mRNA_Ecto-sp9_F_contig8902.17089.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDY2_ECTSI) HSP 1 Score: 305 bits (782), Expect = 1.480e-97 Identity = 172/179 (96.09%), Postives = 174/179 (97.21%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADKNNVLAAAGGVTPGIGDVEAGGXXXXXX--AAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHSH 534
AQRDRFRRRIK+LE EREDEQRETRAA+GVMENLQRDNLQLYEKVRFLQSYQRG TGADKNNVLAAAGGVTPGIGDVEAGGXXXXXX AAREGEEGGSRK TEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHSH
Sbjct: 499 AQRDRFRRRIKKLEAEREDEQRETRAAQGVMENLQRDNLQLYEKVRFLQSYQRGATGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXXGAAREGEEGGSRKATEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHSH 677
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U0ZB21_9STRA) HSP 1 Score: 139 bits (349), Expect = 7.440e-35 Identity = 86/176 (48.86%), Postives = 108/176 (61.36%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHS 531
AQRDRF RRIK+LE ER R++ + E L+RDNL+LYEK+R+LQSY + L A G D+EA G TEA+Y +Y+A+ NPFTQFSQ ERQR+Y EL+VAEKITLNTTRMFL +KFAR FVFFYV+ LH + + +W H+
Sbjct: 582 AQRDRFVRRIKDLEEERAALTRQSGQERQTAEQLKRDNLKLYEKIRYLQSYSSRAVSSPALRALEAGG-------DLEAAG-------------------TEAKYKSMYDAQNNPFTQFSQMERQRRYGELSVAEKITLNTTRMFLSSKFARTFVFFYVIGLHALFCAAIMHWAHT 731
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6B2_9STRA) HSP 1 Score: 120 bits (302), Expect = 9.340e-30 Identity = 82/185 (44.32%), Postives = 107/185 (57.84%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGAD--------KNNVLAAAGGVTPGIGDVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHSH 534
AQRDR++ R +ELE ++E+ K E++ RDNL+LYEKVRFLQSY++G G D + + L + + + E G A G TEARY +YE ++NPFT FS ER RKYQ+L+V +KITL TTR FL +K AR VFFY V LH++VF TL W H H
Sbjct: 121 AQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPDALDSTQDKRMSGLEHSTLHQRNVVNDEGKGAQEYALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYAVSLHLLVFLTLYMWGHHH 305
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAN9_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.590e-27 Identity = 82/190 (43.16%), Postives = 106/190 (55.79%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXAAREGEE-------------GGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHSH 534
AQRDR++ R +ELE ++E+ K E++ RDNL+LYEKVRFLQSY++G G A + +E A EG+E G TEARY +YE ++NPFT FS ER RKYQ+L+V +KITL TTR FL +K AR VFFY + LH++VF TL W H H
Sbjct: 672 AQRDRYKARTRELEGRLAAVEQESGRHKAQAESMLRDNLKLYEKVRFLQSYKKGRVGPG-----ALDSAQDKRMSGLEHSALHQRNVANDEGKEAQECALEAGRVPTGAGAAATEARYRAMYEEQMNPFTAFSVAERVRKYQDLSVIDKITLQTTRAFLAHKKARMAVFFYALSLHLLVFLTLYMWGHHH 856
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZWT2_DICPU) HSP 1 Score: 111 bits (277), Expect = 2.670e-27 Identity = 68/174 (39.08%), Postives = 108/174 (62.07%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADKN-NVLAAAGGVTPG---IGDVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTL 513
QRDRF+ +I EL E+ +++ ++ ++L+ DN++LYEK+RFLQSY + +G + + ++ AGG D+E G G G +T E RYG+LYE INPF F+++E+ R+Y+E+ AE++ LN++R FL NK++R F+F Y +LLH++VF TL
Sbjct: 7 GQRDRFKAKIDELGIEKSKLEKQLETSRQETQSLKNDNIKLYEKIRFLQSYDKNKSGGNNSGSINIGAGGKRSSNRDTYDIERG------VDVSSGSNNGGPETEE-RYGKLYEESINPFLSFNKKEKYRRYKEMNTAERVILNSSRFFLSNKYSRLFLFIYSILLHLMVFATL 173
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0X4_9STRA) HSP 1 Score: 110 bits (276), Expect = 6.390e-27 Identity = 72/192 (37.50%), Postives = 102/192 (53.12%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQ----------------RGTTGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHS 531
AQRDRFR R++ELE +++ E K E LQ+DNL LYEK+RFLQ+++ R ++ G PG GD++ RY QLYE R++PF QFSQ ERQRKY EL++ +K+TL++ R+ L + F R+F FYV+ LH++VF TL + H+
Sbjct: 14 AQRDRFRARMQELEADKQQLLAELLQEKSGAEQLQKDNLALYEKIRFLQTFRSSSATKASSASPLRGNRAVRRMEEGQGPGGGGSPLPGAGDLDV------------------------RYSQLYETRLSPFAQFSQTERQRKYAELSLPDKVTLSSARIVLSSSFGRSFFLFYVLCLHLLVFGTLYHAAHT 181
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEU8_GLOUD) HSP 1 Score: 110 bits (274), Expect = 1.000e-24 Identity = 69/177 (38.98%), Postives = 101/177 (57.06%), Query Frame = 1
Query: 1 KAQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTLNYWTHS 531
++QRDRFR R+KEL++E+ + + K + L+ DN+QLY K+R+LQSY+ G N A VTP + + E GG+ EA+Y LYE ++NPF QF+ ERQ++Y L +KI LN+ R+FLG++ RN F Y++LLH +VF TL + H
Sbjct: 557 RSQRDRFRERMKELQSEKSKLEELANSYKASVTRLENDNMQLYHKIRYLQSYRNG------NGRNGANHRVTPSYNN---------NFSNLEDGNGGAGGDVEAKYKSLYEEKMNPFVQFNNLERQQRYTNLNTVDKILLNSARLFLGHRITRNIAFGYILLLHFLVFATLYSFMHG 718
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: hypothetical (protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644C91D) HSP 1 Score: 108 bits (269), Expect = 4.780e-24 Identity = 67/170 (39.41%), Postives = 100/170 (58.82%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTL 513
QRDRF+ + +LE E+ +++ K + +L++DN++LYEK+RFLQSY + G AG D+E GG S TE +YG+LYE INPF F+++E+ R+Y+E+ AE++ LNT+R FL K++R F+F Y VLLH++VF TL
Sbjct: 571 GQRDRFKTKNLQLENEKAQLEKQLETCKLEVHSLKQDNIKLYEKIRFLQSYDKNRGGGVITGNAKRAGDRNY---DMERGGTTAST----------SNNDTEEKYGKLYEDSINPFLSFNKKEKYRRYKEMNTAERVILNTSRFFLSTKYSRLFLFIYSVLLHLLVFVTL 727
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54R70_DICDI) HSP 1 Score: 108 bits (269), Expect = 4.880e-24 Identity = 69/176 (39.20%), Postives = 108/176 (61.36%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADK-NNVLAAAGGVTPGIG-----DVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTL 513
+QRDRF+ +I ELE+++ +++ + + + +L+ DN++LYEK+RFLQSY + +G NN G DVE G ++ +GG TE +YG+LYE INPF F+++E+ R+Y+E+ AE++ LN +R FL NK++R F+F Y VLLH++VF TL
Sbjct: 653 SQRDRFKTKIVELESDKSKLEKQLDSCRQELSSLKTDNIKLYEKIRFLQSYDKNKSGGGGINNANKEIHSKRNNSGFEKSYDVERG-LDIPSSSSSSSSQGGPE--TEEKYGKLYEESINPFLSFNKKEKYRRYREMNTAERVILNGSRFFLSNKYSRLFLFIYSVLLHLMVFLTL 825
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Match: Protein (CASP n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DP75_THETB) HSP 1 Score: 106 bits (265), Expect = 1.640e-23 Identity = 75/170 (44.12%), Postives = 98/170 (57.65%), Query Frame = 1
Query: 4 AQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQSYQRGTTGADKNNVLAAAGGVTPGIGDVEAGGXXXXXXAAREGEEGGSRKTTEARYGQLYEARINPFTQFSQRERQRKYQELTVAEKITLNTTRMFLGNKFARNFVFFYVVLLHVVVFTTL 513
AQRDRF+ R+ ELETE A+ + L+ DNL+LYEK+RFL+SY D + +G + + XXXXXX + E RY +LYE +NPFT F +++R Y EL AEK+TLNT+R+ LG KFAR FVFFY +LLHV+VF L
Sbjct: 532 AQRDRFKARVLELETENATLHERVHTARAAADALEADNLELYEKIRFLESYDDIARERDATMLRMESGELGGPLAMPAGTXXXXXXXXXXXXXXXXXXXSAELRYRKLYEDSMNPFTLFHRKQRDSSYNELNAAEKVTLNTSRILLGTKFARTFVFFYSLLLHVLVFFVL 701 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig8902.17089.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig8902.17089.1 >prot_Ecto-sp9_F_contig8902.17089.1 ID=prot_Ecto-sp9_F_contig8902.17089.1|Name=mRNA_Ecto-sp9_F_contig8902.17089.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=178bp KAQRDRFRRRIKELETEREDEQRETRAAKGVMENLQRDNLQLYEKVRFLQback to top mRNA from alignment at Ecto-sp9_F_contig8902:116..1329+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig8902.17089.1 ID=mRNA_Ecto-sp9_F_contig8902.17089.1|Name=mRNA_Ecto-sp9_F_contig8902.17089.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1214bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8902:116..1329+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig8902:116..1329+ >mRNA_Ecto-sp9_F_contig8902.17089.1 ID=mRNA_Ecto-sp9_F_contig8902.17089.1|Name=mRNA_Ecto-sp9_F_contig8902.17089.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1068bp|location=Sequence derived from alignment at Ecto-sp9_F_contig8902:116..1329+ (Ectocarpus species9 EcSCA_722f female)back to top |