mRNA_Ecto-sp9_F_contig1125.1077.1 (mRNA) Ectocarpus species9 EcSCA_722f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp9_F_contig1125.1077.1
Unique NamemRNA_Ecto-sp9_F_contig1125.1077.1
TypemRNA
OrganismEctocarpus species9 EcSCA_722f female (Ectocarpus species9 EcSCA_722f female)
Homology
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BLAST of mRNA_Ecto-sp9_F_contig1125.1077.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY0_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 3.310e-71
Identity = 126/127 (99.21%), Postives = 126/127 (99.21%), Query Frame = 1 
Query:    1 TKKEAKEREGEARKEEVVAGHMVRERYHAVVIKLVARSKWASEPAGRAHKDVITRAREVIMTIFIDSFHRRLLSLHRLVTSLDQLDRMIAWADDVEEGVNAKEAGVLGPGMPMSEIGLTNIALTVPE 381
            TKKEAKEREGEARKEEVVAG MVRERYHAVVIKLVARSKWASEPAGRAHKDVITRAREVIMTIFIDSFHRRLLSLHRLVTSLDQLDRMIAWADDVEEGVNAKEAGVLGPGMPMSEIGLTNIALTVPE
Sbjct:  222 TKKEAKEREGEARKEEVVAGLMVRERYHAVVIKLVARSKWASEPAGRAHKDVITRAREVIMTIFIDSFHRRLLSLHRLVTSLDQLDRMIAWADDVEEGVNAKEAGVLGPGMPMSEIGLTNIALTVPE 348
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BLAST of mRNA_Ecto-sp9_F_contig1125.1077.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN9_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.510e-24
Identity = 58/60 (96.67%), Postives = 58/60 (96.67%), Query Frame = 1 
Query:   31 EARKEEVVAGHMVRERYHAVVIKLVARSKWASEPAGRAHKDVITRAREVIMTIFIDSFHR 210
            EARKEEVVAGHMVRERY AVVIKLVARSKWASEP GRAHKDVITRAREVIMTIFIDSFHR
Sbjct:  260 EARKEEVVAGHMVRERYRAVVIKLVARSKWASEPVGRAHKDVITRAREVIMTIFIDSFHR 319
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BLAST of mRNA_Ecto-sp9_F_contig1125.1077.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL73_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.970e-18
Identity = 59/117 (50.43%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:   31 EARKEEVVAGHMVRERYHAVVIKLVARSKWASEPAGRAHKDVITRAREVIMTIFIDSFHRRLLSLHRLVTSLDQLDRMIAWADDVEEGVNAKEAGVLGPGMPMSEIGLTNIALTVPE 381
            EARKEEVVAGHMVRE                                            RRLLSLHRLV SLDQLDRMIAW DDVEE VNAK+AGVLGPGMPMS IG     +  P+
Sbjct:  128 EARKEEVVAGHMVRE--------------------------------------------RRLLSLHRLVASLDQLDRMIAWVDDVEEDVNAKQAGVLGPGMPMSVIGFETTKMFEPD 200
[Close]
BLAST of mRNA_Ecto-sp9_F_contig1125.1077.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY9_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.630e-9
Identity = 29/35 (82.86%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:  262 MIAWADDVEEGVNAKEAGVLGPGMPMSEIGLTNIA 366
            MIAWADDVEEGVNA++AGVLGPG+PMSEIGL+  A
Sbjct:    1 MIAWADDVEEGVNAQQAGVLGPGLPMSEIGLSESA 35
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp9_F_contig1125.1077.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Uncharacterized3.310e-7199.21protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.510e-2496.67protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.970e-1850.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized4.630e-982.86protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp9_F_contig1125contigEcto-sp9_F_contig1125:3053..6442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus species9 EcSCA_722f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus species9 EcSCA_722f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_001710.1
Hectar predicted targeting categoryother localisation
Exons4
Model size1532
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp9_F_contig1125.1077.1prot_Ecto-sp9_F_contig1125.1077.1Ectocarpus species9 EcSCA_722f femalepolypeptideEcto-sp9_F_contig1125 3116..5294 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928367.817233-UTR-Ecto-sp9_F_contig1125:3052..31151622928367.817233-UTR-Ecto-sp9_F_contig1125:3052..3115Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1125 3053..3115 +
1692277848.7475927-UTR-Ecto-sp9_F_contig1125:3052..31151692277848.7475927-UTR-Ecto-sp9_F_contig1125:3052..3115Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1125 3053..3115 +
1622928368.0535326-UTR-Ecto-sp9_F_contig1125:5294..64421622928368.0535326-UTR-Ecto-sp9_F_contig1125:5294..6442Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1125 5295..6442 +
1692277848.795353-UTR-Ecto-sp9_F_contig1125:5294..64421692277848.795353-UTR-Ecto-sp9_F_contig1125:5294..6442Ectocarpus species9 EcSCA_722f femaleUTREcto-sp9_F_contig1125 5295..6442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928367.8336458-CDS-Ecto-sp9_F_contig1125:3115..31291622928367.8336458-CDS-Ecto-sp9_F_contig1125:3115..3129Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 3116..3129 +
1692277848.7573283-CDS-Ecto-sp9_F_contig1125:3115..31291692277848.7573283-CDS-Ecto-sp9_F_contig1125:3115..3129Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 3116..3129 +
1622928367.845637-CDS-Ecto-sp9_F_contig1125:3417..35491622928367.845637-CDS-Ecto-sp9_F_contig1125:3417..3549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 3418..3549 +
1692277848.7658265-CDS-Ecto-sp9_F_contig1125:3417..35491692277848.7658265-CDS-Ecto-sp9_F_contig1125:3417..3549Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 3418..3549 +
1622928367.8630838-CDS-Ecto-sp9_F_contig1125:4243..43891622928367.8630838-CDS-Ecto-sp9_F_contig1125:4243..4389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 4244..4389 +
1692277848.7746816-CDS-Ecto-sp9_F_contig1125:4243..43891692277848.7746816-CDS-Ecto-sp9_F_contig1125:4243..4389Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 4244..4389 +
1622928367.8751013-CDS-Ecto-sp9_F_contig1125:5265..52941622928367.8751013-CDS-Ecto-sp9_F_contig1125:5265..5294Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 5266..5294 +
1692277848.783595-CDS-Ecto-sp9_F_contig1125:5265..52941692277848.783595-CDS-Ecto-sp9_F_contig1125:5265..5294Ectocarpus species9 EcSCA_722f femaleCDSEcto-sp9_F_contig1125 5266..5294 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp9_F_contig1125.1077.1

>prot_Ecto-sp9_F_contig1125.1077.1 ID=prot_Ecto-sp9_F_contig1125.1077.1|Name=mRNA_Ecto-sp9_F_contig1125.1077.1|organism=Ectocarpus species9 EcSCA_722f female|type=polypeptide|length=107bp
MVRERYHAVVIKLVARSKWASEPAGRAHKDVITRAREVIMTIFIDSFHRR
LLSLHRLVTSLDQLDRMIAWADDVEEGVNAKEAGVLGPGMPMSEIGLTNI
ALTVPE*
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mRNA from alignment at Ecto-sp9_F_contig1125:3053..6442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp9_F_contig1125.1077.1 ID=mRNA_Ecto-sp9_F_contig1125.1077.1|Name=mRNA_Ecto-sp9_F_contig1125.1077.1|organism=Ectocarpus species9 EcSCA_722f female|type=mRNA|length=3390bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1125:3053..6442+ (Ectocarpus species9 EcSCA_722f female)
ACGAAGAAGGAGGCCAAGGAGCGGGAGGGGGAGGCCCGAAAGGAGGAAGT
AGTGGCGGGGCACATGGTGCGAGAGAGGTATGTGGACGCGCTGCGCGTGA
CGCAGTGTAGGCGCAGCAGTATCGTCTGGTTGTCATTTTTTGAGAGGATA
AAAGGGGGTCGGGGTTGAGGCAGTTCTTGCCATTCGAGGGGACCCCTAGC
GGGCGCATGAAGGTGCTCTTCGAGACACACACACGCCTCCTCGCCCATTT
TAGTGTGTTATTTTTCTTGTTCTGCACTCCGAATCACGCCGAAAGGAATT
GCCAATATTGACGGCTTTTAACCACCACAGACACATGAACGCATCTGCAT
TCCCAACGAATCTAGGTACCATGCGGTGGTGATTAAGCTGGTGGCCAGGT
CGAAGTGGGCATCGGAACCCGCGGGGCGTGCCCACAAGGACGTCATTACG
AGAGCAAGAGAGGTCATCATGACCATCTTCATCGACTCCTTCCACCGGTA
GGAAAACTGGAGGCGATTTCGCTTGGGATAGGGGGGGTTTCCAGGCGTGT
TTAGCGATGAGAGAGTAGGGGTGGGGGGATGTGCGATGCCGCCGCCGGAG
TGGAGAAAAATGGGCGTGGTCACTGCCGTTCTCGTCGTTTCCTCTAGGCA
AAGAGGGTTCGTTCTCTCTCGCTTGTGTGATGAGTGATGAGTGCTGATGC
AGGACCATGCGCTCACGTCTGCGGGGGGATACGCAGTTAGGATGTTGAGG
GGGTCCTTTGGAAGGCGGCGAGAAATGCCGAAATGCCGTTGGTATAGGTC
GGGCACACACGCAGGAGGAGACAGACGGGTCCTCCTGGGTTAAGCACTGA
AACCGCCGTCTTTTCTCATTGGTCAGCTACCTGGCGAGGTCGATGCAAGA
AAGACAGACACAACACATGGGTTCCCAGATCATCGCTGCAGAAGCGTTTC
CCGTTTCTTGCCCGCATTGCGGCTGACTGACGCGTTTTCATTGGTCAGCT
GGCTGGCGCGGTCGATGCTACGGGACTCTCCCACATAAAGTCATTTACAC
AGATCAGAAGTGTTTCTGTTTTCAGTTCACACTGACACTGACGCCTATTC
ATTGGTCAGCCGGTTTTTTTGCTGTCGATGCTACAGTGTTAATGATCACA
TACGCACACTTTTATTCGTGTGCGGCCGCGCACGTGCGCAGGCGGCTGCT
GTCCCTGCACAGGTTGGTGACGTCCCTGGACCAGTTGGACCGGATGATCG
CTTGGGCGGACGACGTGGAGGAAGGTGTCAACGCAAAGGAAGCGGGAGTG
CTCGGTCCGGGGATGCCGATGAGCGAGATAGGCCTTAGTGAGTCAGCCAA
ATCGTGTATGCTACTGGCGCGAGCTGCAGTGAAACGATTTGTTTCTTGTT
GCGCCTGTTTGACCCGTGTTCGAGCTGCTTTGAAGTTGTTGCTGAAAAAC
GTTACAATGCGTAAATGCGTCTTTCACAGCTGTTTCGGGGGCTGGGCACA
GTTCACACCTATTACCAGGGTCGTGGAGGAAGCAGGAATACATACCTTTG
CTGATGAGTATGCGATGTGTTTGAGTGATATTTGAAAGTGCGGTCAGGCC
AAATTTGTTTGGCCTTTGGTGTTTAGGGCTGCCTTTTGGTGTTGATTCGA
TCCAACTCTGTCTTAACCTCCGCCCCTTGGCTGTAACTTCCAATGACACA
AGTGCTTCAGGCCAAGGTTCTTCGGTTTCTTGCTTGGAAAGGGGGTCGTC
TACCATTTTCCAAAGTGACCCACGGTGAATGGGAACCATGAGCGACGGAA
ATCGACAATTTTTCCTGCGTGCAGAAACAACGGAAATGTTCGAGCCGGAC
TGGACTGGACCTTTGTGGTGGCTCACTCATCGACTTTGAGACGGACTGCT
TTCGCTTGAACCTGCCGAGTGTAGGTGGCGGCGCGGACACTCACCCCACA
ACTTGATTCTCACGCGATCTTGTTTTCCTTTGGCCGCTTCCATCGCTTCC
CTCCCTACCCGCTGCTGCCTTTTCCGCCCGCCTCGTTGTTTTCTCCCCGT
GTCTTTTCGGACGCCGTTCTTCTGCTGTGGATTCTGGGGGTCGACCCGGG
ATGCTTCGTGTTTTTTTCCCGGAACGCTTCCGTAACGTGTCTACTGCTTC
TGCTTCGATTGTTCGCGGGATGTCCCATGTTGACTTGACGGAATACCTGT
ACGTGACCCGCAGCCAACATCGCGCTCACCGTCCCGGAATAACTGCGGGT
GTGTCTTCGGCATACCGTGGTTTCGTATTTTAAGGTGCCCCCTGTCCCTG
TTTCTCCGGCGGTTCTTTCCACGGTTTGTTGGAGTGCGAATACCGTCTTC
TGTTCCTTTTTTTTCGGGTTTTCGTCGTGTGTCATGGAAGCGTGAGCGAG
CGATGTGTGCGATCGCGTAGAGCGCCCGGAGGATGATGATGGCTGTTTGA
ATGCCAACCCGGAGGAACCAGTGCCTAGCAAAAGAGCGCAAGCAACACCA
ACCGGTTGGGGGGGGCGTGTATCGCGGTGGACCAGTATTCTGATAGAGTG
GATTGAACGTGCTTACATGGCAGTATGACCAAGTAGGTGAGGAGCACCTC
GATGGGCTTGGCGTACTCGTGTCCAAGGAGCGTGTGCAACGGTAGGGCTC
CTTATGTCACGCCCCCCCCCTACTTCGGAGGAGAACGTTTTCGACTCATT
GTTTCGCCCTTCCACACCGAGGGACGTAGTTTGTTCGACTCGCAAGGGAC
AGCGGTGTCCGAAACGCGCAGGTGAAGCACTTGGTTTGGTCCCAAACCTG
TGCTTTGGAAAAGCTCGTGACAACGTCGTTCCATCGCGACAATGACGGTC
ACTTCATTCCCGCCGTAGAATAAACCTCCTAGAAGAGGGTCGCTAGAGGA
GAATGGAACACAGGGATATCGGTGGGGGTGATGCTTGTAGCCATCTGCGA
TACGTCAGGCCAAGCGTTGTGTGGCGTCGTCTTAGATGAAGGCAGCGAAG
TGAATTGTGGCAATGTGTTCGTGCGGGGTCTCGTCAGCGTAGTCGAACTT
AGGGCGTGTTGAGGAAGCAAGTAGTCAAACGTTGCTGTAAAGATAGGCCC
TGTGTTTTGTATGCAAAGGCTGCGGTTGACCGGAGAAGCCGGCATGAGCG
TTCTTTCTCAGGCGATCATTTTTTTTTTTAGGTATTTACCTTACCAACAA
GCAATATGTACCATTGCTTTGGAGTCAAGGGGGCTTGCTTGAGCTGCAAG
TTTGGAACTTGCTTCTGTGTAGCATATAATGGGGCCCCGTGTCGTGGTCG
GGGTAGGAGATCGGATATTTGAATGTAATGAACGCGCTTATTGGCTATCG
ACTTGCCGATACGTGTAGCGGTACAAAGAATACAATTGGG
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Coding sequence (CDS) from alignment at Ecto-sp9_F_contig1125:3053..6442+

>mRNA_Ecto-sp9_F_contig1125.1077.1 ID=mRNA_Ecto-sp9_F_contig1125.1077.1|Name=mRNA_Ecto-sp9_F_contig1125.1077.1|organism=Ectocarpus species9 EcSCA_722f female|type=CDS|length=642bp|location=Sequence derived from alignment at Ecto-sp9_F_contig1125:3053..6442+ (Ectocarpus species9 EcSCA_722f female)
ATGGTGCGAGAGAGATGGTGCGAGAGAGGTACCATGCGGTGGTGATTAAG
CTGGTGGCCAGGTCGAAGTGGGCATCGGAACCCGCGGGGCGTGCCCACAA
GGACGTCATTACGAGAGCAAGAGAGGTCATCATGACCATCTTCATCGACT
CCTTCCACCGGTACCATGCGGTGGTGATTAAGCTGGTGGCCAGGTCGAAG
TGGGCATCGGAACCCGCGGGGCGTGCCCACAAGGACGTCATTACGAGAGC
AAGAGAGGTCATCATGACCATCTTCATCGACTCCTTCCACCGGCGGCTGC
TGTCCCTGCACAGGTTGGTGACGTCCCTGGACCAGTTGGACCGGATGATC
GCTTGGGCGGACGACGTGGAGGAAGGTGTCAACGCAAAGGAAGCGGGAGT
GCTCGGTCCGGGGATGCCGATGAGCGAGATAGGCCTTAGCGGCTGCTGTC
CCTGCACAGGTTGGTGACGTCCCTGGACCAGTTGGACCGGATGATCGCTT
GGGCGGACGACGTGGAGGAAGGTGTCAACGCAAAGGAAGCGGGAGTGCTC
GGTCCGGGGATGCCGATGAGCGAGATAGGCCTTACCAACATCGCGCTCAC
CGTCCCGGAATAACCAACATCGCGCTCACCGTCCCGGAATAA
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