mRNA_Ecto-sp9_F_contig11459.1247.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11459.1247.1
Unique NamemRNA_Ecto-sp9_F_contig11459.1247.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11459.1247.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2J6_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 5.980e-18
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 3 
Query:  111 MSDSNKDKSCRSSSSSGGTS-VLFRWPDSGGASNVCVSGAWCGW 239
            MSD+NKDKSCRSSSSSGGTS VLFRWPDSGGASNVCVSGAWCGW
Sbjct:    1 MSDNNKDKSCRSSSSSGGTSEVLFRWPDSGGASNVCVSGAWCGW 44
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BLAST of mRNA_Ecto-sp9_F_contig11459.1247.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL3_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 4.040e-12
Identity = 36/49 (73.47%), Postives = 38/49 (77.55%), Query Frame = 3 
Query:   96 VQPPDMSDSNKDKSCRSSSSSGGTS-VLFRWPDSGGASNVCVSGAWCGW 239
            +Q PDMSDSNKDK+       GGTS V FRWPDSGGASNV VSGAWCGW
Sbjct:    1 MQLPDMSDSNKDKNSXXXXXXGGTSEVQFRWPDSGGASNVGVSGAWCGW 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11459.1247.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.980e-1895.45protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized4.040e-1273.47protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11459contigEcto-sp9_F_contig11459:1779..2017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue5.1e-15
Seed eggNOG ortholog2880.D7G2J6
EggNOG free text desc.6phosphofructo2kinase
EggNOG OGsCOG0406@1,KOG0234@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size239
Cds size129
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928395.3545668-UTR-Ecto-sp9_F_contig11459:1778..18881622928395.3545668-UTR-Ecto-sp9_F_contig11459:1778..1888Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11459 1779..1888 +
1692277857.9026406-UTR-Ecto-sp9_F_contig11459:1778..18881692277857.9026406-UTR-Ecto-sp9_F_contig11459:1778..1888Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11459 1779..1888 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928395.3655765-CDS-Ecto-sp9_F_contig11459:1888..20171622928395.3655765-CDS-Ecto-sp9_F_contig11459:1888..2017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11459 1889..2017 +
1692277857.9175456-CDS-Ecto-sp9_F_contig11459:1888..20171692277857.9175456-CDS-Ecto-sp9_F_contig11459:1888..2017Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11459 1889..2017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11459.1247.1prot_Ecto-sp9_F_contig11459.1247.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11459 1889..2017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11459.1247.1

>prot_Ecto-sp9_F_contig11459.1247.1 ID=prot_Ecto-sp9_F_contig11459.1247.1|Name=mRNA_Ecto-sp9_F_contig11459.1247.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=43bp
MSDSNKDKSCRSSSSSGGTSVLFRWPDSGGASNVCVSGAWCGW
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mRNA from alignment at Ecto-sp9_F_contig11459:1779..2017+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11459.1247.1 ID=mRNA_Ecto-sp9_F_contig11459.1247.1|Name=mRNA_Ecto-sp9_F_contig11459.1247.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=239bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11459:1779..2017+ (Ectocarpus species9 EcSCA_722f female)
CACAACAAGCCAAACACGATAAGCAGGACGACGACACCAAGGGGGCGTGG
CCGAGTCAATTGCGTCGGCTCTTGTTCAGCCCTTGACGATCTCTCGTGCA
ACCCCCCGACATGAGCGACAGCAACAAGGATAAGAGCTGCCGCAGCAGTA
GCAGCAGCGGCGGCACCTCGGTACTGTTTCGCTGGCCCGACTCTGGAGGA
GCAAGCAACGTTTGCGTTTCCGGGGCTTGGTGCGGATGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11459:1779..2017+

>mRNA_Ecto-sp9_F_contig11459.1247.1 ID=mRNA_Ecto-sp9_F_contig11459.1247.1|Name=mRNA_Ecto-sp9_F_contig11459.1247.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11459:1779..2017+ (Ectocarpus species9 EcSCA_722f female)
ATGAGCGACAGCAACAAGGATAAGAGCTGCCGCAGCAGTAGCAGCAGCGG
CGGCACCTCGGTACTGTTTCGCTGGCCCGACTCTGGAGGAGCAAGCAACG
TTTGCGTTTCCGGGGCTTGGTGCGGATGGATGAGCGACAGCAACAAGGAT
AAGAGCTGCCGCAGCAGTAGCAGCAGCGGCGGCACCTCGGTACTGTTTCG
CTGGCCCGACTCTGGAGGAGCAAGCAACGTTTGCGTTTCCGGGGCTTGGT
GCGGATGG
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