGTTTTGAGGGGTTGTTGCTTGGCCAGCCATCGACCGTCTCCTGGCG
CGGGATAGCTTAGTTACGGGGGGTACATATTTTTTGGGAAGTGTTGCATA
GTCGTCGGCCATCTCCGGAGACCGCAGACACCGCCGTGCTGTGTGTAGCG
CCGGGCACCTTCCATGCATTCATGAGACCTACGACTGGACAGCGACATGT
CCTCTCCCCCCCTTCCCGTCCGCTGCTGCTGCTCCTCCGTTGCGACTTGA
TTCTTGATTGTTGTACAGCCCGTGAAGGCAACCCCACACGCGGAACCTCC
CCGCGACCCAGCGCGCCGCGCCAGGCGAGGGCTTCGCAGCGGCTCTCGAG
CGGGACGGCGGTGTCTGGCGGGGGAGCGGGCACCGCTAGCGGCGGTGGGG
CGGGGGCATCGGCGGCGGGGGCGGCTGCAGTGGGGGTCGACACGGCTCGT
GAGTCTGTGTCCCGGCGTGCCAGTGCCGGGAGTTCCGTTCGGCTCTCCTC
GCGTAAGCGT
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8905:1568..4927-

>mRNA_Ecto-sp9_F_contig8905.17092.1 ID=mRNA_Ecto-sp9_F_contig8905.17092.1|Name=mRNA_Ecto-sp9_F_contig8905.17092.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8905:1568..4927- (Ectocarpus species9 EcSCA_722f female)
GCGCGGACATGGAGGAGCTGGTTGCGGGCATGGTCCGGGCGAGGCGCGGA
CATGGAGGAGCTGGTTGCGGGCATGGTCCGGGCGAGGAGCGCCAGGAATC
AGCTCCGCGAGAGGGGGAAGACGAAATCCGGCTCCCAGTCATCGGTCTCT
ACGGTGGCGTCTACGACAAAGAGTACCAAGGCCAAGGGTCCCAAGGAGGA
ACGGGGGGGCAAGAAAGGAAGATCGGAACGGAGCTCGGGAGCGCCAGGAA
TCAGCTCCGCGAGAGGGGGAAGACGAAATCCGGCTCCCAGTCATCGGTCT
CTACGGTGGCGTCTACGACAAAGAGTACCAAGGCCAAGGGTCCCAAGGAG
GAACGGGGGGGCAAGAAAGGAAGATCGGAACGGAGCTCGGCCCGTGAAGG
CAACCCCACACGCGGAACCTCCCCGCGACCCAGCGCGCCGCGCCAGGCGA
GGGCTTCGCAGCGGCTCTCGAGCGGGACGGCGGTGTCTGGCGGGGGAGCG
GGCACCGCTAGCGGCGGTGGGGCGGGGGCATCGGCGGCGGGGGCGGCTGC
AGTGGGGGTCGACACGGCTCGTGAGTCTGTGTCCCGGCGTGCCAGTGCCG
GGAGTTCCGTTCGGCTCTCCTCGCGTAAGCCCCGTGAAGGCAACCCCACA
CGCGGAACCTCCCCGCGACCCAGCGCGCCGCGCCAGGCGAGGGCTTCGCA
GCGGCTCTCGAGCGGGACGGCGGTGTCTGGCGGGGGAGCGGGCACCGCTA
GCGGCGGTGGGGCGGGGGCATCGGCGGCGGGGGCGGCTGCAGTGGGGGTC
GACACGGCTCGTGAGTCTGTGTCCCGGCGTGCCAGTGCCGGGAGTTCCGT
TCGGCTCTCCTCGCGTAAGC
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