mRNA_Ecto-sp9_F_contig10111.152.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig10111.152.1
Unique NamemRNA_Ecto-sp9_F_contig10111.152.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig10111.152.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig10111contigEcto-sp9_F_contig10111:2249..2992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size745
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.820536-CDS-Ecto-sp9_F_contig10111:2248..26651622928205.820536-CDS-Ecto-sp9_F_contig10111:2248..2665Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10111 2249..2665 +
1692277794.4692037-CDS-Ecto-sp9_F_contig10111:2248..26651692277794.4692037-CDS-Ecto-sp9_F_contig10111:2248..2665Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig10111 2249..2665 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.832074-UTR-Ecto-sp9_F_contig10111:2665..29921622928205.832074-UTR-Ecto-sp9_F_contig10111:2665..2992Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10111 2666..2992 +
1692277794.477998-UTR-Ecto-sp9_F_contig10111:2665..29921692277794.477998-UTR-Ecto-sp9_F_contig10111:2665..2992Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig10111 2666..2992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig10111.152.1prot_Ecto-sp9_F_contig10111.152.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig10111 2249..2665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig10111.152.1

>prot_Ecto-sp9_F_contig10111.152.1 ID=prot_Ecto-sp9_F_contig10111.152.1|Name=mRNA_Ecto-sp9_F_contig10111.152.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=139bp
TQKKKTGGKVKQPEGPKSNKQTPSPGYPHIPCWVSGEALTRPPHDGDRPH
NAKYSGKAESSCPTITDTAQRSNFHKGATPKPDCARDQAYTSGCAVCVMN
TTTRTMLPTDPAFSVHYARQRAGYCPPRRVFSTGIYFL*
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mRNA from alignment at Ecto-sp9_F_contig10111:2249..2992+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig10111.152.1 ID=mRNA_Ecto-sp9_F_contig10111.152.1|Name=mRNA_Ecto-sp9_F_contig10111.152.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=744bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10111:2249..2992+ (Ectocarpus species9 EcSCA_722f female)
ACACAAAAAAAAAAAACTGGAGGGAAGGTAAAACAACCCGAGGGACCGAA
ATCAAACAAGCAAACGCCAAGCCCTGGGTACCCCCACATCCCCTGCTGGG
TCAGCGGCGAAGCACTTACTCGACCCCCGCACGACGGCGACAGACCGCAC
AACGCGAAATACAGCGGTAAGGCCGAGAGTTCGTGCCCTACAATAACCGA
CACCGCGCAGCGAAGCAATTTCCACAAGGGGGCTACCCCCAAGCCCGATT
GTGCCCGCGACCAGGCCTACACGTCTGGGTGTGCCGTGTGCGTGATGAAT
ACCACAACACGTACCATGCTCCCCACGGACCCCGCATTTTCGGTGCACTA
TGCTCGGCAACGAGCCGGATACTGCCCCCCGCGGCGCGTGTTCTCTACTG
GTATTTATTTTTTATGACAAGCAAATAAAAATGAACAAATGGCACATGCT
TCACAGCAGTTCAGAAAACGGGTTCAATATACCAGCTAGGAGTGCTCCTT
CCCGATCGCAGCACAGCAGCAATAAAAAACAACAGGATACGACAATACAA
TAGTGGTACATACGGGCGCCATGCCCAGAGGGTCCGGCAGAGCGTAATCG
ACCAAACACAAAGGAAACACAAAAAGCTGCTCGCAAGAAATCAAGCGCTA
ATTCGTAGATACCAAAACACACGGTTAAACAATACATGGCAGATGCGTGT
CTTATCCTTAACTACTGCAAGACAGCTAGGGGGTTCCGCAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig10111:2249..2992+

>mRNA_Ecto-sp9_F_contig10111.152.1 ID=mRNA_Ecto-sp9_F_contig10111.152.1|Name=mRNA_Ecto-sp9_F_contig10111.152.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=834bp|location=Sequence derived from alignment at Ecto-sp9_F_contig10111:2249..2992+ (Ectocarpus species9 EcSCA_722f female)
ACACAAAAAAAAAAAACTGGAGGGAAGGTAAAACAACCCGAGGGACCGAA
ATCAAACAAGCAAACGCCAAGCCCTGGGTACCCCCACATCCCCTGCTGGG
TCAGCGGCGAAGCACTTACTCGACCCCCGCACGACGGCGACAGACCGCAC
AACGCGAAATACAGCGGTAAGGCCGAGAGTTCGTGCCCTACAATAACCGA
CACCGCGCAGCGAAGCAATTTCCACAAGGGGGCTACCCCCAAGCCCGATT
GTGCCCGCGACCAGGCCTACACGTCTGGGTGTGCCGTGTGCGTGATGAAT
ACCACAACACGTACCATGCTCCCCACGGACCCCGCATTTTCGGTGCACTA
TGCTCGGCAACGAGCCGGATACTGCCCCCCGCGGCGCGTGTTCTCTACTG
GTATTTATTTTTTATGAACACAAAAAAAAAAAACTGGAGGGAAGGTAAAA
CAACCCGAGGGACCGAAATCAAACAAGCAAACGCCAAGCCCTGGGTACCC
CCACATCCCCTGCTGGGTCAGCGGCGAAGCACTTACTCGACCCCCGCACG
ACGGCGACAGACCGCACAACGCGAAATACAGCGGTAAGGCCGAGAGTTCG
TGCCCTACAATAACCGACACCGCGCAGCGAAGCAATTTCCACAAGGGGGC
TACCCCCAAGCCCGATTGTGCCCGCGACCAGGCCTACACGTCTGGGTGTG
CCGTGTGCGTGATGAATACCACAACACGTACCATGCTCCCCACGGACCCC
GCATTTTCGGTGCACTATGCTCGGCAACGAGCCGGATACTGCCCCCCGCG
GCGCGTGTTCTCTACTGGTATTTATTTTTTATGA
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