mRNA_Ecto-sp9_F_contig115.1272.1 (mRNA) Ectocarpus species9 EcSCA_722f female
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Overview
Homology
BLAST of mRNA_Ecto-sp9_F_contig115.1272.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV6_ECTSI) HSP 1 Score: 2483 bits (6435), Expect = 0.000e+0 Identity = 1388/1561 (88.92%), Postives = 1425/1561 (91.29%), Query Frame = 1
Query: 895 MAGVTRPDSDYARYVREQMMADVAAAQRGNDDARRPGQVVATTPAHRGRTLPHAQPVETEDSTTTVSSTIDRKADYASQLREQMASDEATRKAMETERKSKVSTVSSAAGPAIGGHEEGLKGGENEWVNESVRQAKAEYAQQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGREARRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQSPKDIFEQGGNEKYYQQQHQQLLGGVNSFDYQSGEPERRRSQIDDHRSHGRPRTEEKISLSRGEVNNPLATARQERVNHQREYAEALQRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQNGGDSAPREARHLQPGPRPQAGEHARGWSQQPFEREYLREHSTPYGAWPSSQAQSQGRYEVGEHQHSRPPPVSGTHYDAYGSNPRGYPSRGDYDELEYRTGRRGIAKWVADGISASGLPPPRRDFVDDGDRPGERWGTSGPYPERGGGYPGNRSRLPEFGGNNTRQESWDITNPSVGGGYNRDVHPGPTRDHREQQDRRYFGPRGPPGGAPAVGVGVGVRSTKASKMHNPVDPEELARIQAKKESYRRDLEAQMAEHTNLQDQRMQGVPGSKEAEVFHLQQAMEKRNERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAAMVNRGLAASSAIDLSSTPVGESVPQTNSDLFGSGHDGTSSSLLPPSEGGAGVGDAEGVGAPSRRGSGLRELLGIETNAERDREKSRVQAEALKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQKELERKYARERAAEEPLVQASSNPANLPVSEFPTKKGGGTRSPRPIKSPRDLEVNEKRHEDSVMMPHFPGRERGTPSIEAQSDNGEQMVEPSKIETKGPVRRDDPSPHQPPASSRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGISGGGAEGNELWTVPPPPSTEGAEGEGRTPSPSARRRAESTIAAKTAYVANRKFDMDETAEDRLLLAGLRRLSDGNRAPGGGCDTDRLRKDDLGGDSTFREQVPGARAWSSGAASNSRDGRDSKGRPLDYGAVSPGGIRAESRYVFPDGSVRRRLETPAPEGGVSDGGGGGG-VPMPLVGTSRIASADLSFALGVDSLRGGGNGAAGDDVEKASGRRRGTGRTGSRDNEGGEHRGPGAAPGAEWAPVGRPPRSFVPFLNLPASNGKANGNNSKERRWASRGSDGSDSPSFLPPVYSAAVNGRSKRRGRPWAGIGGVLVSPGRAMLTGPGRPGTEATSPERPAYGETGSWHHRRRQSRQRARREGADRGSTSIGDEEFSDDCDSVVSGSTDVEFLRRRAEAKLKSLDRQEAAEKAKAEEELNLLVASSPARGTTDVTTPEAPAMHSRAVGGVRAAAPTHNTARRTISAASSSSSRSLMYSRREKRPGTNKSESSMLGDSRWAEQLK 5574
MAGV RPDSDYAR+VREQMMA VAAAQRGNDDARRPG V AT PA RGRTLPHAQPVETED TTTVSSTIDRKA+YASQLREQMASDEATRKAME ERK KVSTVSSAAGPAIG HEEGL+GGE+EWVNESVRQAKAEYAQQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGR+ARRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQ PKD+FEQGG EKYYQQ HQ+LLGGV+SFDYQSGEPERRRSQIDDHRS GRPRTEEKISLSRGEV+NPLATARQERVNHQREYAEAL+RDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQN G+SAPREA HLQPGPRPQAGEH R WSQQPFEREYLREH+TPYGAWPSSQAQSQG YEVGEH+HSR PPV GTHY+AYGSNP+GYPSRGDYDELEY TGRRG AKWVADGISASGLPPPRRDFVDDG+R GERWGTSGPYPERGGGYPGNR+RLPEFGG +SWDITNPSVGGG++R+VHPGP RDHREQQDRRYFGPRGPPGGAPA G GVGVRSTKAS MHNPVDPEELARIQAKKESYRRDLEAQMAEHT LQDQR QGVPGSKEAEVFHLQ+AME+R+ERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAA N+GL+ASSAID SS PVGES PQT+S+LFGSGHDGTSSSLL PS GGA V DAEGVGAPSRRGSGLRELLGIETNAERDREKSRVQAEALKKQ XXXXXXXXXXXXXXXXXXXXXXXXXXXX EQKELERKYARERAAEEPLVQASSNPANLPVSEFPTKKGGGTRSPRPIKSPR+LEVNEKRHEDSVMMPH PGRERGTPSIEAQSDNGEQMVEPSKIETKGPV+ D PSPHQPPAS RGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGI+GGGAEGNELW VPPPPSTEGAEGEGRTPSPSARRRAES AAK AYVANRKFD DETAEDRLLLAGLRRLSDGNRAPGGGCDTDRLRKDDLGGDSTFREQVPGARAWSSGA SNSRDGRDSK RPLDYGAVSPGGIRAESRYVFPDGSVRRRLETPA EGGV D VPMPLVGTSRIASADLSFALG+DSLRGGGNGAAGDDVEKAS RRRGTGRTGSRDNEGGEHRGPGAAPGAEWAPVGRPPR+FVPFLNLP SNGKANGNNSKE RWASR SDGSDSP FLPPVYSAAVNGRSKRRGRP AGIGGVLVSPGRAMLTGPGRPGT ATSPERPAYGETGS HHRRRQSRQRARREGAD GSTSIGDEEFSDDC+SV SGSTDVEFLRRRAEAKLKSLDR+EAAEKAK E+ELNLLVASSPARGTTDVTTPEAPAMHSRAVGGVR A PTHNTARRTISAASSSSSRSLMYSRR+KRPGTNKSESSMLGDSRWAEQLK
Sbjct: 1 MAGVARPDSDYARHVREQMMAGVAAAQRGNDDARRPGPVAATIPADRGRTLPHAQPVETEDGTTTVSSTIDRKAEYASQLREQMASDEATRKAMEIERKCKVSTVSSAAGPAIGEHEEGLRGGEDEWVNESVRQAKAEYAQQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGRKARRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQPPKDMFEQGGYEKYYQQLHQRLLGGVSSFDYQSGEPERRRSQIDDHRSQGRPRTEEKISLSRGEVSNPLATARQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQNYGNSAPREAGHLQPGPRPQAGEHVRDWSQQPFEREYLREHATPYGAWPSSQAQSQGPYEVGEHRHSRQPPVPGTHYEAYGSNPKGYPSRGDYDELEYPTGRRGNAKWVADGISASGLPPPRRDFVDDGERRGERWGTSGPYPERGGGYPGNRTRLPEFGG-----KSWDITNPSVGGGHDRNVHPGPIRDHREQQDRRYFGPRGPPGGAPAAGGGVGVRSTKASTMHNPVDPEELARIQAKKESYRRDLEAQMAEHTKLQDQRKQGVPGSKEAEVFHLQKAMEERSERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAATGNQGLSASSAIDPSSGPVGESTPQTSSELFGSGHDGTSSSLLAPSGGGADVSDAEGVGAPSRRGSGLRELLGIETNAERDREKSRVQAEALKKQVEDNKVRRDIQKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDARVER---------------------------------------EQKELERKYARERAAEEPLVQASSNPANLPVSEFPTKKGGGTRSPRPIKSPRELEVNEKRHEDSVMMPHLPGRERGTPSIEAQSDNGEQMVEPSKIETKGPVQSDGPSPHQPPASPRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAGGGAEGNELWRVPPPPSTEGAEGEGRTPSPSARRRAESNFAAKNAYVANRKFDTDETAEDRLLLAGLRRLSDGNRAPGGGCDTDRLRKDDLGGDSTFREQVPGARAWSSGAVSNSRDGRDSKRRPLDYGAVSPGGIRAESRYVFPDGSVRRRLETPAAEGGVGDXXXXXXXVPMPLVGTSRIASADLSFALGIDSLRGGGNGAAGDDVEKASWRRRGTGRTGSRDNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVSNGKANGNNSKEGRWASRDSDGSDSPYFLPPVYSAAVNGRSKRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGATSPERPAYGETGSGHHRRRQSRQRARREGADLGSTSIGDEEFSDDCESVGSGSTDVEFLRRRAEAKLKSLDRREAAEKAK-EKELNLLVASSPARGTTDVTTPEAPAMHSRAVGGVRLALPTHNTARRTISAASSSSSRSLMYSRRKKRPGTNKSESSMLGDSRWAEQLK 1516
BLAST of mRNA_Ecto-sp9_F_contig115.1272.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL2_9PHAE) HSP 1 Score: 2329 bits (6036), Expect = 0.000e+0 Identity = 1342/1595 (84.14%), Postives = 1387/1595 (86.96%), Query Frame = 1
Query: 895 MAGVTRPDSDYARYVREQMMADVAAAQRGNDDARRPGQVVATTPAHRGRTLPHAQPVETEDSTTTVSSTIDRKADYASQLREQMASDEATRKAMETERKSKVSTVSSAAGPAIGGHEEGLKGGENEWVNESVRQAKAEYAQQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGREARRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQSPKDIFEQGGNEKYYQQQHQQLLGGVNSFDYQSGEPERRRSQIDDHRSHGRPRTEEKISLSRGEVNNPLATARQERVNHQREYAEALQRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQNGGDSAPREARHLQPGPRPQAGEHARGWSQQPFEREYLREHSTPYGAWPSSQAQSQGRYEVGEHQHSRPPPVSGTHYDAYGSNPRGYPSRGDYDELEYRTGRRGIAKWVADGISASGLPPPRRDFVDDGDRPGERWGTSGPYPERGGGYPGNRSRLPEFGGNNTRQESWDITNPSVGGGYNRDVHPGPTRDHREQQDRRYFGPRGPPGGAPAVGVGVGVRSTKASKMHNPVDPEELARIQAKKESYRRDLEAQMAEHTNLQDQRMQGVPGSKEAEVFHLQQAMEKRNERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAAMVNRGLAASSAIDLSSTPVGESVPQTNSDLFGSGHDGTSSSLLPPSEGGAGVGDAEGVGAPSRRGSGLRELLGIETNAERDREKSRVQAEALKKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQKELERKYARERAAEEPLVQASSNPANLPVSEFPTKKGGGTRSPRPIKSPRDLEVNEKRHEDSVMMPHF-PGRERGTPSIEAQSDNGEQMVEPSKIETKGPVRRDDPSPHQPPASSRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGISGGGAEGNELWTVPPPPSTEGAEGEGRTPSPSARRRAESTIAAKTAYVANRKFDMDETAEDRLLLAGLRRLSDGNRAPGGGCDTDRLRKDDLGGDSTFREQVPGARAWSSGAASNSRDGRDSKGRPLDYGAVSPGGIRAESRYVFPDGSVRRRLETPAPEGGVSDGGGGGGVPMPLVGTSRIASADLSFALGVDSLRGGGNGAAGDDVEKASGRRRGTGRTGSRDNEGGEHRGPGAAPGAEWAPVGRPPRSFVPFLNLPASNGKANGNNSKERRWASRGSDGSDSPSFLPPVYSAAVNGRSKRRGRPWAGIGGVLVSPGRAMLTGPGRPGTEATSPERPAYGETGSWHHRRRQSRQRARREGADRGSTSIGDEEFSDDCDSVVSGSTDVEFLRRRAEAKLKSLDRQEAAEKAK----------------------------------AEEELNLLVASSPARGTTDVTTPEAPAMHSRAVGGVRAAAPTHNTARRTISAASSSSSRSLMYSRREKRPGTNKSESSMLGDSRWAEQLK 5574
MAGV RPDS++AR+VREQMMADVAAAQRGNDDAR G VVA TPAHRGRTLPHAQPVETEDSTT VSS IDRKA+YASQLREQMASDEAT+KAMETERKS VS VS AAGPAIGGHEEGL+GGENE VNESVRQAKAEYA QLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGREA RRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQ PKDI EQGGNEK+YQQ+HQQLLGGVNSFDYQSGEPER RSQIDD RS GRPRTEEKISLSRGE NNPLATARQERVNHQREYAEAL+RDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQN D APREA HLQ GPRPQAGEHARGWSQQPFERE LREH+TPYGAWPS +AQSQGRYEVGEHQHSR PPV GT+YDAYGSNP+GYPSRG YDELEY TGRRG A WVA+GIS SGLPPPRR+F DDG+R GERWGTS YP G GYP +RS LPEFGG N RQESW+ T+PSV GYNRDVH P RDHREQQD YFGPR PP GAPAVG GVGVRSTKASKMHNPVDP ELA+IQAKKESYRRDLEAQMAE T LQ+QR QG+ SKEAEVF+LQQAME+RNERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAA VNRGLAASSAI LSSTPVGESVPQTNSDLFGSGHDGTSSSLLPPSEGGAGV GAPSRRGSGLRELLGIET AERDREKSRVQAEALKKQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX E +YARERAAEEPLVQASSN A+LPVSEFPTKKGGGTRSPRPI SPR+LEVNEKRHE SVMMPH PGRERGTPSIEAQ+DNGEQM EPSKI+TKGPV+RD PSPHQPPASSRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGI+GG AEGNELW VPPPP+ EG EGEGRTPSPS RRRAEST AAK A VANRK DMDETAEDRLLLAGLRRL DGNRAPGGGCDTDRLR GGDSTFREQVPGA AWSSGAAS+ RDGRDSKGRPLDYGAVSPGGIRAESRYVFPDGSVR+RLETPA EGGV VPMPLVGTSRIASADLSFALG+DSLRGGG+GAAGDDVEKASGRRR TGRTGSR NEGGEHRGPGAAPGAEWAPVGRPPR+FVPFLNLP NGKA+GN SKERRWASRGSDGSDSPSFLPPVYSAAVNGRSKRRGRP AGIGGVLVSPGRAMLTGPGRPGT ATSPERPAYGE GS HHRRRQSR+RARREG DR S SIGDEEFSDDCDSV SGSTDVEFLRRRAEAKL+SLDRQEAA KAK AEEELNLLVASSPARGTTD TTPEAPA+HSRAVGGVRAAAPTHNTARR ISAASSSSSRSLMYSR++KRPGTNKSESSMLG+SRWAEQL+
Sbjct: 1 MAGVARPDSNHARHVREQMMADVAAAQRGNDDARLRGPVVAITPAHRGRTLPHAQPVETEDSTTAVSSAIDRKAEYASQLREQMASDEATKKAMETERKSNVSIVSFAAGPAIGGHEEGLRGGENERVNESVRQAKAEYAHQLREQMAAKENAQRAAKGEMENSRSANAGPSWIEGATEGREACRRRSNTEYAEQLRAQIAAQKSINQAQQSLVAARVQPPKDIIEQGGNEKHYQQEHQQLLGGVNSFDYQSGEPERHRSQIDDRRSQGRPRTEEKISLSRGEFNNPLATARQERVNHQREYAEALRRDMAAPKVDSLGRPIGDITSPSRTRLRNSNSGTRNTNNNPEFFGQN--DGAPREASHLQLGPRPQAGEHARGWSQQPFERECLREHATPYGAWPSFRAQSQGRYEVGEHQHSRQPPVPGTNYDAYGSNPKGYPSRGGYDELEYPTGRRGNATWVAEGISTSGLPPPRREFADDGERRGERWGTSESYPATGSGYPIHRSILPEFGGKNARQESWETTHPSVRHGYNRDVHLVPIRDHREQQDHWYFGPRDPPSGAPAVGGGVGVRSTKASKMHNPVDPVELAKIQAKKESYRRDLEAQMAERTKLQNQRKQGMHRSKEAEVFYLQQAMEERNERNKMAPGYEIGPLGVPVIKDNYSTTGRGQRSPAKMRAVAPAATVNRGLAASSAIGLSSTPVGESVPQTNSDLFGSGHDGTSSSLLPPSEGGAGV------GAPSRRGSGLRELLGIETRAERDREKSRVQAEALKKQVEDNKEGKLAKALEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREQKELERNRINNLASVRDLLVTTLMA--------EMLNYSSRYARERAAEEPLVQASSNLADLPVSEFPTKKGGGTRSPRPINSPRELEVNEKRHEGSVMMPHLLPGRERGTPSIEAQTDNGEQMAEPSKIKTKGPVQRDGPSPHQPPASSRGLATPREGVSIEKLRTELWKQKQLTEVLRHEVGQQEAEKRKLIDIARVAKESEAAALRAAYERRASKHPPAKELGIAGGAAEGNELWRVPPPPAVEGVEGEGRTPSPSDRRRAESTRAAKNACVANRKLDMDETAEDRLLLAGLRRLGDGNRAPGGGCDTDRLRN---GGDSTFREQVPGALAWSSGAASSGRDGRDSKGRPLDYGAVSPGGIRAESRYVFPDGSVRQRLETPAAEGGVGXXXXXXXVPMPLVGTSRIASADLSFALGIDSLRGGGSGAAGDDVEKASGRRRSTGRTGSRGNEGGEHRGPGAAPGAEWAPVGRPPRAFVPFLNLPVLNGKASGNTSKERRWASRGSDGSDSPSFLPPVYSAAVNGRSKRRGRPLAGIGGVLVSPGRAMLTGPGRPGTGATSPERPAYGEAGSVHHRRRQSRRRARREGVDRDSISIGDEEFSDDCDSVGSGSTDVEFLRRRAEAKLQSLDRQEAAVKAKGNTFIMEAQCAFRFLALALLARKTNVSPSAPPVQAEEELNLLVASSPARGTTDATTPEAPALHSRAVGGVRAAAPTHNTARRMISAASSSSSRSLMYSRQKKRPGTNKSESSMLGESRWAEQLQ 1576 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig115.1272.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp9_F_contig115.1272.1 >prot_Ecto-sp9_F_contig115.1272.1 ID=prot_Ecto-sp9_F_contig115.1272.1|Name=mRNA_Ecto-sp9_F_contig115.1272.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=1859bp MSPAAETGSHIFIPLPQAGSGKPPLRYPKWCLCLRIATQPQCAPGHAPAVback to top mRNA from alignment at Ecto-sp9_F_contig115:37703..49201+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp9_F_contig115.1272.1 ID=mRNA_Ecto-sp9_F_contig115.1272.1|Name=mRNA_Ecto-sp9_F_contig115.1272.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=11499bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:37703..49201+ (Ectocarpus species9 EcSCA_722f female)back to top Coding sequence (CDS) from alignment at Ecto-sp9_F_contig115:37703..49201+ >mRNA_Ecto-sp9_F_contig115.1272.1 ID=mRNA_Ecto-sp9_F_contig115.1272.1|Name=mRNA_Ecto-sp9_F_contig115.1272.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=11154bp|location=Sequence derived from alignment at Ecto-sp9_F_contig115:37703..49201+ (Ectocarpus species9 EcSCA_722f female)back to top |