mRNA_Ecto-sp9_F_contig11276.1095.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11276.1095.1
Unique NamemRNA_Ecto-sp9_F_contig11276.1095.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11276.1095.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKK6_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 2.840e-56
Identity = 94/98 (95.92%), Postives = 95/98 (96.94%), Query Frame = 1 
Query:    1 MIDWTDGITFGDLMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAKAGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLCDGVFSRGP 294
            MIDWTDGITFG +MDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAKAGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVL DGVFSR P
Sbjct:    1 MIDWTDGITFGGVMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAKAGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLGDGVFSREP 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11276.1095.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.840e-5695.92protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11276contigEcto-sp9_F_contig11276:2222..3644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002360.1
Exons4
Model size321
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11276.1095.1prot_Ecto-sp9_F_contig11276.1095.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11276 2222..3644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928371.321935-CDS-Ecto-sp9_F_contig11276:2221..22691622928371.321935-CDS-Ecto-sp9_F_contig11276:2221..2269Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 2222..2269 +
1692277849.627176-CDS-Ecto-sp9_F_contig11276:2221..22691692277849.627176-CDS-Ecto-sp9_F_contig11276:2221..2269Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 2222..2269 +
1622928371.3348212-CDS-Ecto-sp9_F_contig11276:2831..29271622928371.3348212-CDS-Ecto-sp9_F_contig11276:2831..2927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 2832..2927 +
1692277849.6368167-CDS-Ecto-sp9_F_contig11276:2831..29271692277849.6368167-CDS-Ecto-sp9_F_contig11276:2831..2927Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 2832..2927 +
1622928371.3479235-CDS-Ecto-sp9_F_contig11276:3325..34311622928371.3479235-CDS-Ecto-sp9_F_contig11276:3325..3431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 3326..3431 +
1692277849.6457913-CDS-Ecto-sp9_F_contig11276:3325..34311692277849.6457913-CDS-Ecto-sp9_F_contig11276:3325..3431Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 3326..3431 +
1622928371.3608668-CDS-Ecto-sp9_F_contig11276:3573..36441622928371.3608668-CDS-Ecto-sp9_F_contig11276:3573..3644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 3574..3644 +
1692277849.6560214-CDS-Ecto-sp9_F_contig11276:3573..36441692277849.6560214-CDS-Ecto-sp9_F_contig11276:3573..3644Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11276 3574..3644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11276.1095.1

>prot_Ecto-sp9_F_contig11276.1095.1 ID=prot_Ecto-sp9_F_contig11276.1095.1|Name=mRNA_Ecto-sp9_F_contig11276.1095.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
MIDWTDGITFGDLMDRVLHQLEMAGVTGSEQLVKRLRGRAARDYSRLRAK
AGIASTVDLTDEDIFSSAVDAAPGAIEEARLVAASFRVLCDGVFSRGPRS
FLFGVV*
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mRNA from alignment at Ecto-sp9_F_contig11276:2222..3644+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11276.1095.1 ID=mRNA_Ecto-sp9_F_contig11276.1095.1|Name=mRNA_Ecto-sp9_F_contig11276.1095.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=1423bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11276:2222..3644+ (Ectocarpus species9 EcSCA_722f female)
ATGATCGACTGGACCGACGGGATAACCTTCGGTGACCTCATGGATCGGGT
GAGCAGCGAGAGGGCCGGGGCACGCGCCCGAATCTAGGACATCATTGTGC
TTGGAAGCTGCTGCTTCTGTGGTATTCGTGTGGGTGCGGGTTTTTGTGCG
TGCTGTGCAGCATGGCCAGGCGCGGAGCTGAAGCTACGGTGGTGCTGTTT
CATCTTTTGCCTGGGAGATGTGCTGTGACTCGAATAGGTTTTGCATGCTA
CAGAACGCCGTAAACAACCTGCTGCTGTAGCAGCGGCAGTGGTACCGTTC
GTGTCAGTGAGGTCGGTTTCACGGAGACTACTGTCCATGTGCTTTGGGGG
TGAAAGGAGGGAGGGGACGGGGGGATGAAAACGCCGAGGCAGCAGAGCTT
GGGGACCGTGCACTGTCGCGTGGGCCTTGAGGCGAATAAACCGCGCGCAC
GTGACATGAAAGTCCTGTGCGAAGAAGCCGCTTCTTCATTATGCTGCGAG
AGCAAGAGCCCCGGCAAATGACAAATGACGTCATGGCGCATCTACATGCA
TTGTAGTTCTTGGCGAACCGAAAATTTTTCTTGCCCCGATTTTTCGACAC
GCCGGAACAGGTGCTGCATCAGCTGGAAATGGCGGGGGTCACCGGGTCGG
AGCAGCTCGTGAAGCGTCTGCGGGGGAGGGCCGCGAGGGATTACAGTCGC
CTGAGGGTGCGTGTTCATGATGAGGGGGGGGGGAGGGTGGTGGTTGTTGT
CAACGTGGGATGTGGGGGGGGTAGTTTGTGGTATGATTTGTGCGTTGCTC
GCCGTGTGCGTTGGTTTGCGTTGGTTGTTTTGCTTGATGCTGTTTCAGCT
GTGTTGGTGTGTGTAGCCTGTATGGTGCACACACGACCATTCCCTGCAAC
TTTCCACGGTGTTCTTCGCGAAGATCGGGTCTCGATGTTGATAGGTGATT
GTTGTCACACAATGCCTAGCGGTTGTGTACATAGCCGTACTTGTCGTACA
CGCCACCCTAGACTTTCACCTTTTCGTCCCTCCTATACCAACCCCACCGA
CCCACACCTGTACCCCTCTCCCCGCCCGACTCCCGCGGCACACTACTTGA
CCAGGCGAAGGCCGGCATAGCTTCCACCGTCGACCTCACGGACGAGGACA
TCTTCAGCAGCGCAGTGGATGCTGCACCGGGAGCTATCGAAGAGGCGAGG
CTTGTGGCAGGTGAGCAAGCAGACAGTGCCTGTGGACACTCGATCGCGTT
GCACGTGCTTTGTGTGTCTGATCATGCCTGTTCTCGTTTTCGCTACAATC
CCTTGATACGGTACGCCCTATTTGTTCACGTCACCGCGTTGTACACGCGC
AGCATCGTTTAGGGTGCTATGTGACGGTGTGTTCAGTCGAGGACCCCGTA
GCTTCCTGTTCGGTGTTGTATAA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11276:2222..3644+

>mRNA_Ecto-sp9_F_contig11276.1095.1 ID=mRNA_Ecto-sp9_F_contig11276.1095.1|Name=mRNA_Ecto-sp9_F_contig11276.1095.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11276:2222..3644+ (Ectocarpus species9 EcSCA_722f female)
ATGATCGACTGGACCGACGGGATAACCTTCGGTGACCTCATGGATCGGAT
GATCGACTGGACCGACGGGATAACCTTCGGTGACCTCATGGATCGGGTGC
TGCATCAGCTGGAAATGGCGGGGGTCACCGGGTCGGAGCAGCTCGTGAAG
CGTCTGCGGGGGAGGGCCGCGAGGGATTACAGTCGCCTGAGGGTGCTGCA
TCAGCTGGAAATGGCGGGGGTCACCGGGTCGGAGCAGCTCGTGAAGCGTC
TGCGGGGGAGGGCCGCGAGGGATTACAGTCGCCTGAGGGCGAAGGCCGGC
ATAGCTTCCACCGTCGACCTCACGGACGAGGACATCTTCAGCAGCGCAGT
GGATGCTGCACCGGGAGCTATCGAAGAGGCGAGGCTTGTGGCAGGCGAAG
GCCGGCATAGCTTCCACCGTCGACCTCACGGACGAGGACATCTTCAGCAG
CGCAGTGGATGCTGCACCGGGAGCTATCGAAGAGGCGAGGCTTGTGGCAG
CATCGTTTAGGGTGCTATGTGACGGTGTGTTCAGTCGAGGACCCCGTAGC
TTCCTGTTCGGTGTTGTATAACATCGTTTAGGGTGCTATGTGACGGTGTG
TTCAGTCGAGGACCCCGTAGCTTCCTGTTCGGTGTTGTATAA
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