mRNA_Ecto-sp9_F_contig1162.1355.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: Sart3 (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJP0_ECTSI) HSP 1 Score: 1028 bits (2657), Expect = 0.000e+0 Identity = 518/539 (96.10%), Postives = 528/539 (97.96%), Query Frame = 1
Query: 1 MEMDGEVASGGGGAVAPVSKAEQFALLKGAVKDCPGDYTAHLSLVKHLRGERPGSLELLKARQDFSERFPLSPELWQEWIDDRRAAGGEDGAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAGDGEISKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKEVSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAESQARRQWDRVLRHSGKRLVSWEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
ME+DGEVASGGGGAVAP SKAEQFALLKGAVKDCPGDYTAHL LVKHLRGERPGSLELLKARQDFSERFPL PELWQEWIDDRRAAGGEDGAED+LALY RAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMG GDGEI+KARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKEV+QAHAKASKML ARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADG PSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAV+NLPWSAELWCR LRSLERSSEEAG PSGEGTAGAEAAMRRVWKEALGS+LPSPDEYVK+LLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQ LEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRR+QIEDELVED+ADL+LDGVAAESQARRQWDRVLRHSGKRLVSWEEAIKWER STGDLAACRRLYARSLNEVQDYPE
Sbjct: 1 MEVDGEVASGGGGAVAPASKAEQFALLKGAVKDCPGDYTAHLFLVKHLRGERPGSLELLKARQDFSERFPLGPELWQEWIDDRRAAGGEDGAEDILALYRRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGVGDGEIAKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKEVAQAHAKASKMLAARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGHPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVRNLPWSAELWCRRLRSLERSSEEAGGPSGEGTAGAEAAMRRVWKEALGSSLPSPDEYVKILLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQALEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRRIQIEDELVEDIADLDLDGVAAESQARRQWDRVLRHSGKRLVSWEEAIKWERRSTGDLAACRRLYARSLNEVQDYPE 539
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: RRM (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Q0_9STRA) HSP 1 Score: 271 bits (692), Expect = 8.780e-76 Identity = 195/552 (35.33%), Postives = 279/552 (50.54%), Query Frame = 1
Query: 88 AVKDCPGDYTAHLSLVKHLRGERPGSLELLK-ARQDFSERFPLSPELWQEWIDDRRAAGGEDGAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDD-----------EGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAGDGEISKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKEVSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANA----WEAYAAMEAADG-QPSRAALALERAESEG-CCLHERIWVTHSDLLLAQMGAKD-----------------EEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDE-YVKVLLAYCASFRRRLLLAVDAVVKAKPL-PGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAES------QARRQWDRVLRHSGKRLVSWEEAIKWERGSTGDLAACRRLYARSLNEVQDYP 1614
AVK P Y AHL+LV+ LR E L+ AR+ F++ FPLSPELW +WI D +A GG A DV ALY RAF DYQCA LWPGYLE L+ D +D E + +R+A E ALT VGVHP +G VW + FE +EL+D EE GA + E++ R R+ + RQL+VPL GN+ + + A S D A + + A +A ++ EA E G+A+ W Y E A+ QP+RA ERA SEG CCL + W ++DLLL + AK +E ++ RAV+N+PWS+ LWCR LRS ER + P EG A A+ + ++AL S P+P++ ++++L+A C RR + A + +P P + T D A + ++ MR AF EA F++ YP W+EGWL ++ +V+ E +LV+ + +A++ W+ + + +W W R G AACR L R+L + P
Sbjct: 52 AVKANPRSYDAHLTLVQTLRTAGVEHREALRQARETFAKAFPLSPELWADWIADEKAGGGN--AADVKALYERAFKDYQCAALWPGYLELLDEMSDNEDLAAMEQGQAPEELSETELRQAHEAALTAVGVHPTVGPQVWAAYRTFEQDELQDLEETGASEDELAAVRTRIMALLSRQLTVPLPGNE---TVLQLAVALSQDLAA--DAASAEKEAKRLREAHRRTEA-------------GDASLALARWLEYCEFERAEERQPARAQFLYERALSEGGCCLFDTAWERYADLLLCDLKAKTXXXXXXXXXXXXXXXXAQELQVMRRAVRNVPWSSSLWCRLLRSEERCT-----PDAEGRVSAVLAV--LGEQALPSTFPTPEQDHLRLLMAGCDVARRAVAAATASAADVRPQHPSQM---TKDKAATL---VKDAVQRMREAFIEALGFLEHRYPRWEEGWLALLAYKVETEMQLVKPXXXXXXXXXXXXTSSDLRCEAKQDWEVAVNRWRQSAAAWLSYAAWLRTQPGGAAACRALLRRALTALSGEP 570
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: squamous (cell carcinoma antigen recognized by T-cells 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A8923) HSP 1 Score: 165 bits (418), Expect = 6.780e-40 Identity = 134/514 (26.07%), Postives = 241/514 (46.89%), Query Frame = 1
Query: 103 PGDYTAHLSLVKHLRGERPGSLELLKA-RQDFSERFPLSPELWQEWI-DDRRAAGGEDGAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAGDGE------ISKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKEVSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRR-VQIEDELVEDMADLNLDGVAAESQARRQWDRVLRHSGKRLVSWEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
P Y +HL L+K +R G L+ L+ RQ+ S+ FPL+ ELW EWI D+ A + + +L+L+ DYQ KLW Y + + +++ DD G+S +R+ FE+A+ G+H G ++W FEM L+ E+M + + I ++RVK ++RRQ+++PL+G + + D ++ ++ + V QAHAKA LE + +E V + P + + +Y E G P+R ERA E C + + +W+ ++ L ++ + RA++N PW + LW ++++LERS + E M+ +AL + +Y+++ YC+ RR+ ++ + D + ++A+R F A +++ +Y G D ++RR +IE + D+ + A++ W++V+ + L W E R S L+ CR++ R++ D PE
Sbjct: 44 PYKYDSHLQLIKLVRAS--GDLDKLREIRQNMSKIFPLTEELWLEWIKDELPLACLPEHRKMILSLFEHGVKDYQSVKLWIEYCQFIMDNMEGDD--GLSNVRDVFEKAIVAAGLHVTEGSSIWDGYRDFEMAILDSFEQMLTDENKNTMEEKIESQKERVKSLFRRQVAIPLLGMQGT--MRDFEDWVEDEEEIPEAVEQAHAKALAKLEEIIPYEDTVASAE------PPKLTEYRSYLEYEVKKGDPARIQCLYERAIKENCLVGD-LWIEYTGYLDTKLKMSSVVLPVYERALRNCPWVSVLWQNYMKALERSKAK------------ETTMKETLDKALTCGFTNAQDYLQLWHCYCSFLRRQ-----------------IQNWSPDNEQ---------VKALREGFQSAIDYIE-HYFGKDGDSTNLLRRYWARIEAFKMNDIEE-----------AQKLWEKVMTGHARELEYWLEYANLAR-SCRSLSLCRKILQRAVQSASDNPE 493
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: Spliceosome (associated factor 3, U4/U6 recycling protein n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BQR5_9SAUR) HSP 1 Score: 164 bits (414), Expect = 2.490e-39 Identity = 142/520 (27.31%), Postives = 229/520 (44.04%), Query Frame = 1
Query: 109 DYTAHLSLVKHLRGERPGSL-ELLKARQDFSERFPLSPELWQEWIDDR-RAAGGEDGAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAGDGEISKAR---------DRVKRVYRRQLSVPLIGNDESRLLEDMKEAFS-----GDDAGLKEVSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAESQARRQWDRVLRHSGKRLVS-WEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
DY HL L+K L E G L +L +ARQ SE FPL+ E+W +W+ D R A E + L+ RA DY C +LW Y + + + EGG+ +R FE ALT VG+H G A+W + FE LE + G G IS A +++ ++RRQLS+PL+ DM+ ++ ++ +EV + + KAS+ +E +E+A+ + ++AY E G P+R L ERA ++ C + + +W+ ++ L Q+ K+ RAV+N PW+ LW +L +LER E + ++ AL + +YV++ AY RRR+ D+ + + L R+ A +E ++ +E F + P +++ +IE L +M +AR WD ++ + + W E ER GD CR+ R++ DYPE
Sbjct: 66 DYNCHLDLIKLLHQE--GELVKLRRARQKMSELFPLTEEIWLDWLKDEIRMASENSEREKIYELFERAVKDYICPELWLEYAQYSIGGIGQ--EGGIENVRSVFERALTAVGLHVSKGAAIWEAYREFENAILETMQPAG---GSISSAERQQATSAQLEKIXTLFRRQLSIPLL---------DMETTYAEYEEWSEEPVPEEVIKNYKKASQQMEKYKPYEEALLVAETPKLA------EYQAYIDFEMKAGDPARIQLIYERALADNCLVPD-LWLRYTQYLDRQLKVKELVLSAHERAVRNCPWTVRLWNHYLLALERHHVE------------HQLIAETFENALNAGFIQATDYVEIWQAYLDYLRRRVDFTQDSSKELEDL---------------RSAFAHAVEYLKQEVEER--FSESGDPS-----CTIMQTWARIEARLCNNM-----------QKARELWDHIMTKGNAKYANMWLEYYNLERAH-GDTQHCRKALHRAVQCTSDYPE 516
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: Spliceosome (associated factor 3, U4/U6 recycling protein n=3 Tax=Pipistrellus kuhlii TaxID=59472 RepID=A0A7J7UHC5_PIPKU) HSP 1 Score: 162 bits (410), Expect = 8.640e-39 Identity = 145/517 (28.05%), Postives = 231/517 (44.68%), Query Frame = 1
Query: 109 DYTAHLSLVKHLRGERPGSLELLK-ARQDFSERFPLSPELWQEWIDDRRAAGGED-GAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAGDGEISKAR------DRVKRVYRRQLSVPLIGNDESRLLEDMKEAFS-----GDDAGLKEVSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAESQARRQWDRVLRHSGKRLVS-WEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
DY HL L++ LR E G L L+ ARQ SE FPL+ ELW EW+ D + G+ E V L+ RA DY C +W Y + + + +GG+ +R FE AL+ VG+H G A+W + FE +E A M + + ++V ++RRQL++PL DM+ F+ +D + V Q++ KA + LE +E+A+ + P A ++AY E G P+R L ERA E C + + +W+ +S L Q+ KD + +RAV+N PW+ LW R+L +LER + + +++AL + +YV++ AY RRR+ D+ + + L R+ A+ LE ++ +E F + P +++ +IE L +M +AR WD ++ + + W E ER GD CR+ R++ DYPE
Sbjct: 115 DYNCHLDLIRLLRLE--GELTKLRGARQKMSEIFPLTEELWLEWLHDEISMAGDSRDREHVYDLFERAVKDYICPNIWLEYGQYSVGGIGQ--KGGLEKVRSVFERALSSVGLHMTKGLAIWEAYREFENAIVEAARPMAGFLSPFDREQTFDSQLEKVHSLFRRQLAIPLY---------DMEATFAEYEEWSEDPVPESVIQSYHKALQQLEKYKPYEEALLEAET-----PRLAE-YQAYIDFEMKIGDPARIQLIFERALVENCLVPD-LWIRYSQYLDRQLKVKDLVLSVHSRAVRNCPWTVALWSRYLLALERHGVD------------HQVISVTFEKALSAGFIQATDYVEIWQAYLDYLRRRVDFKQDSSKELEEL---------------RSAFARALEYLQQEVEER--FNESGDPS-----CMIMQNWARIEARLCNNM-----------QKARELWDSIMTKGNAKYANMWLEYYSLERAH-GDTQHCRKALHRAVQCTSDYPE 565
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: Spliceosome (associated factor 3, U4/U6 recycling protein n=2 Tax=Pseudonaja textilis TaxID=8673 RepID=A0A670ZRT9_PSETE) HSP 1 Score: 161 bits (408), Expect = 1.230e-38 Identity = 142/515 (27.57%), Postives = 226/515 (43.88%), Query Frame = 1
Query: 109 DYTAHLSLVKHLRGERPGSLELLKARQDFSERFPLSPELWQEWIDDRRAAGGEDGAEDVLALYCRAFADYQCAKLWPGYLETLEASL-DEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAGDG-----EISKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKE-----VSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAESQARRQWDRVL-RHSGKRLVSWEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
DY HL+L+K +R E +L + AR++ SE FPL+ E+W +W+ D G E + L+ RA DY C ++W LE + S+ D EGG++ +R E A+ VG+H G A+W + FE L + + G+ +++ ++ ++ VYRRQL +PLI DM+ F + E V Q++A+A K L+ +E A+ + P A +EAY E G P+R L ERA E C L +W ++ L Q+ + RAV+N PW+ ++WC +L +LER E + ++ +L P +YV++ AY RRR+ D+ + + L T AQ L ++ D E F + P +++ +IE +M +AR WD ++ + + K W E ER GD CR+ R++ DYPE
Sbjct: 15 DYNTHLALIKIMRDESDFALPV--ARRNMSEIFPLTEEMWLDWLKDEIYKPGGSDREKIYELFERAVKDYICPQIW---LEYAQYSMGDIGTEGGIARVRAILERAIIEVGLHVTKGAAIWETYREFENAILATMQ-VSPGNAALELVQVTVSQRKIHSVYRRQLGIPLI---------DMEATFMEYQSWTDEPIPYAVRQSYARALKQLQKYKPYEDALLVAE-----APKLAE-YEAYIDFEMKIGDPARIQLIFERALKENC-LEPDLWTRYTQYLDRQLRVRSLVLPAHERAVRNCPWTVKMWCHYLMALERHRVE------------HQVISETFENSLRPGFPQAADYVEIWQAYLDYHRRRVDFTQDSSKELEELRST---------------FAQALNYLKQ--DVEERFNESGDPS-----CTIMQAWARIEARFCNNM-----------QKARELWDLIMVKGNAKYANMWLEYYNLERAH-GDTLHCRKALYRAVQCTHDYPE 461
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: RRM (domain-containing protein n=6 Tax=Galeoidea TaxID=119195 RepID=A0A401PWS9_SCYTO) HSP 1 Score: 160 bits (406), Expect = 1.530e-38 Identity = 144/520 (27.69%), Postives = 230/520 (44.23%), Query Frame = 1
Query: 109 DYTAHLSLVKHLRGERPGSLELLK-ARQDFSERFPLSPELWQEWIDDR-RAAGGEDGAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAG-----DGEISKAR-DRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKE----VSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAF----DEAEAFVDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAESQARRQWDRVLRHSGKRLVS-WEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
DY H+ L+K LR E G LE L+ ARQ SE FPL+ ELW +W+ D R A E+V L+ +A DY C ++W Y + + + +GG+ R F+ ALT VG+H G A+W + FE L + E+ A+ DR+ ++++RQL VPL+ DM+ ++ + E V+Q + KA + +E R +E+ + DP E ++AY E DG P+R + ERA SE C + + +W + L Q+ KD RAV+N PW LW R+L +LER E + +++AL + +YV++ A+ RRR+ + D+ +Q LE +R AF D + +++ + + +++ +IE L +++ +AR WDR++ + W E ER GD CR+ R++ DYPE
Sbjct: 55 DYNCHVDLIKLLRQE--GELEKLRSARQKMSELFPLTEELWLDWLKDEIRMAEKASDRENVYELFEKAIKDYICPEIWLEYAQYSIGGIGQ--QGGIEKARGIFDRALTAVGLHMTKGVAIWEAFREFENAILGTLQPSAGSILTPEQQEMVNAQLDRIHKLFKRQLGVPLL---------DMETTYAEYEEWADEPDEFVTQVYKKAQQQMEKRKPYEENLLAA---DPPKLAE---YQAYIDFEVKDGDPARIQIIFERALSENCLVPD-LWARLTLYLDRQLKIKDLVVSAHERAVRNCPWIVGLWKRYLLALERHQAE------------HKIIIETFEKALNAGFIQATDYVELWQAFLDYLRRRVNFSQDS--------------------------SQELEELRSAFSRGVDYLKQDIEQRFGESGDPSCTILQNWARIEARLCKNI-----------QKARELWDRIMTKGNATYANMWLEYYNLERAH-GDPQHCRKALHRAVQCTTDYPE 504
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: squamous (cell carcinoma antigen recognized by T-cells 3 isoform X1 n=2 Tax=Stenodermatinae TaxID=40234 RepID=UPI00187A4AE5) HSP 1 Score: 161 bits (408), Expect = 1.550e-38 Identity = 147/517 (28.43%), Postives = 229/517 (44.29%), Query Frame = 1
Query: 109 DYTAHLSLVKHLRGERPGSLELLK-ARQDFSERFPLSPELWQEWIDDRRAAGGED-GAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGA----GDGE--ISKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFS-----GDDAGLKEVSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAESQARRQWDRVL-RHSGKRLVSWEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
DY H+ L++ LR E G L ++ ARQ SE FPL+ ELW EW+ D + + G E V L+ RA DY C +W Y + + + +GG+ +R FE AL+ VG+H G A+W + FE +E M D E ++V ++RRQL+VPL DM+ F+ +D + V Q + KA + LE +E+A+ + P A ++AY E G P+R L ERA E C + + +W+ +S L Q+ KD + RAV+N PW+ LW R+L ++ER + M +++AL + +YV++ AY RRR+ D+ + + L R+ A+ LE ++ +E F + P +++ +IE L +M +AR WD ++ R + K W E ER GD CR+ R++ DYPE
Sbjct: 111 DYNCHVDLIRLLRLE--GELTKVRMARQKMSEIFPLTEELWLEWLRDETSMAPDGLGREHVYDLFERAVTDYLCPNIWLEYGQYSVGGIGQ--KGGLEKVRSVFERALSSVGLHITKGLAIWEAYREFESAIVEATRPMAGFLSPSDWEQTFDSQLEKVHSLFRRQLAVPLY---------DMEATFAEYEEWSEDPIPESVVQNYNKALQQLERYKPYEEALLEAE-----APRLAE-YQAYIDFELKVGDPARVQLIFERALVENCLVPD-LWIRYSQYLDRQLKVKDLVLSVHGRAVRNCPWTVALWSRYLLAMERHGVD------------HPVMAATFEKALSAGFIQATDYVEIWQAYLDYLRRRVDFRQDSSKELEEL---------------RSAFARALEYLKQEVEER--FNESGDPS-----CMIMQNWARIEARLCNNM-----------QKARELWDSIMTRGNAKYANMWLEYYNLERAH-GDTQHCRKALHRAVQCTSDYPE 561
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: squamous (cell carcinoma antigen recognized by T-cells 3 n=1 Tax=Thamnophis elegans TaxID=35005 RepID=UPI001378E1EF) HSP 1 Score: 161 bits (407), Expect = 1.980e-38 Identity = 142/522 (27.20%), Postives = 228/522 (43.68%), Query Frame = 1
Query: 103 PGDYTAHLSLVKHLRGERPGSLELLKARQDFSERFPLSPELWQEWIDDRRAAGGEDG-AEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGAG------DGEISKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFSGDDAGLKE-----VSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAF----VDKNYPGWDEGWLCVVRRRVQIEDELVEDMADLNLDGVAAESQARRQWDRVL-RHSGKRLVSWEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
P DY ++ L+K LR ++ L +ARQ+ S+ FPL+ +LW EW+ D ED E + L+ RA DY C K+W Y + + + EGG++ +R E AL VG+H G A+W + FE L + + +++ +YRRQL VPLI DM+ AF ++ +E Q +AKA K L+ +E+A+ + + + AY E G P+R L ERA +E C L +WV ++ L Q+ K+ RAV+N PW+ +LW ++L ++ER E A+ +++AL + P +YV++ AY RRR+ D+ ++ LE +R AF A + V++ + + +++ +IE L +M +AR WD ++ + + K W E ER GD CR+ R++ QDYPE
Sbjct: 67 PYDYNCNVDLIKLLR-KKEDYYGLHRARQNMSKIFPLTEDLWLEWLKDEIELAREDSDREKIYELFERAVKDYICPKIWMEYAQYSIGGIGQ--EGGIAKVRAILERALIAVGLHVTKGAAIWETYREFENAMLATMQPPPGSVPTPEQQQNVKAQLEKIHSLYRRQLGVPLI---------DMESAFLEYESWSEEPIPQTALQNYAKALKQLQKYKPYEEALLVAEAP------KLYEYAAYIGFEVKLGDPTRIQLMYERALAENC-LVPHLWVHYTQYLDRQLKVKEVVLSAYERAVRNCPWAVKLWSQYLLAMERHRME------------HQAISETFEKALKAGFTQPTDYVEIWQAYLDYLRRRVDFTQDS--------------------------SKELEELRSAFGRAIKYLKQDVEERFNVSGDPSCSLMQAWARIEARLCNNM-----------QKARELWDFIMVKGNAKYANMWLEYYNLERAH-GDTLHCRKALYRAVQCTQDYPE 519
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Match: squamous (cell carcinoma antigen recognized by T-cells 3 isoform X1 n=1 Tax=Perognathus longimembris pacificus TaxID=214514 RepID=UPI002019E74B) HSP 1 Score: 160 bits (406), Expect = 2.780e-38 Identity = 147/518 (28.38%), Postives = 233/518 (44.98%), Query Frame = 1
Query: 109 DYTAHLSLVKHLRGERPGSLELLKA-RQDFSERFPLSPELWQEWIDDRRAAGGED-GAEDVLALYCRAFADYQCAKLWPGYLETLEASLDEDDEGGVSAMREAFEEALTRVGVHPVLGGAVWRSLLRFEMEELEDAEEMGA----GDGE--ISKARDRVKRVYRRQLSVPLIGNDESRLLEDMKEAFS-----GDDAGLKEVSQAHAKASKMLEARMEHEQAVKRCQEKDPGGPGEANAWEAYAAMEAADGQPSRAALALERAESEGCCLHERIWVTHSDLLLAQMGAKDEEEKLTARAVKNLPWSAELWCRHLRSLERSSEEAGAPSGEGTAGAEAAMRRVWKEALGSALPSPDEYVKVLLAYCASFRRRLLLAVDAVVKAKPLPGTVEASTSDGARRSRAGIAQGLEAMRGAFDEAEAFVDKNYPGWDEGWLCVVRRR-VQIEDELVEDMADLNLDGVAAESQARRQWDRVLRHSGKRLVS-WEEAIKWERGSTGDLAACRRLYARSLNEVQDYPE 1617
DY H+ L+K LR E G L+ ++A RQ SE FPL+ ELW EW+ D + +D E V L+ RA DY C +W Y + + + +GG+ +R FE AL+ VG+H G A+W + FE +E A + D E ++V ++RRQL++PL DM+ F+ +D V Q++ KA + LE +E+A+ + + P A +++Y E G P+R L ERA E C + + +W+ +S L Q+ KD + +RAV+N PW+A LW R+L ++ER + + +++AL + +YV++ Y RRR+ D+ + + L RA A+ LE ++ +E F + P CVV + +IE L +M +AR WD ++ + + W E ER GD CR+ R++ DYPE
Sbjct: 104 DYNCHVDLIKVLRLE--GELDKVRAARQKMSEIFPLTEELWLEWLQDEISMAADDQDRERVYQLFERAVQDYICPNIWLEYGQYSVGGIGQ--KGGLDKVRSVFERALSSVGLHMTKGLAIWEAYREFESAIVEAARPIAGFLSPSDWEQTFDSQLEKVHSLFRRQLAIPLY---------DMETTFAEYEEWSEDPIPDSVIQSYHKALQQLEKYKPYEEALLQAE-----APRLAE-YQSYIDFEMKIGDPARIQLIFERALVENCLVPD-LWIRYSQYLDRQLKVKDLVLSVHSRAVRNCPWTAALWARYLLAMERHGAD------------HQDISATFEKALSAGFIQATDYVEMWQTYLDYLRRRVDFKQDSSKELEEL---------------RAMFARALEYLQQEVEER--FNENGDPS------CVVMQNWARIEARLCNNM-----------QKARELWDSIMTKGNAKYANMWLEYYNLERAH-GDTQHCRKALHRAVQCTSDYPE 554 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1162.1355.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1162.1355.1 >prot_Ecto-sp9_F_contig1162.1355.1 ID=prot_Ecto-sp9_F_contig1162.1355.1|Name=mRNA_Ecto-sp9_F_contig1162.1355.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=539bp MEMDGEVASGGGGAVAPVSKAEQFALLKGAVKDCPGDYTAHLSLVKHLRGback to top mRNA from alignment at Ecto-sp9_F_contig1162:50..8226- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1162.1355.1 ID=mRNA_Ecto-sp9_F_contig1162.1355.1|Name=mRNA_Ecto-sp9_F_contig1162.1355.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=8177bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1162:50..8226- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1162:50..8226- >mRNA_Ecto-sp9_F_contig1162.1355.1 ID=mRNA_Ecto-sp9_F_contig1162.1355.1|Name=mRNA_Ecto-sp9_F_contig1162.1355.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=3234bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1162:50..8226- (Ectocarpus species9 EcSCA_722f female)back to top |