mRNA_Ecto-sp9_F_contig11826.1507.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11826.1507.1
Unique NamemRNA_Ecto-sp9_F_contig11826.1507.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11826.1507.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD5_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.100e-46
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 2 
Query:    2 PDWYEEEYDRLARSGRRVVALAHRSLGPSKSKGAKAALTSLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIRDLRHAGGCSVTIVT 262
            PDWYEEEYDRLARSGRRVVALAHRSLGPSKSKGAKAAL SLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIRDLRHAGGCSVTIVT
Sbjct:  937 PDWYEEEYDRLARSGRRVVALAHRSLGPSKSKGAKAALASLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIRDLRHAGGCSVTIVT 1023
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BLAST of mRNA_Ecto-sp9_F_contig11826.1507.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 2.640e-45
Identity = 84/87 (96.55%), Postives = 85/87 (97.70%), Query Frame = 2 
Query:    2 PDWYEEEYDRLARSGRRVVALAHRSLGPSKSKGAKAALTSLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIRDLRHAGGCSVTIVT 262
            PDWYEEEYDRLAR+GRRVVALAHRSLGPSKSKGAKAALTSLSRAE EKEGSLVFDGFLSFHCKTRADSKRVIRDLR AGGCSVTIVT
Sbjct:   11 PDWYEEEYDRLARTGRRVVALAHRSLGPSKSKGAKAALTSLSRAEVEKEGSLVFDGFLSFHCKTRADSKRVIRDLRRAGGCSVTIVT 97
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BLAST of mRNA_Ecto-sp9_F_contig11826.1507.1 vs.
Match: p-ATPase (family transporter: cation n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J6E1_9EUKA)

HSP 1 Score: 60.8 bits (146), Expect = 7.470e-9
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:    2 PDWYEEEYDRLARSGRRVVALAHRSLGPSKSKGAKAALTSLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIRDL 226
            P WY+ +Y  LA  G RV+ALAHR  G   ++ A  AL +  R   E++  LVFDGF++F CKTRADS  V+  L
Sbjct:  387 PAWYDAKYRALAERGMRVLALAHREAGTGDAQAA--ALAAEPRDTVERD--LVFDGFIAFACKTRADSPTVVHAL 457
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BLAST of mRNA_Ecto-sp9_F_contig11826.1507.1 vs.
Match: P-type (ATPase superfamily n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DKD0_THETB)

HSP 1 Score: 58.2 bits (139), Expect = 6.690e-8
Identity = 35/81 (43.21%), Postives = 49/81 (60.49%), Query Frame = 2 
Query:    8 WYEEEYDRLARSGRRVVALAHRSL-GPSKSKGAKAALTSLSR----AEAEKEGSLVFDGFLSFHCKTRADSKRVIRDLRHA 235
            WY   Y RLA+ G+RV+ALAH+ + GP   +G  A  T+  +    + +  E  LVFDGF+ F C  RADS+ V+ +LR A
Sbjct:  750 WYNATYQRLAKDGKRVLALAHKVVSGP---RGDAAVATAAEQLFEGSRSSIESDLVFDGFIVFSCAVRADSRDVVAELREA 827
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BLAST of mRNA_Ecto-sp9_F_contig11826.1507.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S1ENB4_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 9.150e-8
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 2 
Query:    2 PDWYEEEYDRLARSGRRVVALAHRSLGPSKSKGAKAALTSLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIRDLR 229
            P  YE  Y  LA  G RV+ALAH+ L   +S  A+    ++     E E +LVFDGFL+F CK RADS  +I  L+
Sbjct:  770 PKGYEAAYRSLAEKGMRVIALAHKVLSAEES--ARVGSQTMPFTRDEAESNLVFDGFLAFACKVRADSAEIIHALK 843
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BLAST of mRNA_Ecto-sp9_F_contig11826.1507.1 vs.
Match: P-type (cation-transporting ATPase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MN92_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 3.890e-6
Identity = 34/76 (44.74%), Postives = 40/76 (52.63%), Query Frame = 2 
Query:    2 PDWYEEEYDRLARSGRRVVALAHR---SLGPSKSKGAKAALTSLSRAEAEKEGSLVFDGFLSFHCKTRADSKRVIR 220
            P WY+  Y RLAR G RV+ALA+R   SL    S G+           A  E  L F GF++F C  R DSK VIR
Sbjct:  775 PSWYDATYQRLAREGMRVIALAYRPITSLDDGSSLGSDCEDRFQKAPRAWAESDLKFAGFIAFRCLMRKDSKDVIR 850
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11826.1507.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized2.100e-4698.85protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.640e-4596.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
p-ATPase7.470e-948.00family transporter: cation n=1 Tax=Chrysochromulin... [more]
P-type6.690e-843.21ATPase superfamily n=1 Tax=Thecamonas trahens ATCC... [more]
Hypothetical9.150e-844.74protein (Fragment) n=1 Tax=Ostreococcus mediterran... [more]
P-type3.890e-644.74cation-transporting ATPase n=2 Tax=Chloropicon pri... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11826contigEcto-sp9_F_contig11826:1880..3031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size265
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11826.1507.1prot_Ecto-sp9_F_contig11826.1507.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11826 1880..3031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928441.5025508-CDS-Ecto-sp9_F_contig11826:1879..19771622928441.5025508-CDS-Ecto-sp9_F_contig11826:1879..1977Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11826 1880..1977 +
1692277872.6810274-CDS-Ecto-sp9_F_contig11826:1879..19771692277872.6810274-CDS-Ecto-sp9_F_contig11826:1879..1977Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11826 1880..1977 +
1622928441.51709-CDS-Ecto-sp9_F_contig11826:2654..27701622928441.51709-CDS-Ecto-sp9_F_contig11826:2654..2770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11826 2655..2770 +
1692277872.6913967-CDS-Ecto-sp9_F_contig11826:2654..27701692277872.6913967-CDS-Ecto-sp9_F_contig11826:2654..2770Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11826 2655..2770 +
1622928441.5305114-CDS-Ecto-sp9_F_contig11826:2981..30311622928441.5305114-CDS-Ecto-sp9_F_contig11826:2981..3031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11826 2982..3031 +
1692277872.70118-CDS-Ecto-sp9_F_contig11826:2981..30311692277872.70118-CDS-Ecto-sp9_F_contig11826:2981..3031Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11826 2982..3031 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11826.1507.1

>prot_Ecto-sp9_F_contig11826.1507.1 ID=prot_Ecto-sp9_F_contig11826.1507.1|Name=mRNA_Ecto-sp9_F_contig11826.1507.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=88bp
AGLVRGGVRPPSQIGQEGRRSRAPITRTVEVERGQGRLDVAVPSRGGKGR
FPRLRRLPVVPLQDQSRQQTGDPRPATCGRLFGDHRHG
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mRNA from alignment at Ecto-sp9_F_contig11826:1880..3031+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11826.1507.1 ID=mRNA_Ecto-sp9_F_contig11826.1507.1|Name=mRNA_Ecto-sp9_F_contig11826.1507.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1152bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11826:1880..3031+ (Ectocarpus species9 EcSCA_722f female)
GCCGGATTGGTACGAGGAGGAGTACGACCGCCTAGCCAGATCGGGCAGGA
GGGTCGTCGCTCTCGCGCACCGATCACTCGGACCGTCGAAGTCGAAAGGT
GGGGACACGCCTGCTGCGGCGCCTGAGCGAAACCGCTCCTAGCTCCTTAC
CCCACCCGCAGTTTCCGCAAGAGGCAGAGAGATGGCACACCCCCTATGTA
TCAGACCGAATTTAAAGAGCGTGATGGCTCCTCAACCAAGTGGGAGCACA
ACGAGCCCGATGCGTTCTCGTTCCACGGAAAGCCCTCGGCCATATGTTTC
CAAAACCACCACTTTTGGTGTTGTCGCGAGCTTGGTTGTGGAGAAACCGG
GCTTTGAAAATCGGTCTAATTGTAGGGGGGTGCAATATTTTCCGCCTCTT
GGCGGTGTCTCTGCTTTCGGCGCTTTGTGTCGAGTTGCGGGGGGCGGTCT
TTTGCTGGGGGTCCTGGTGTCACTCTGACCAGGGTCGAACTGTTTGGAGA
GGGATGCGATTGGCGCGTCGTTGTGAGGGCTGACGAGGAGGGAGGTGGGG
GGGAGTCGACGTCGAAAGAGATGTCGTTTGATCCCTGTTTTCTCGATGCG
TCCGCACGCCTTGATAGTTTCGCCGGCACAAGACGAACGTTGTGGCCGGT
CACATGACGCGTGAGCAGGTGGAGAGAGACGACGGAGCGCTCTGCCTGCG
CACCGGCCGGATCGGGCCAATAACCAAGTCCTAGCATCGATGATCGCCTG
GTTTTCTCGCGTGTTGTCGCCGCAGGGGCCAAGGCCGCCTTGACGTCGCT
GTCCCGAGCAGAGGCGGAAAAGGAAGGTTCCCTCGTCTTCGACGGCTTCC
TGTCGTTCCACTGCAAGACCAGAGCCGACAGCAAACGGGTGGTGAGATAG
CCGCGGAAGCGAGTCTTTTATTGCTCTCTTTTGTGCCCTGTCTCTCGGTG
AAATTGATCTCTCGTGTGCGGTGTTTTTGGTTGGAGGAATACGTCGCTGT
GATTCTGCCTCGAGAGGCGACGTTCCGCGACCGTTCTTTGTTGTAGATAG
CCTGCTTGTCGCCGGTTTCCGTTTCTGTGTTGCTCTGGTCGTGCTGCCGC
AGATCCGAGACCTGCGACATGCGGGCGGCTGTTCGGTGACCATCGTCACG
GG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11826:1880..3031+

>mRNA_Ecto-sp9_F_contig11826.1507.1 ID=mRNA_Ecto-sp9_F_contig11826.1507.1|Name=mRNA_Ecto-sp9_F_contig11826.1507.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=528bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11826:1880..3031+ (Ectocarpus species9 EcSCA_722f female)
GCCGGATTGGTACGAGGAGGAGTACGACCGCCTAGCCAGATCGGGCAGGA
GGGTCGTCGCTCTCGCGCACCGATCACTCGGACCGTCGAAGTCGAAAGGC
CGGATTGGTACGAGGAGGAGTACGACCGCCTAGCCAGATCGGGCAGGAGG
GTCGTCGCTCTCGCGCACCGATCACTCGGACCGTCGAAGTCGAAAGGGGC
CAAGGCCGCCTTGACGTCGCTGTCCCGAGCAGAGGCGGAAAAGGAAGGTT
CCCTCGTCTTCGACGGCTTCCTGTCGTTCCACTGCAAGACCAGAGCCGAC
AGCAAACGGGTGGGGCCAAGGCCGCCTTGACGTCGCTGTCCCGAGCAGAG
GCGGAAAAGGAAGGTTCCCTCGTCTTCGACGGCTTCCTGTCGTTCCACTG
CAAGACCAGAGCCGACAGCAAACGGGTGATCCGAGACCTGCGACATGCGG
GCGGCTGTTCGGTGACCATCGTCACGGGATCCGAGACCTGCGACATGCGG
GCGGCTGTTCGGTGACCATCGTCACGGG
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