mRNA_Ecto-sp9_F_contig1011.148.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF1_ECTSI) HSP 1 Score: 559 bits (1441), Expect = 6.080e-192 Identity = 452/503 (89.86%), Postives = 457/503 (90.85%), Query Frame = 1
Query: 1 VSDLDDAVARRNQVVAAASRSVALPRPPAATPAAAGTXXAVSPPWALREDTDGPDPALWALSSGHETTGLAERVEGPWSSPPRQSQPARGAREXXXXXXXXXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITVASLPASLALLGPTVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLVLRLANPQITLLRLRLATENGPSTVESDPDGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGFVTVRPAGWGEGDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGRDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVPLDKACADRVAAAVKAAAAAAEALPVLDVRFSLVMGEGEGGSGDDISMPIAVRFPLSSCPS 1509
VSDLD+AVARR QVV AASRSVALPRPPAAT AAA AVSPPWALREDT GPDPALW LSSGHET GLAERVEGPWSSPPRQS PARGAR XXXXXXXXXXXXXXXXXXXXX VPRRVRLRAR+GKRCRKDLAAGRTGILIKATFNPLDGDSSTAK EGVKKTWFKKDCSAALSVPRITVASLP+SLALLGPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSLVLRLANPQITLLRLR+ATENGPS+ ESDP GNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX N GFVTVRPAGWGEGDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGG DTGSPPGAERSGRAGATPFLLHQQGDVAWVRVP DKACADRVAAAVKAAAA LPVLDVRFSLVMGEGEGGSGDDISMPIAVRFPLSSCPS
Sbjct: 178 VSDLDEAVARRAQVVVAASRSVALPRPPAATAAAA----AVSPPWALREDTTGPDPALWTLSSGHETAGLAERVEGPWSSPPRQSPPARGARXXXXXXXXXXXXXXXXXXXXXX-----VPRRVRLRARVGKRCRKDLAAGRTGILIKATFNPLDGDSSTAK------------EGVKKTWFKKDCSAALSVPRITVASLPSSLALLGPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----PSLVLRLANPQITLLRLRVATENGPSSAESDPAGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNPGFVTVRPAGWGEGDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGGDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVPFDKACADRVAAAVKAAAA----LPVLDVRFSLVMGEGEGGSGDDISMPIAVRFPLSSCPS 650
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN23_9PHAE) HSP 1 Score: 486 bits (1252), Expect = 2.540e-162 Identity = 387/503 (76.94%), Postives = 399/503 (79.32%), Query Frame = 1
Query: 1 VSDLDDAVARRNQVVAAASRSVALPRPPAATPAAAGTXXAVSPPWALREDTDGPDPALWALSSGHETTGLAERVEGPWSSPPRQSQPARGAREXXXXXXXXXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITVASLPASLALLGPTVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSLVLRLANPQITLLRLRLATENGPSTVESDPDGNTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAGFVTVRPAGWGEGDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGRDTGSPPGAERSGRAGATPFLLHQQGDVAWVRVPLDKACADRVAAAVKAAAAAAEALPVLDVRFSLVMGEGEGGSGDDISMPIAVRFPLSSCPS 1509
VSDL++AVARR QVVAAASRSVALP+PPAA AGT AVSPPWALR DTDGPDPALW LSSGHET GLAERVEG WSSPPRQS PARGAR XXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLA G + + L S+ + R R EG+KKT FKKDCSAALSVPRITVASLP+SLALLGPT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PSLVLRLANPQITLLRLR+ATE+GPST ESD DGN A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NAGFVTVRPAGWGE DWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGG TGS PGAERSGRAGATPFLLHQQGDVAWVRVPLDKACADRVAAA KA ALPVLDVRFSLVMGEG+GG GDDISMPIAVRFPLSSCPS
Sbjct: 254 VSDLNNAVARRTQVVAAASRSVALPQPPAA----AGTPAAVSPPWALRGDTDGPDPALWTLSSGHETAGLAERVEGSWSSPPRQSPPARGAR-----GDGXXXXXXXXXXXXXXXXXXXVPRRVRLRARLGKRCRKDLALG---LCLPPPPPALSSKSALGPIAHKHTRRTNRQEGIKKTRFKKDCSAALSVPRITVASLPSSLALLGPTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------PSLVLRLANPQITLLRLRVATEHGPSTAESDLDGNIAAAAAATVGVDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATGVTAAAAPALGAGGG---NAGFVTVRPAGWGEDDWVHLEGREDEIIRQPGDRYRLPRGLLSRADDGGGGYTGSLPGAERSGRAGATPFLLHQQGDVAWVRVPLDKACADRVAAAAKAXXX--XALPVLDVRFSLVMGEGDGGGGDDISMPIAVRFPLSSCPS 730
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCB8_HETAK) HSP 1 Score: 63.9 bits (154), Expect = 9.060e-9 Identity = 34/82 (41.46%), Postives = 49/82 (59.76%), Query Frame = 1
Query: 361 PRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITVASLPA 606
P R+ L + +RCR+D+ G++GILIK + NP++GDSS RG+ W+KKD SA VP+IT+ SLP+
Sbjct: 13 PHRLPLLGKRARRCRRDVEDGKSGILIKPSVNPMEGDSSQPSNRGK--------------WWKKDASAIHFVPQITIVSLPS 80
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ECG0_TRICV) HSP 1 Score: 65.1 bits (157), Expect = 2.670e-8 Identity = 36/78 (46.15%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 358 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITV 591
+P + LRAR +RCR +LAAGRTGIL+K NPL+GDSS G+ W+KKD SA SVP++ V
Sbjct: 90 LPLPIPLRARKSRRCRAELAAGRTGILVKPKVNPLEGDSSLRSGHGQ--------------WWKKDSSAIHSVPKVQV 153
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MWN0_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 4.280e-8 Identity = 37/78 (47.44%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 358 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITV 591
+P V LRAR +RCR++LA GRTGIL+K NPL+GDSS G+ W+KKD SA SVPR++V
Sbjct: 291 LPLPVPLRARKSRRCRRELAEGRTGILVKPKVNPLEGDSSLRSGHGQ--------------WWKKDSSAVHSVPRVSV 354
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SN59_THAOC) HSP 1 Score: 65.1 bits (157), Expect = 1.590e-7 Identity = 35/74 (47.30%), Postives = 43/74 (58.11%), Query Frame = 1
Query: 370 VRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITV 591
V RAR+ +RCR +LAAGRTGIL+K NPL+GDSS G+ WFKKD SA VPR+ +
Sbjct: 279 VPYRARVSRRCRAELAAGRTGILVKPKLNPLEGDSSLRTGHGQ--------------WFKKDSSATQVVPRVQI 338
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EC45_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 2.640e-7 Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 358 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITV 591
+P ++LR R +RCR +LAAGRTGIL+K NPL+GDSS G+ W+KKD SA VPR+ V
Sbjct: 123 LPVPIQLRPRKSRRCRAELAAGRTGILVKPKLNPLEGDSSLRSGHGQ--------------WYKKDSSAIHVVPRVQV 186
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2CU51_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 3.990e-7 Identity = 35/78 (44.87%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 358 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITV 591
+P ++LR R +RCR +LAAGRTGIL+K NPL+GDSS G+ W+KKD SA VPR+ V
Sbjct: 300 LPVPIQLRPRKSRRCRAELAAGRTGILVKPKLNPLEGDSSLRSGHGQ--------------WYKKDSSAIHVVPRVQV 363
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R1C9_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.860e-5 Identity = 33/78 (42.31%), Postives = 44/78 (56.41%), Query Frame = 1
Query: 358 VPRRVRLRARLGKRCRKDLAAGRTGILIKATFNPLDGDSSTAKARGEEREREQRGEGVKKTWFKKDCSAALSVPRITV 591
+P + L R +RCRK+LAAGRTGIL+K NPL+GDSS + W+KKD SA VP++T+
Sbjct: 19 LPYPIPLHTRKIRRCRKELAAGRTGILMKPKPNPLEGDSSLRSGHDQ--------------WWKKDSSAIHVVPKVTL 82 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1011.148.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1011.148.1 >prot_Ecto-sp9_F_contig1011.148.1 ID=prot_Ecto-sp9_F_contig1011.148.1|Name=mRNA_Ecto-sp9_F_contig1011.148.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=504bp VSDLDDAVARRNQVVAAASRSVALPRPPAATPAAAGTPAAVSPPWALREDback to top mRNA from alignment at Ecto-sp9_F_contig1011:12152..14352- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1011.148.1 ID=mRNA_Ecto-sp9_F_contig1011.148.1|Name=mRNA_Ecto-sp9_F_contig1011.148.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=2201bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:12152..14352- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1011:12152..14352- >mRNA_Ecto-sp9_F_contig1011.148.1 ID=mRNA_Ecto-sp9_F_contig1011.148.1|Name=mRNA_Ecto-sp9_F_contig1011.148.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3024bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:12152..14352- (Ectocarpus species9 EcSCA_722f female)back to top |