mRNA_Ecto-sp9_F_contig1011.145.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1011.145.1
Unique NamemRNA_Ecto-sp9_F_contig1011.145.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1011.145.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1011contigEcto-sp9_F_contig1011:4095..4420 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_002690.1
Exons1
Model size326
Cds size225
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.191555-UTR-Ecto-sp9_F_contig1011:4094..41951622928205.191555-UTR-Ecto-sp9_F_contig1011:4094..4195Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1011 4095..4195 -
1692277794.1923351-UTR-Ecto-sp9_F_contig1011:4094..41951692277794.1923351-UTR-Ecto-sp9_F_contig1011:4094..4195Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1011 4095..4195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928205.2036312-CDS-Ecto-sp9_F_contig1011:4195..44201622928205.2036312-CDS-Ecto-sp9_F_contig1011:4195..4420Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1011 4196..4420 -
1692277794.2042935-CDS-Ecto-sp9_F_contig1011:4195..44201692277794.2042935-CDS-Ecto-sp9_F_contig1011:4195..4420Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1011 4196..4420 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1011.145.1prot_Ecto-sp9_F_contig1011.145.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1011 4196..4420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1011.145.1

>prot_Ecto-sp9_F_contig1011.145.1 ID=prot_Ecto-sp9_F_contig1011.145.1|Name=mRNA_Ecto-sp9_F_contig1011.145.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=75bp
MPVLHILTSKARRAKGVGGMGACFSACAIRGTNWTGRAAPRVPLLEVFAL
LLYGRDGLGCRSLAGSICFLPVPM*
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mRNA from alignment at Ecto-sp9_F_contig1011:4095..4420-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1011.145.1 ID=mRNA_Ecto-sp9_F_contig1011.145.1|Name=mRNA_Ecto-sp9_F_contig1011.145.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=326bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:4095..4420- (Ectocarpus species9 EcSCA_722f female)
ATGCCGGTCCTGCACATTTTAACCTCGAAGGCCCGAAGGGCAAAAGGGGT
GGGGGGAATGGGGGCCTGCTTTTCTGCGTGCGCGATCAGGGGAACAAATT
GGACGGGGCGAGCTGCCCCCCGCGTTCCGCTGCTAGAGGTTTTCGCGCTA
CTGCTGTACGGCCGCGATGGCTTGGGTTGTCGCTCCCTCGCTGGATCCAT
CTGCTTCTTACCGGTTCCTATGTAGTGCGCGTCTGTTTGGCAGAAAGCGT
TGGTTGTGAAGGTGGTTGGCTGCGCAGAGCTAGAATCGCGCCTAGTATTC
CTCCTGCCGGAGCCCCTGCCCGTGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1011:4095..4420-

>mRNA_Ecto-sp9_F_contig1011.145.1 ID=mRNA_Ecto-sp9_F_contig1011.145.1|Name=mRNA_Ecto-sp9_F_contig1011.145.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=450bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1011:4095..4420- (Ectocarpus species9 EcSCA_722f female)
ATGCCGGTCCTGCACATTTTAACCTCGAAGGCCCGAAGGGCAAAAGGGGT
GGGGGGAATGGGGGCCTGCTTTTCTGCGTGCGCGATCAGGGGAACAAATT
GGACGGGGCGAGCTGCCCCCCGCGTTCCGCTGCTAGAGGTTTTCGCGCTA
CTGCTGTACGGCCGCGATGGCTTGGGTTGTCGCTCCCTCGCTGGATCCAT
CTGCTTCTTACCGGTTCCTATGTAGATGCCGGTCCTGCACATTTTAACCT
CGAAGGCCCGAAGGGCAAAAGGGGTGGGGGGAATGGGGGCCTGCTTTTCT
GCGTGCGCGATCAGGGGAACAAATTGGACGGGGCGAGCTGCCCCCCGCGT
TCCGCTGCTAGAGGTTTTCGCGCTACTGCTGTACGGCCGCGATGGCTTGG
GTTGTCGCTCCCTCGCTGGATCCATCTGCTTCTTACCGGTTCCTATGTAG
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