mRNA_Ecto-sp9_F_contig11266.1086.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig11266.1086.1
Unique NamemRNA_Ecto-sp9_F_contig11266.1086.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig11266.1086.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A9_ECTSI)

HSP 1 Score: 300 bits (768), Expect = 6.010e-91
Identity = 171/186 (91.94%), Postives = 175/186 (94.09%), Query Frame = 1 
Query:    1 NTAMLEARPTYRLLQTYSLLSTVLRKVPVAGSSRSGEDXXXXXXXXXXGQVLFSTVMPADLNKKELTRGVLSGSPLLQAATMNLMASVLDRASLVVAAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPEGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLP 558
            NTAMLEARPTYRLLQTYSLLSTVLRKVPVAGS      XXXXXXXXX GQ LFSTVMPA+LNKKELTRGVLSGSPLLQAATMNLMA +LDR+SLV AAAAGSSPSPPGVV+MKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAP GQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLP
Sbjct:  545 NTAMLEARPTYRLLQTYSLLSTVLRKVPVAGSXXXXXXXXXXXXXXXAGQALFSTVMPAELNKKELTRGVLSGSPLLQAATMNLMAGILDRSSLVAAAAAGSSPSPPGVVDMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPGGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLP 730
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BLAST of mRNA_Ecto-sp9_F_contig11266.1086.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K182_9PHAE)

HSP 1 Score: 296 bits (759), Expect = 9.910e-90
Identity = 170/186 (91.40%), Postives = 175/186 (94.09%), Query Frame = 1 
Query:    1 NTAMLEARPTYRLLQTYSLLSTVLRKVPVAGSSRSGEDXXXXXXXXXXGQVLFSTVMPADLNKKELTRGVLSGSPLLQAATMNLMASVLDRASLVVAAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPEGQHVDRAVVLRWRVLSLLDRYARVIPSSVAAARFDFLKLLP 558
            NTA+LEARPTYRLLQTYSLLS VLRKVPVAGSS   E+XXXXXXXXX GQ LFSTVMPA+LNKKELTRGVLSGS LLQAATMNLMAS+LDRASLVVAAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGD SK   GQHVDRAVVLRWRVLSLLDRYAR+IPSSVAAARFDFLKLLP
Sbjct:  528 NTAILEARPTYRLLQTYSLLSAVLRKVPVAGSSPLSEEXXXXXXXXXAGQALFSTVMPAELNKKELTRGVLSGSTLLQAATMNLMASILDRASLVVAAAAGSSPSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDGSKVTGGQHVDRAVVLRWRVLSLLDRYARLIPSSVAAARFDFLKLLP 713
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig11266.1086.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.010e-9191.94protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized9.910e-9091.40protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig11266contigEcto-sp9_F_contig11266:1361..1918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score296.2
Seed ortholog evalue1e-77
Seed eggNOG ortholog2880.D7G8A9
Preferred nameURB1
KEGG rclassRC00435
KEGG koko:K01626,ko:K07766,ko:K14861
KEGG ReactionR01826
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,ko02024,map00400,map01100,map01110,map01130,map01230,map02024
KEGG ModuleM00022
GOsGO:0001650,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0070013
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG1791@1,KOG1791@2759
EC2.5.1.54,3.6.1.52
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size549
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.8560963-UTR-Ecto-sp9_F_contig11266:1360..13691622928368.8560963-UTR-Ecto-sp9_F_contig11266:1360..1369Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11266 1361..1369 +
1692277849.1837869-UTR-Ecto-sp9_F_contig11266:1360..13691692277849.1837869-UTR-Ecto-sp9_F_contig11266:1360..1369Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig11266 1361..1369 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928368.8679652-CDS-Ecto-sp9_F_contig11266:1369..19181622928368.8679652-CDS-Ecto-sp9_F_contig11266:1369..1918Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11266 1370..1918 +
1692277849.1959758-CDS-Ecto-sp9_F_contig11266:1369..19181692277849.1959758-CDS-Ecto-sp9_F_contig11266:1369..1918Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig11266 1370..1918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig11266.1086.1prot_Ecto-sp9_F_contig11266.1086.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig11266 1370..1918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig11266.1086.1

>prot_Ecto-sp9_F_contig11266.1086.1 ID=prot_Ecto-sp9_F_contig11266.1086.1|Name=mRNA_Ecto-sp9_F_contig11266.1086.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=183bp
MLEARPTYRLLQTYSLLSTVLRKVPVAGSSRSGEDDGGGGGAAAAGQVLF
STVMPADLNKKELTRGVLSGSPLLQAATMNLMASVLDRASLVVAAAAGSS
PSPPGVVEMKRLLRQRMPDLQTLLGLRDKIGVGAGDASKAPEGQHVDRAV
VLRWRVLSLLDRYARVIPSSVAAARFDFLKLLP
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mRNA from alignment at Ecto-sp9_F_contig11266:1361..1918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig11266.1086.1 ID=mRNA_Ecto-sp9_F_contig11266.1086.1|Name=mRNA_Ecto-sp9_F_contig11266.1086.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=558bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11266:1361..1918+ (Ectocarpus species9 EcSCA_722f female)
AACACGGCCATGCTCGAGGCACGTCCGACGTACCGCCTCCTCCAGACGTA
CTCCCTCCTCTCGACAGTGCTGAGAAAGGTCCCGGTGGCTGGCTCCTCAC
GGTCGGGTGAAGACGACGGCGGCGGCGGCGGCGCAGCCGCCGCGGGGCAA
GTGTTGTTCTCGACCGTAATGCCCGCGGACCTCAACAAGAAGGAGCTGAC
GAGGGGTGTCCTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCATGAACC
TGATGGCTAGCGTCCTCGACCGCGCCAGCCTTGTCGTCGCCGCCGCTGCG
GGTTCCTCCCCCTCGCCTCCTGGGGTGGTCGAGATGAAACGCCTCCTGCG
GCAACGCATGCCCGATTTGCAAACGCTGCTGGGACTCCGGGACAAGATCG
GCGTTGGGGCCGGCGATGCTAGCAAGGCCCCGGAGGGGCAGCACGTCGAT
CGGGCAGTGGTCCTGAGGTGGCGCGTGCTGTCCCTGCTCGACCGTTACGC
CCGGGTGATCCCCTCGTCGGTGGCGGCCGCCCGGTTCGACTTCCTCAAGC
TCTTGCCA
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig11266:1361..1918+

>mRNA_Ecto-sp9_F_contig11266.1086.1 ID=mRNA_Ecto-sp9_F_contig11266.1086.1|Name=mRNA_Ecto-sp9_F_contig11266.1086.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=1098bp|location=Sequence derived from alignment at Ecto-sp9_F_contig11266:1361..1918+ (Ectocarpus species9 EcSCA_722f female)
ATGCTCGAGGCACGTCCGACGTACCGCCTCCTCCAGACGTACTCCCTCCT
CTCGACAGTGCTGAGAAAGGTCCCGGTGGCTGGCTCCTCACGGTCGGGTG
AAGACGACGGCGGCGGCGGCGGCGCAGCCGCCGCGGGGCAAGTGTTGTTC
TCGACCGTAATGCCCGCGGACCTCAACAAGAAGGAGCTGACGAGGGGTGT
CCTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCATGAACCTGATGGCTA
GCGTCCTCGACCGCGCCAGCCTTGTCGTCGCCGCCGCTGCGGGTTCCTCC
CCCTCGCCTCCTGGGGTGGTCGAGATGAAACGCCTCCTGCGGCAACGCAT
GCCCGATTTGCAAACGCTGCTGGGACTCCGGGACAAGATCGGCGTTGGGG
CCGGCGATGCTAGCAAGGCCCCGGAGGGGCAGCACGTCGATCGGGCAGTG
GTCCTGAGGTGGCGCGTGCTGTCCCTGCTCGACCGTTACGCCCGGGTGAT
CCCCTCGTCGGTGGCGGCCGCCCGGTTCGACTTCCTCAAGCTCTTGCCAA
TGCTCGAGGCACGTCCGACGTACCGCCTCCTCCAGACGTACTCCCTCCTC
TCGACAGTGCTGAGAAAGGTCCCGGTGGCTGGCTCCTCACGGTCGGGTGA
AGACGACGGCGGCGGCGGCGGCGCAGCCGCCGCGGGGCAAGTGTTGTTCT
CGACCGTAATGCCCGCGGACCTCAACAAGAAGGAGCTGACGAGGGGTGTC
CTGAGCGGGAGCCCGCTGCTGCAGGCCGCTACCATGAACCTGATGGCTAG
CGTCCTCGACCGCGCCAGCCTTGTCGTCGCCGCCGCTGCGGGTTCCTCCC
CCTCGCCTCCTGGGGTGGTCGAGATGAAACGCCTCCTGCGGCAACGCATG
CCCGATTTGCAAACGCTGCTGGGACTCCGGGACAAGATCGGCGTTGGGGC
CGGCGATGCTAGCAAGGCCCCGGAGGGGCAGCACGTCGATCGGGCAGTGG
TCCTGAGGTGGCGCGTGCTGTCCCTGCTCGACCGTTACGCCCGGGTGATC
CCCTCGTCGGTGGCGGCCGCCCGGTTCGACTTCCTCAAGCTCTTGCCA
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