mRNA_Ecto-sp9_F_contig1160.1347.1 (mRNA) Ectocarpus species9 EcSCA_722f female
|
Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Thioredoxin (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSH7_9PHAE) HSP 1 Score: 205 bits (522), Expect = 5.850e-67 Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1
Query: 1 MTVTPCDTPEALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
MTVTPCDTPEALSTAL GAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLK VDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK
Sbjct: 1 MTVTPCDTPEALSTALAGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLK-VDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 106
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Thioredoxin-like (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS1_9STRA) HSP 1 Score: 125 bits (315), Expect = 2.090e-35 Identity = 61/99 (61.62%), Postives = 76/99 (76.77%), Query Frame = 1
Query: 7 VTPCDTPEALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEA 303
V C T E L +A+ GAG KLVV+DF ATWCGPC++IAP + + S +TDVV+LK VDVD N DA+E YGIEAMPTFKFIKNGEV+E GA+ + ++A
Sbjct: 2 VKSCGTTEELKSAIDGAGGKLVVIDFFATWCGPCRQIAPLMEQWSNEMTDVVYLK-VDVDINKDAAEDYGIEAMPTFKFIKNGEVIEEFVGANPSGLKA 99
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Thioredoxin (n=3 Tax=Pteromalinae TaxID=272242 RepID=A0A7M7T7S9_NASVI) HSP 1 Score: 112 bits (279), Expect = 6.080e-30 Identity = 57/100 (57.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query: 22 TPEALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
T E L T LT AG KLVV+DF ATWCGPCK IAP L +LS+ LTDVVFLK VDVDE +E+Y + +MPTF FIKNG V++ +GA+ ++ T ++ K
Sbjct: 7 TAEELKTKLTEAGEKLVVIDFFATWCGPCKMIAPKLDELSQELTDVVFLK-VDVDELEGVAEEYDVNSMPTFVFIKNGSVLDKFSGANIEKVKLTVQKHK 105
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Thioredoxin (domain-containing protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7H610_NASVI) HSP 1 Score: 110 bits (276), Expect = 1.420e-29 Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1
Query: 28 EALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
E L T LT AG KLVV+DF ATWCGPCK IAP L +LS+ LTDVVFLK VDVDE +E+Y + +MPTF FIKNG V++ +GA+ ++ T ++ K
Sbjct: 2 EELKTKLTEAGEKLVVIDFFATWCGPCKMIAPKLDELSQELTDVVFLK-VDVDELEGVAEEYDVNSMPTFVFIKNGSVLDKFSGANIEKVKLTVQKHK 98
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Thioredoxin (n=1 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6UAS8_9GOBI) HSP 1 Score: 110 bits (275), Expect = 2.330e-29 Identity = 57/97 (58.76%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 31 ALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
+L L AGSKLVVVDF A+WCGPCK IAP K+++ DVVFLK VDVDE SD SEK GI +MPTF+F KNGE +E +GA E + AT + K
Sbjct: 8 SLQKELKAAGSKLVVVDFTASWCGPCKMIAPVFEKMADENKDVVFLK-VDVDEASDVSEKCGISSMPTFQFYKNGEKLEQFSGASEEKLRATVAKLK 103
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Thioredoxin (n=2 Tax=Neogobius melanostomus TaxID=47308 RepID=A0A8C6WUN3_9GOBI) HSP 1 Score: 109 bits (273), Expect = 4.970e-29 Identity = 56/92 (60.87%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 46 LTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
L AGSKLVVVDF A+WCGPCK IAP K+++ DVVFLK VDVDE SD SEK GI +MPTF+F KNGE +E +GA E + AT + K
Sbjct: 15 LKAAGSKLVVVDFTASWCGPCKMIAPVFEKMADENKDVVFLK-VDVDEASDVSEKCGISSMPTFQFYKNGEKLEQFSGASEEKLRATVAKLK 105
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: thioredoxin-like (n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939D750) HSP 1 Score: 108 bits (270), Expect = 1.460e-28 Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 1
Query: 1 MTVTPCDTPEALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASI 297
M+V C T E L AG KLVVVDF+ATWCGPCK I P +A +S + VFLK VDVDENSD +EK+GI AMPTF F K+G+ V+ + GA EA +
Sbjct: 1 MSVIQCHTKEDFDKQLCDAGQKLVVVDFYATWCGPCKVIGPKVAAMSGEYKNAVFLK-VDVDENSDTTEKHGISAMPTFLFFKDGQKVDELVGASEAKL 98
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: thioredoxin (n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077FC24E) HSP 1 Score: 107 bits (266), Expect = 5.760e-28 Identity = 53/94 (56.38%), Postives = 67/94 (71.28%), Query Frame = 1
Query: 40 TALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
T L+ AG KLVVVDFHATWCGPCK+IAPF A L+E TDVVFLK VDVDE D + Y + ++P F F+KN E V+ + GA++ ++A Q K
Sbjct: 13 TKLSAAGDKLVVVDFHATWCGPCKQIAPFFAGLAEEFTDVVFLK-VDVDEVEDVATLYDVSSIPKFVFLKNKEKVDEMLGANQDKLKALVTQHK 105
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Thioredoxin (n=1 Tax=Penaeus japonicus TaxID=27405 RepID=A0A4D5XL86_PENJP) HSP 1 Score: 105 bits (263), Expect = 1.650e-27 Identity = 53/92 (57.61%), Postives = 70/92 (76.09%), Query Frame = 1
Query: 46 LTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
L+ AGSKLVV+DF+ATWCGPCK IAP L ++S++++DVVFLK VDVDE D + I MPTF F+KNG+ VET+TGA+EA + ++ K
Sbjct: 15 LSEAGSKLVVIDFYATWCGPCKMIAPKLEEMSQSMSDVVFLK-VDVDECEDIAADNQITCMPTFLFMKNGQKVETLTGANEAKLREIIQKNK 105
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Match: Hypothetical (protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4K0Z3_9EUKA) HSP 1 Score: 106 bits (264), Expect = 1.890e-27 Identity = 53/97 (54.64%), Postives = 68/97 (70.10%), Query Frame = 1
Query: 31 ALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLTDVVFLKKVDVDENSDASEKYGIEAMPTFKFIKNGEVVETVTGADEASIEATARQFK 321
A AL AG KLVVVDF ATWCGPCKRIAPF A+L+E + DVVF+K VDVDEN D +E G+ +MPTF+F+ G+ V +GA + +I+ + K
Sbjct: 26 AYDKALADAGDKLVVVDFTATWCGPCKRIAPFFAELAEQMPDVVFVK-VDVDENEDVAEACGVNSMPTFQFMIKGKKVHEFSGASQENIKQAIAKHK 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1160.1347.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig1160.1347.1 >prot_Ecto-sp9_F_contig1160.1347.1 ID=prot_Ecto-sp9_F_contig1160.1347.1|Name=mRNA_Ecto-sp9_F_contig1160.1347.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=108bp MTVTPCDTPEALSTALTGAGSKLVVVDFHATWCGPCKRIAPFLAKLSETLback to top mRNA from alignment at Ecto-sp9_F_contig1160:22870..25883- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig1160.1347.1 ID=mRNA_Ecto-sp9_F_contig1160.1347.1|Name=mRNA_Ecto-sp9_F_contig1160.1347.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3014bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1160:22870..25883- (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1160:22870..25883- >mRNA_Ecto-sp9_F_contig1160.1347.1 ID=mRNA_Ecto-sp9_F_contig1160.1347.1|Name=mRNA_Ecto-sp9_F_contig1160.1347.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=648bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1160:22870..25883- (Ectocarpus species9 EcSCA_722f female)back to top |